Wall clock time and date at job start Tue Mar 31 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38160 * 120.02685 * 2 1 4 4 C 1.38245 * 120.05505 * 179.97438 * 3 2 1 5 5 C 1.38287 * 120.11362 * 0.02562 * 4 3 2 6 6 C 1.38124 * 120.05266 * 359.67940 * 5 4 3 7 7 C 1.38717 * 120.02840 * 179.97438 * 2 1 3 8 8 O 1.35901 * 120.05611 * 0.02562 * 7 2 1 9 9 C 1.42895 * 117.00296 * 180.02562 * 8 7 2 10 10 C 1.52992 * 109.47606 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47482 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.47477 * 111.00047 * 265.97286 * 12 11 10 14 14 C 1.53513 * 87.92932 * 221.29743 * 13 12 11 15 15 O 1.42902 * 114.16794 * 272.37323 * 14 13 12 16 16 C 1.50700 * 114.34648 * 139.68711 * 14 13 12 17 17 H 1.08005 * 119.99583 * 266.07840 * 16 14 13 18 18 C 1.37877 * 120.00435 * 86.06645 * 16 14 13 19 19 N 1.31512 * 120.00079 * 180.02562 * 18 16 14 20 20 Si 1.86799 * 119.99673 * 0.02562 * 18 16 14 21 21 H 1.48506 * 109.47230 * 89.99718 * 20 18 16 22 22 H 1.48498 * 109.47149 * 209.99489 * 20 18 16 23 23 H 1.48497 * 109.47291 * 329.99574 * 20 18 16 24 24 C 1.47481 * 111.00017 * 169.99694 * 12 11 10 25 25 H 1.08996 * 109.47619 * 270.01947 * 1 2 3 26 26 H 1.08999 * 109.46880 * 30.03230 * 1 2 3 27 27 H 1.09011 * 109.46748 * 150.01933 * 1 2 3 28 28 H 1.07995 * 119.97649 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.94729 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.97257 * 179.97438 * 5 4 3 31 31 H 1.08006 * 120.02973 * 180.32004 * 6 5 4 32 32 H 1.09002 * 109.47063 * 60.00108 * 9 8 7 33 33 H 1.09001 * 109.46798 * 300.00375 * 9 8 7 34 34 H 1.09002 * 109.47103 * 59.99788 * 10 9 8 35 35 H 1.08998 * 109.46862 * 300.00600 * 10 9 8 36 36 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 37 37 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 38 38 H 1.09000 * 113.47846 * 336.05901 * 13 12 11 39 39 H 1.08998 * 113.47506 * 106.53321 * 13 12 11 40 40 H 0.96702 * 114.00480 * 273.83796 * 15 14 13 41 41 H 0.96998 * 119.99706 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.47744 * 253.47034 * 24 12 11 43 43 H 1.08996 * 113.47276 * 23.88258 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 0.0005 6 6 3.5887 -1.1975 0.0067 7 6 2.2012 -1.2010 0.0005 8 8 1.5234 -2.3789 0.0005 9 6 2.3034 -3.5762 0.0017 10 6 1.3733 -4.7909 0.0009 11 6 2.2084 -6.0729 0.0027 12 7 1.3152 -7.2392 0.0025 13 6 1.0691 -7.7166 1.3760 14 6 1.2035 -9.1497 0.8424 15 8 -0.0164 -9.7072 0.3494 16 6 1.9592 -10.0832 1.7526 17 1 3.0197 -10.2326 1.6129 18 6 1.2969 -10.7464 2.7638 19 7 1.9565 -11.5607 3.5585 20 14 -0.5373 -10.4883 3.0051 21 1 -1.2878 -11.4838 2.1981 22 1 -0.8765 -10.6581 4.4409 23 1 -0.9061 -9.1177 2.5682 24 6 2.0707 -8.4834 -0.2349 25 1 -0.3634 0.0003 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8903 -0.5136 28 1 1.6584 2.1315 -0.0004 29 1 4.1195 2.1330 0.0001 30 1 5.3552 0.0042 0.0005 31 1 4.1314 -2.1313 0.0119 32 1 2.9315 -3.5998 0.8922 33 1 2.9330 -3.6005 -0.8878 34 1 0.7454 -4.7672 -0.8899 35 1 0.7433 -4.7667 0.8900 36 1 2.8359 -6.0964 0.8936 37 1 2.8386 -6.0972 -0.8863 38 1 1.8545 -7.4397 2.0793 39 1 0.0705 -7.4824 1.7447 40 1 -0.5607 -10.1264 1.0299 41 1 1.4905 -12.0275 4.2696 42 1 1.9208 -8.8989 -1.2313 43 1 3.1235 -8.4107 0.0376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307710045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:15 Heat of formation + Delta-G solvation = -39.765965 kcal Electronic energy + Delta-G solvation = -22534.209860 eV Core-core repulsion = 19159.329518 eV Total energy + Delta-G solvation = -3374.880342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.33907 -41.09143 -38.55303 -37.00500 -34.56650 -34.37246 -33.55517 -30.97614 -29.83316 -27.78454 -27.34283 -26.90691 -24.80982 -22.84842 -22.63099 -21.75927 -20.91921 -19.40759 -18.92578 -18.19483 -17.35093 -17.21413 -16.72445 -16.50662 -16.20157 -15.57194 -15.32644 -15.20699 -15.08646 -14.65827 -14.42144 -14.34056 -14.02066 -13.86826 -13.73223 -13.16778 -13.15229 -12.90733 -12.71484 -12.53212 -12.46648 -12.35515 -12.17725 -11.95492 -11.89843 -11.67574 -11.50476 -11.12568 -10.94799 -10.42908 -9.79306 -9.77448 -9.07610 -8.46372 -6.55923 0.37173 0.49132 1.20481 1.27320 1.35853 2.12811 2.14429 2.76538 2.81119 3.06693 3.51819 3.77304 3.83452 3.88754 3.95982 4.00240 4.09295 4.18609 4.21438 4.28820 4.37550 4.41585 4.48016 4.53153 4.61835 4.69599 4.78132 4.79818 4.80507 4.89330 4.94158 4.97761 5.09417 5.16324 5.31045 5.31165 5.38781 5.42541 5.52842 5.60238 5.89975 6.00189 6.18710 6.45728 6.48962 6.74519 7.11780 8.69409 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029528 B = 0.002666 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.030180 B =10499.789838 C =10731.483726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.139 4.139 3 C -0.089 4.089 4 C -0.160 4.160 5 C -0.094 4.094 6 C -0.218 4.218 7 C 0.104 3.896 8 O -0.328 6.328 9 C 0.067 3.933 10 C -0.098 4.098 11 C 0.021 3.979 12 N -0.472 5.472 13 C -0.025 4.025 14 C 0.181 3.819 15 O -0.555 6.555 16 C -0.543 4.543 17 H 0.053 0.947 18 C 0.023 3.977 19 N -0.927 5.927 20 Si 0.921 3.079 21 H -0.253 1.253 22 H -0.282 1.282 23 H -0.240 1.240 24 C 0.025 3.975 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.350 0.650 41 H 0.273 0.727 42 H 0.082 0.918 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 25.198 -6.634 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.140 4.140 3 C -0.107 4.107 4 C -0.178 4.178 5 C -0.111 4.111 6 C -0.237 4.237 7 C 0.059 3.941 8 O -0.242 6.242 9 C -0.009 4.009 10 C -0.136 4.136 11 C -0.107 4.107 12 N -0.194 5.194 13 C -0.154 4.154 14 C 0.141 3.859 15 O -0.367 6.367 16 C -0.581 4.581 17 H 0.071 0.929 18 C -0.177 4.177 19 N -0.565 5.565 20 Si 0.746 3.254 21 H -0.179 1.179 22 H -0.209 1.209 23 H -0.164 1.164 24 C -0.103 4.103 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.168 0.832 29 H 0.166 0.834 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.202 0.798 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.725 25.482 -7.492 26.570 hybrid contribution 0.215 -1.023 1.528 1.852 sum 0.940 24.459 -5.963 25.193 Atomic orbital electron populations 1.20610 0.89990 1.02980 1.02447 1.19637 0.97385 0.90788 1.06201 1.21219 0.94666 0.97045 0.97731 1.21414 0.94303 0.98995 1.03046 1.21282 1.01034 0.91630 0.97202 1.21508 0.92761 1.00681 1.08764 1.19191 0.91242 0.85824 0.97846 1.86014 1.36750 1.12795 1.88676 1.22767 0.94002 0.81818 1.02283 1.21216 0.98130 0.90869 1.03352 1.22593 0.94883 0.90922 1.02332 1.68780 1.32279 1.01467 1.16907 1.24833 1.01324 0.97611 0.91642 1.20245 0.83049 0.89669 0.92956 1.86456 1.34285 1.77051 1.38861 1.21490 0.96440 1.26401 1.13731 0.92875 1.25834 1.03226 0.93785 0.94851 1.70000 1.38585 1.28681 1.19227 0.86287 0.80194 0.80870 0.78042 1.17894 1.20906 1.16398 1.23851 0.96742 0.89873 0.99873 0.91332 0.89859 0.92513 0.83169 0.83442 0.83744 0.84690 0.91381 0.90632 0.90802 0.92189 0.93105 0.89288 0.90695 0.91369 0.79796 0.91801 0.89934 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 9.79 71.24 0.70 -1.17 16 2 C -0.14 -2.88 5.89 -19.77 -0.12 -3.00 16 3 C -0.09 -1.43 9.70 22.25 0.22 -1.21 16 4 C -0.16 -2.35 10.04 22.28 0.22 -2.13 16 5 C -0.09 -1.52 10.04 22.25 0.22 -1.30 16 6 C -0.22 -4.37 9.04 22.37 0.20 -4.17 16 7 C 0.10 2.43 6.66 22.51 0.15 2.58 16 8 O -0.33 -8.36 9.18 -92.44 -0.85 -9.21 16 9 C 0.07 1.47 4.74 71.98 0.34 1.81 16 10 C -0.10 -2.52 5.91 30.59 0.18 -2.34 16 11 C 0.02 0.60 4.82 86.30 0.42 1.02 16 12 N -0.47 -17.40 6.33 -928.22 -5.88 -23.27 16 13 C -0.02 -1.02 6.55 83.58 0.55 -0.47 16 14 C 0.18 8.56 1.09 -11.20 -0.01 8.55 16 15 O -0.56 -26.89 13.32 -148.98 -1.98 -28.87 16 16 C -0.54 -29.87 9.27 25.60 0.24 -29.63 16 17 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 18 C 0.02 1.30 5.47 84.65 0.46 1.76 16 19 N -0.93 -54.96 13.96 21.45 0.30 -54.66 16 20 Si 0.92 41.07 24.41 68.60 1.67 42.74 16 21 H -0.25 -10.69 7.06 99.48 0.70 -9.99 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.24 -10.06 5.46 99.48 0.54 -9.52 16 24 C 0.03 1.01 7.09 83.58 0.59 1.60 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 27 H 0.06 1.17 7.53 -2.38 -0.02 1.16 16 28 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 29 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 31 H 0.14 2.36 6.30 -2.91 -0.02 2.34 16 32 H 0.07 1.39 7.65 -2.39 -0.02 1.37 16 33 H 0.08 1.43 7.67 -2.39 -0.02 1.41 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.41 7.30 -2.39 -0.02 1.39 16 37 H 0.09 2.18 8.08 -2.39 -0.02 2.16 16 38 H 0.07 3.04 7.38 -2.39 -0.02 3.02 16 39 H 0.07 2.83 7.11 -2.39 -0.02 2.81 16 40 H 0.35 16.10 3.17 -74.06 -0.23 15.87 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.08 3.09 7.87 -2.39 -0.02 3.07 16 Total: -1.00 -65.16 344.20 -1.78 -66.94 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.59 Total: 34.42 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 4.36 Total: -28.09 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -5.58 Total: -77.93 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -2.83 Total: -38.08 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.67 Total: 42.74 kcal Total: -65.16 -1.78 -66.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307710045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.178 kcal (2) G-P(sol) polarization free energy of solvation -65.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds