Wall clock time and date at job start Tue Mar 31 2020 06:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35711 * 117.00047 * 2 1 4 4 C 1.39020 * 119.91217 * 359.97438 * 3 2 1 5 5 C 1.37674 * 120.08593 * 180.30407 * 4 3 2 6 6 C 1.39758 * 119.91501 * 359.45111 * 5 4 3 7 7 C 1.47599 * 120.09179 * 180.30047 * 6 5 4 8 8 O 1.21580 * 120.00167 * 180.25266 * 7 6 5 9 9 N 1.34776 * 120.00052 * 0.24825 * 7 6 5 10 10 C 1.46498 * 120.00055 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47174 * 299.99551 * 11 10 9 13 13 C 1.52997 * 109.47364 * 59.99578 * 11 10 9 14 14 C 1.50707 * 109.47199 * 179.97438 * 11 10 9 15 15 H 1.07999 * 119.99658 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99688 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00365 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99496 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46850 * 90.00240 * 18 16 14 20 20 H 1.48499 * 109.46779 * 210.00464 * 18 16 14 21 21 H 1.48494 * 109.47088 * 330.00212 * 18 16 14 22 22 C 1.39715 * 119.81785 * 0.54839 * 6 5 4 23 23 C 1.37715 * 119.91562 * 359.72414 * 22 6 5 24 24 C 1.50700 * 119.96181 * 179.97438 * 23 22 6 25 25 H 1.08996 * 109.47331 * 300.00517 * 1 2 3 26 26 H 1.08997 * 109.46558 * 60.00342 * 1 2 3 27 27 H 1.08999 * 109.47263 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.95326 * 0.02562 * 4 3 2 29 29 H 1.07998 * 120.04516 * 179.70578 * 5 4 3 30 30 H 0.96998 * 119.99952 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47043 * 299.99966 * 10 9 7 32 32 H 1.08997 * 109.47476 * 59.99979 * 10 9 7 33 33 H 1.09001 * 109.46863 * 60.00195 * 12 11 10 34 34 H 1.09003 * 109.47451 * 179.97438 * 12 11 10 35 35 H 1.08996 * 109.47339 * 300.00498 * 12 11 10 36 36 H 1.09007 * 109.46995 * 60.00032 * 13 11 10 37 37 H 1.08996 * 109.47281 * 180.02562 * 13 11 10 38 38 H 1.09001 * 109.47267 * 300.00170 * 13 11 10 39 39 H 0.97003 * 120.00177 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.03946 * 179.75449 * 22 6 5 41 41 H 1.08999 * 109.47198 * 270.02767 * 24 23 22 42 42 H 1.09002 * 109.47072 * 30.02062 * 24 23 22 43 43 H 1.08989 * 109.47641 * 150.02681 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2862 2.3740 -0.0005 5 6 1.9075 3.6025 -0.0069 6 6 3.3031 3.6778 -0.0011 7 6 3.9732 4.9929 -0.0012 8 8 5.1873 5.0566 -0.0009 9 7 3.2392 6.1233 -0.0017 10 6 3.9043 7.4286 -0.0023 11 6 2.8506 8.5379 -0.0035 12 6 1.9769 8.4102 -1.2530 13 6 1.9759 8.4118 1.2454 14 6 3.5348 9.8807 -0.0035 15 1 4.6133 9.9372 -0.0031 16 6 2.7838 11.0370 -0.0049 17 7 1.4705 10.9682 -0.0058 18 14 3.6320 12.7014 -0.0042 19 1 3.8587 13.1420 -1.4041 20 1 2.7753 13.6931 0.6944 21 1 4.9360 12.5921 0.6977 22 6 4.0621 2.5049 -0.0006 23 6 3.4331 1.2798 0.0000 24 6 4.2509 0.0139 0.0000 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2078 2.3149 -0.0005 29 1 1.3173 4.5069 -0.0121 30 1 2.2705 6.0726 -0.0024 31 1 4.5271 7.5194 0.8876 32 1 4.5271 7.5187 -0.8923 33 1 1.4821 7.4390 -1.2526 34 1 1.2259 9.2002 -1.2536 35 1 2.6001 8.5000 -2.1428 36 1 2.5983 8.5028 2.1357 37 1 1.2249 9.2018 1.2444 38 1 1.4810 7.4406 1.2459 39 1 0.9422 11.7817 -0.0065 40 1 5.1408 2.5589 -0.0002 41 1 4.4480 -0.2913 -1.0277 42 1 5.1957 0.1917 0.5137 43 1 3.7006 -0.7742 0.5138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337597623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:30 Heat of formation + Delta-G solvation = -61.633466 kcal Electronic energy + Delta-G solvation = -23055.227526 eV Core-core repulsion = 19679.398938 eV Total energy + Delta-G solvation = -3375.828588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57959 -39.25360 -37.28867 -36.25221 -33.59756 -32.80638 -30.97194 -30.26826 -27.94129 -27.00912 -25.73783 -25.58700 -24.95744 -22.86526 -21.97699 -19.93709 -18.85903 -18.20204 -17.29602 -16.57047 -16.07393 -15.82655 -15.02540 -14.78317 -14.71810 -14.61187 -14.02562 -13.69103 -13.66050 -13.27823 -12.93564 -12.83407 -12.64475 -12.28795 -12.19850 -12.18367 -11.85560 -11.43232 -11.20932 -11.19853 -10.98171 -10.86435 -10.69793 -10.39405 -10.20871 -9.64347 -9.62053 -9.26418 -9.01187 -8.79746 -8.51021 -8.37778 -8.17338 -6.02693 -4.12634 0.91211 1.19450 2.98392 3.05040 3.28312 3.35236 3.39227 3.73759 3.93885 4.40067 4.51453 4.60962 4.80109 4.85244 4.99138 5.10316 5.16168 5.18294 5.24218 5.38406 5.49071 5.54839 5.73932 5.98324 6.11170 6.14437 6.21482 6.33167 6.37172 6.50068 6.56349 6.78038 6.80628 6.93474 7.01317 7.02487 7.11239 7.34712 7.54643 7.68898 7.99956 8.05082 8.15273 8.37921 8.69936 8.88211 9.53241 10.98804 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.003149 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.958773 B = 8888.439038 C = 9570.738468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.144 3.856 4 C -0.212 4.212 5 C -0.051 4.051 6 C -0.159 4.159 7 C 0.550 3.450 8 O -0.552 6.552 9 N -0.712 5.712 10 C 0.131 3.869 11 C 0.055 3.945 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.026 4.026 23 C -0.128 4.128 24 C -0.103 4.103 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.396 0.604 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.005 0.995 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.005 0.995 39 H 0.260 0.740 40 H 0.142 0.858 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 -20.192 0.007 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.098 3.902 4 C -0.231 4.231 5 C -0.070 4.070 6 C -0.163 4.163 7 C 0.337 3.663 8 O -0.432 6.432 9 N -0.362 5.362 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.188 4.188 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.045 4.045 23 C -0.129 4.129 24 C -0.159 4.159 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.233 0.767 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.160 0.840 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.393 -20.168 0.014 20.452 hybrid contribution -0.478 1.161 -0.022 1.256 sum -3.871 -19.007 -0.008 19.397 Atomic orbital electron populations 1.23101 0.78248 1.03989 1.01669 1.86015 1.21457 1.26892 1.88196 1.19051 0.91805 0.84168 0.95205 1.21132 1.00187 0.91944 1.09808 1.21151 0.93544 0.97572 0.94692 1.20030 0.93555 0.94169 1.08531 1.18147 0.87024 0.84030 0.77144 1.90734 1.13573 1.87653 1.51205 1.46245 1.10367 1.06535 1.73066 1.21748 0.96435 0.80253 1.00653 1.18364 0.91442 0.91892 0.92822 1.21836 1.00803 0.98580 0.97640 1.21834 1.00798 0.98578 0.97639 1.20991 0.92973 0.89656 1.50806 0.92383 1.24877 0.94839 0.99006 0.94776 1.69799 1.04187 1.27887 1.50638 0.86567 0.79533 0.83646 0.78111 1.20710 1.21272 1.19883 1.21008 1.00659 0.89491 0.93305 1.19194 0.90491 0.96182 1.07044 1.20593 0.98877 0.94086 1.02375 0.92429 0.92413 0.88203 0.84897 0.85149 0.76741 0.92549 0.92564 0.97623 0.89550 0.95370 0.95361 0.89556 0.97622 0.93011 0.83986 0.91355 0.91419 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.13 9.52 -18.84 -0.18 -3.31 16 3 C 0.14 1.65 6.67 -39.02 -0.26 1.39 16 4 C -0.21 -2.33 9.01 -39.50 -0.36 -2.69 16 5 C -0.05 -0.64 9.53 -39.22 -0.37 -1.02 16 6 C -0.16 -2.40 5.88 -104.96 -0.62 -3.02 16 7 C 0.55 10.17 7.76 -12.44 -0.10 10.07 16 8 O -0.55 -11.96 16.34 5.30 0.09 -11.87 16 9 N -0.71 -13.12 4.91 -61.33 -0.30 -13.43 16 10 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 11 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 12 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 13 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 14 C -0.51 -13.27 8.01 -34.44 -0.28 -13.54 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16 18 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 22 C -0.03 -0.35 9.23 -39.22 -0.36 -0.72 16 23 C -0.13 -1.54 5.89 -104.54 -0.62 -2.16 16 24 C -0.10 -0.97 9.78 36.01 0.35 -0.62 16 25 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 26 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.13 1.11 6.28 -52.49 -0.33 0.78 16 29 H 0.13 1.49 6.40 -52.49 -0.34 1.15 16 30 H 0.40 6.55 4.19 -40.82 -0.17 6.38 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 38 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 39 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.14 1.93 7.64 -52.48 -0.40 1.53 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 43 H 0.07 0.63 7.52 -51.94 -0.39 0.24 16 LS Contribution 345.04 15.07 5.20 5.20 Total: -1.00 -29.69 345.04 -7.16 -36.85 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.26 Total: 4.66 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.20 Total: -10.77 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.22 Total: -36.45 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.09 Total: -15.19 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.69 -7.16 -36.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337597623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.783 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds