Wall clock time and date at job start Tue Mar 31 2020 07:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38160 * 120.03268 * 2 1 4 4 C 1.38242 * 120.05911 * 180.02562 * 3 2 1 5 5 C 1.38288 * 120.10960 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.97310 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00129 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 9 7 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99813 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00047 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47231 * 89.99796 * 15 13 11 17 17 H 1.48499 * 109.47342 * 210.00322 * 15 13 11 18 18 H 1.48505 * 109.46935 * 330.00024 * 15 13 11 19 19 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 20 20 C 1.52992 * 109.47288 * 119.99477 * 19 9 7 21 21 C 1.52998 * 109.46848 * 239.99814 * 19 9 7 22 22 C 1.38125 * 120.05856 * 0.23860 * 5 4 3 23 23 C 1.38720 * 120.02410 * 180.02562 * 2 1 3 24 24 O 1.35898 * 120.05750 * 0.02562 * 23 2 1 25 25 H 1.09006 * 109.46954 * 89.99954 * 1 2 3 26 26 H 1.08995 * 109.47423 * 209.99870 * 1 2 3 27 27 H 1.08999 * 109.46836 * 330.00358 * 1 2 3 28 28 H 1.08003 * 119.97304 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.94803 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47210 * 330.00422 * 6 5 4 31 31 H 1.08994 * 109.47551 * 210.00074 * 6 5 4 32 32 H 1.09001 * 109.47567 * 210.00057 * 10 9 7 33 33 H 1.09005 * 109.47076 * 330.00563 * 10 9 7 34 34 H 0.97004 * 119.99796 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.46745 * 359.97438 * 19 9 7 36 36 H 1.09005 * 109.47280 * 60.00263 * 20 19 9 37 37 H 1.09002 * 109.46985 * 180.02562 * 20 19 9 38 38 H 1.09000 * 109.47344 * 300.00445 * 20 19 9 39 39 H 1.09006 * 109.47195 * 59.99998 * 21 19 9 40 40 H 1.09002 * 109.46792 * 179.97438 * 21 19 9 41 41 H 1.08995 * 109.47040 * 299.99526 * 21 19 9 42 42 H 1.07996 * 120.03168 * 179.72124 * 22 5 4 43 43 H 0.96702 * 113.99971 * 89.99999 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1967 -0.0005 5 6 4.2752 0.0008 -0.0005 6 6 5.7822 0.0051 -0.0017 7 6 6.2855 0.0071 1.4188 8 8 5.4981 0.0048 2.3412 9 7 7.6108 0.0053 1.6641 10 6 8.1002 0.0012 3.0449 11 6 8.2669 -1.4210 3.5145 12 1 8.0321 -2.2399 2.8506 13 6 8.7190 -1.6768 4.7917 14 7 8.8649 -2.9180 5.2013 15 14 9.1243 -0.2604 5.9402 16 1 7.9118 0.1139 6.7115 17 1 10.1989 -0.6751 6.8775 18 1 9.5844 0.9059 5.1445 19 6 8.5621 0.0077 0.5498 20 6 9.4427 1.2560 0.6337 21 6 9.4407 -1.2425 0.6269 22 6 3.5886 -1.1977 -0.0050 23 6 2.2011 -1.2011 -0.0005 24 8 1.5233 -2.3789 -0.0016 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6586 2.1315 0.0004 29 1 4.1196 2.1328 -0.0010 30 1 6.1426 0.8959 -0.5162 31 1 6.1477 -0.8840 -0.5154 32 1 9.0609 0.5141 3.0915 33 1 7.3831 0.5139 3.6861 34 1 9.1834 -3.0980 6.0997 35 1 8.0163 0.0103 -0.3937 36 1 9.9884 1.2530 1.5773 37 1 10.1501 1.2579 -0.1956 38 1 8.8167 2.1466 0.5789 39 1 8.8133 -2.1318 0.5671 40 1 10.1482 -1.2409 -0.2024 41 1 9.9864 -1.2454 1.5704 42 1 4.1313 -2.1315 -0.0095 43 1 1.3275 -2.7192 -0.8853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442585964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:28 Heat of formation + Delta-G solvation = -61.244362 kcal Electronic energy + Delta-G solvation = -23514.766805 eV Core-core repulsion = 20138.955089 eV Total energy + Delta-G solvation = -3375.811715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.08069 -39.08510 -36.78762 -35.93371 -33.52239 -32.67943 -30.98592 -29.97672 -29.83818 -27.76422 -26.77453 -25.20607 -22.65435 -22.38492 -21.43903 -20.79338 -18.32534 -17.60022 -16.86802 -16.73897 -16.07660 -15.82255 -15.21211 -14.90040 -14.54540 -14.00931 -13.81788 -13.56699 -13.38051 -13.29107 -12.83663 -12.81152 -12.44488 -12.40539 -12.13012 -11.91479 -11.72696 -11.60454 -11.49023 -11.39980 -11.19770 -10.91754 -10.86597 -10.52172 -10.38279 -10.30146 -10.07786 -9.43635 -9.04423 -8.64790 -8.54388 -8.29887 -7.67741 -6.04703 -4.01836 1.31859 1.43061 3.30706 3.36295 3.37376 3.39237 3.59589 3.93662 4.24298 4.42748 4.76753 4.86266 5.01213 5.09810 5.18385 5.22463 5.30361 5.38696 5.48109 5.50634 5.55969 5.58943 5.61586 5.71145 5.80670 5.94629 6.03725 6.08290 6.14963 6.24988 6.31012 6.41298 6.52314 6.55816 6.67521 6.79092 6.90967 6.98812 7.01637 7.40749 7.66108 7.69901 8.30600 8.51872 8.98068 9.04031 9.56181 11.08586 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.004326 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.260917 B = 6471.135909 C = 7088.006701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.111 4.111 5 C -0.044 4.044 6 C -0.105 4.105 7 C 0.508 3.492 8 O -0.531 6.531 9 N -0.590 5.590 10 C 0.216 3.784 11 C -0.520 4.520 12 H 0.076 0.924 13 C 0.071 3.929 14 N -0.898 5.898 15 Si 0.873 3.127 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.132 3.868 20 C -0.163 4.163 21 C -0.157 4.157 22 C -0.124 4.124 23 C 0.103 3.897 24 O -0.495 6.495 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 7.995 -16.960 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.119 4.119 3 C -0.125 4.125 4 C -0.129 4.129 5 C -0.045 4.045 6 C -0.145 4.145 7 C 0.295 3.705 8 O -0.407 6.407 9 N -0.322 5.322 10 C 0.095 3.905 11 C -0.559 4.559 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.700 3.300 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.191 1.191 19 C 0.028 3.972 20 C -0.221 4.221 21 C -0.215 4.215 22 C -0.142 4.142 23 C 0.058 3.942 24 O -0.304 6.304 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.145 0.855 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.646 7.941 -15.670 19.579 hybrid contribution 0.391 0.432 0.304 0.657 sum -8.255 8.372 -15.366 19.348 Atomic orbital electron populations 1.20650 0.91006 1.03091 1.01820 1.20144 0.96462 0.92670 1.02633 1.20826 0.93957 0.96986 1.00700 1.20961 0.94073 0.97499 1.00354 1.19209 0.94165 0.92863 0.98220 1.20772 0.92394 1.04512 0.96801 1.20170 0.82590 0.77589 0.90186 1.90708 1.54755 1.49229 1.46025 1.48025 1.04388 1.71684 1.08091 1.19606 0.94419 0.98369 0.78079 1.21340 1.44047 0.91254 0.99259 0.90577 1.24849 0.95217 0.95376 0.97614 1.69898 1.46818 1.18447 1.18543 0.86906 0.78531 0.83097 0.81481 1.20016 1.21167 1.19145 1.21043 0.90970 0.95733 0.89446 1.22174 0.99871 0.97377 1.02665 1.22138 0.99577 0.96968 1.02806 1.21261 0.93378 0.98454 1.01143 1.18199 0.89595 0.84716 1.01658 1.84847 1.76433 1.36172 1.32934 0.91684 0.91015 0.91671 0.85883 0.86046 0.88514 0.88360 0.95171 0.94851 0.92675 0.90430 0.91602 0.92015 0.92889 0.92454 0.93240 0.90057 0.85485 0.76140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.79 36.01 0.35 -0.74 16 2 C -0.12 -1.54 5.89 -104.47 -0.62 -2.16 16 3 C -0.11 -1.35 9.70 -39.61 -0.38 -1.73 16 4 C -0.11 -1.52 9.70 -39.56 -0.38 -1.91 16 5 C -0.04 -0.67 4.37 -104.64 -0.46 -1.12 16 6 C -0.10 -1.52 4.14 -29.03 -0.12 -1.64 16 7 C 0.51 10.35 7.67 -10.98 -0.08 10.26 16 8 O -0.53 -13.40 15.61 5.55 0.09 -13.31 16 9 N -0.59 -11.91 2.39 -167.47 -0.40 -12.31 16 10 C 0.22 5.25 3.66 -5.20 -0.02 5.23 16 11 C -0.52 -14.76 8.38 -34.44 -0.29 -15.05 16 12 H 0.08 2.36 7.87 -52.48 -0.41 1.95 16 13 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 15 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 16 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 19 C 0.13 2.04 3.17 -67.93 -0.22 1.83 16 20 C -0.16 -2.18 9.17 37.15 0.34 -1.84 16 21 C -0.16 -2.57 8.47 37.16 0.31 -2.26 16 22 C -0.12 -1.91 9.64 -39.43 -0.38 -2.29 16 23 C 0.10 1.47 6.68 -39.21 -0.26 1.21 16 24 O -0.49 -6.28 12.55 -19.42 -0.24 -6.52 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.76 7.53 -51.93 -0.39 0.36 16 27 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.10 1.10 7.73 -51.93 -0.40 0.70 16 31 H 0.10 1.26 7.73 -51.93 -0.40 0.86 16 32 H 0.03 0.70 5.49 -51.93 -0.28 0.42 16 33 H 0.03 0.89 6.85 -51.93 -0.36 0.53 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 35 H 0.08 0.96 5.77 -51.93 -0.30 0.66 16 36 H 0.06 1.00 6.66 -51.93 -0.35 0.66 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 42 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.38 2.76 9.06 45.56 0.41 3.18 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -36.01 351.52 -7.26 -43.27 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.81 Total: 3.70 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.30 Total: -10.23 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.37 Total: -39.33 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.16 Total: -19.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.01 -7.26 -43.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442585964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.971 kcal (2) G-P(sol) polarization free energy of solvation -36.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds