Wall clock time and date at job start Tue Mar 31 2020 07:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38160 * 120.03268 * 2 1 4 4 C 1.38242 * 120.05911 * 180.02562 * 3 2 1 5 5 C 1.38288 * 120.10960 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.97310 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00129 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 9 7 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99813 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00047 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47231 * 89.99796 * 15 13 11 17 17 H 1.48499 * 109.47342 * 210.00322 * 15 13 11 18 18 H 1.48505 * 109.46935 * 330.00024 * 15 13 11 19 19 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 20 20 C 1.52992 * 109.47288 * 119.99477 * 19 9 7 21 21 C 1.52998 * 109.46848 * 239.99814 * 19 9 7 22 22 C 1.38125 * 120.05856 * 0.23860 * 5 4 3 23 23 C 1.38720 * 120.02410 * 180.02562 * 2 1 3 24 24 O 1.35898 * 120.05750 * 0.02562 * 23 2 1 25 25 H 1.09006 * 109.46954 * 89.99954 * 1 2 3 26 26 H 1.08995 * 109.47423 * 209.99870 * 1 2 3 27 27 H 1.08999 * 109.46836 * 330.00358 * 1 2 3 28 28 H 1.08003 * 119.97304 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.94803 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47210 * 330.00422 * 6 5 4 31 31 H 1.08994 * 109.47551 * 210.00074 * 6 5 4 32 32 H 1.09001 * 109.47567 * 210.00057 * 10 9 7 33 33 H 1.09005 * 109.47076 * 330.00563 * 10 9 7 34 34 H 0.97004 * 119.99796 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.46745 * 359.97438 * 19 9 7 36 36 H 1.09005 * 109.47280 * 60.00263 * 20 19 9 37 37 H 1.09002 * 109.46985 * 180.02562 * 20 19 9 38 38 H 1.09000 * 109.47344 * 300.00445 * 20 19 9 39 39 H 1.09006 * 109.47195 * 59.99998 * 21 19 9 40 40 H 1.09002 * 109.46792 * 179.97438 * 21 19 9 41 41 H 1.08995 * 109.47040 * 299.99526 * 21 19 9 42 42 H 1.07996 * 120.03168 * 179.72124 * 22 5 4 43 43 H 0.96702 * 113.99971 * 89.99999 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1967 -0.0005 5 6 4.2752 0.0008 -0.0005 6 6 5.7822 0.0051 -0.0017 7 6 6.2855 0.0071 1.4188 8 8 5.4981 0.0048 2.3412 9 7 7.6108 0.0053 1.6641 10 6 8.1002 0.0012 3.0449 11 6 8.2669 -1.4210 3.5145 12 1 8.0321 -2.2399 2.8506 13 6 8.7190 -1.6768 4.7917 14 7 8.8649 -2.9180 5.2013 15 14 9.1243 -0.2604 5.9402 16 1 7.9118 0.1139 6.7115 17 1 10.1989 -0.6751 6.8775 18 1 9.5844 0.9059 5.1445 19 6 8.5621 0.0077 0.5498 20 6 9.4427 1.2560 0.6337 21 6 9.4407 -1.2425 0.6269 22 6 3.5886 -1.1977 -0.0050 23 6 2.2011 -1.2011 -0.0005 24 8 1.5233 -2.3789 -0.0016 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6586 2.1315 0.0004 29 1 4.1196 2.1328 -0.0010 30 1 6.1426 0.8959 -0.5162 31 1 6.1477 -0.8840 -0.5154 32 1 9.0609 0.5141 3.0915 33 1 7.3831 0.5139 3.6861 34 1 9.1834 -3.0980 6.0997 35 1 8.0163 0.0103 -0.3937 36 1 9.9884 1.2530 1.5773 37 1 10.1501 1.2579 -0.1956 38 1 8.8167 2.1466 0.5789 39 1 8.8133 -2.1318 0.5671 40 1 10.1482 -1.2409 -0.2024 41 1 9.9864 -1.2454 1.5704 42 1 4.1313 -2.1315 -0.0095 43 1 1.3275 -2.7192 -0.8853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442585964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:27 Heat of formation + Delta-G solvation = -86.419217 kcal Electronic energy + Delta-G solvation = -23515.858469 eV Core-core repulsion = 20138.955089 eV Total energy + Delta-G solvation = -3376.903379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28982 -40.43372 -37.91207 -37.38090 -34.96164 -34.44006 -32.56133 -31.28628 -30.86375 -29.43993 -27.96973 -26.39476 -24.26261 -23.66003 -22.77984 -21.91899 -19.71460 -19.06617 -18.73805 -18.21424 -17.15551 -17.06588 -16.58849 -16.25883 -15.99910 -15.63916 -14.99856 -14.86852 -14.77138 -14.54387 -14.16127 -14.04430 -13.86164 -13.57016 -13.47632 -13.25956 -13.09644 -12.89734 -12.70649 -12.62451 -12.52120 -12.36549 -12.26180 -12.19094 -11.92095 -11.73645 -11.53833 -11.35271 -10.80541 -10.66096 -9.70463 -9.38399 -9.33722 -8.31466 -6.33489 0.29025 0.38621 1.29533 1.34099 1.41537 1.82556 2.29210 2.30995 2.74157 3.02830 3.27871 3.68029 3.85386 3.89557 4.02582 4.06566 4.24639 4.29620 4.37589 4.44249 4.52795 4.62054 4.74177 4.77938 4.81251 4.88651 4.89127 4.92576 4.97070 5.05905 5.07963 5.10502 5.27976 5.39147 5.42827 5.48776 5.57187 5.60002 5.62033 5.72616 5.96820 6.28459 6.67095 6.76918 6.87062 7.25265 7.47292 8.85394 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.004326 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.260917 B = 6471.135909 C = 7088.006701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.125 4.125 3 C -0.108 4.108 4 C -0.119 4.119 5 C -0.064 4.064 6 C -0.091 4.091 7 C 0.499 3.501 8 O -0.591 6.591 9 N -0.595 5.595 10 C 0.226 3.774 11 C -0.518 4.518 12 H 0.032 0.968 13 C 0.009 3.991 14 N -0.947 5.947 15 Si 0.940 3.060 16 H -0.281 1.281 17 H -0.276 1.276 18 H -0.238 1.238 19 C 0.124 3.876 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.151 4.151 23 C 0.090 3.910 24 O -0.507 6.507 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.153 0.847 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.115 0.885 32 H 0.049 0.951 33 H 0.011 0.989 34 H 0.266 0.734 35 H 0.120 0.880 36 H 0.042 0.958 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.115 0.885 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 10.927 -19.118 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.126 4.126 4 C -0.137 4.137 5 C -0.064 4.064 6 C -0.130 4.130 7 C 0.288 3.712 8 O -0.472 6.472 9 N -0.326 5.326 10 C 0.104 3.896 11 C -0.557 4.557 12 H 0.050 0.950 13 C -0.188 4.188 14 N -0.588 5.588 15 Si 0.763 3.237 16 H -0.207 1.207 17 H -0.201 1.201 18 H -0.161 1.161 19 C 0.022 3.978 20 C -0.215 4.215 21 C -0.210 4.210 22 C -0.170 4.170 23 C 0.045 3.955 24 O -0.320 6.320 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.170 0.830 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.133 0.867 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.133 0.867 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -8.663 10.876 -17.902 22.667 hybrid contribution 0.333 -0.599 0.889 1.122 sum -8.330 10.277 -17.014 21.551 Atomic orbital electron populations 1.20689 0.88885 1.03243 1.03378 1.20531 0.98131 0.92280 1.01648 1.21223 0.93863 0.98068 0.99443 1.21274 0.94844 0.97705 0.99884 1.19361 0.94497 0.93302 0.99247 1.20765 0.92259 1.07228 0.92761 1.21238 0.82001 0.75822 0.92169 1.90669 1.56223 1.51849 1.48439 1.48160 1.05573 1.71191 1.07669 1.19214 0.94574 0.95265 0.80563 1.21536 1.43036 0.92372 0.98754 0.94970 1.25790 0.95275 0.98202 0.99561 1.70053 1.48532 1.20978 1.19248 0.85828 0.78197 0.80372 0.79258 1.20672 1.20082 1.16121 1.21478 0.90759 0.96221 0.89323 1.22143 1.00044 0.96386 1.02937 1.22079 0.99832 0.96708 1.02399 1.21391 0.94297 0.98458 1.02844 1.18391 0.89472 0.85725 1.01875 1.84781 1.76163 1.35972 1.35086 0.89333 0.91908 0.90426 0.82954 0.84110 0.84327 0.86681 0.93366 0.97133 0.92532 0.86277 0.93888 0.88445 0.91604 0.95002 0.89043 0.93941 0.86705 0.73604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.79 71.24 0.70 -1.18 16 2 C -0.13 -3.07 5.89 -19.77 -0.12 -3.19 16 3 C -0.11 -2.49 9.70 22.25 0.22 -2.28 16 4 C -0.12 -3.04 9.70 22.28 0.22 -2.82 16 5 C -0.06 -1.87 4.37 -19.88 -0.09 -1.95 16 6 C -0.09 -2.47 4.14 29.10 0.12 -2.35 16 7 C 0.50 20.23 7.67 87.66 0.67 20.90 16 8 O -0.59 -30.73 15.61 -3.04 -0.05 -30.78 16 9 N -0.59 -23.80 2.39 -802.14 -1.91 -25.71 16 10 C 0.23 11.13 3.66 85.63 0.31 11.45 16 11 C -0.52 -30.67 8.38 25.60 0.21 -30.45 16 12 H 0.03 2.13 7.87 -2.91 -0.02 2.10 16 13 C 0.01 0.54 5.47 84.66 0.46 1.01 16 14 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 15 Si 0.94 45.64 27.47 68.60 1.88 47.52 16 16 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 19 C 0.12 3.54 3.17 44.99 0.14 3.68 16 20 C -0.16 -3.65 9.17 71.98 0.66 -2.99 16 21 C -0.15 -4.87 8.47 71.98 0.61 -4.26 16 22 C -0.15 -4.74 9.64 22.37 0.22 -4.53 16 23 C 0.09 2.56 6.68 22.51 0.15 2.71 16 24 O -0.51 -12.89 12.55 -92.40 -1.16 -14.05 16 25 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.06 1.24 7.53 -2.39 -0.02 1.22 16 27 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 28 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 29 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.14 2.56 7.73 -2.38 -0.02 2.55 16 31 H 0.12 2.72 7.73 -2.39 -0.02 2.71 16 32 H 0.05 2.20 5.49 -2.39 -0.01 2.19 16 33 H 0.01 0.57 6.85 -2.38 -0.02 0.56 16 34 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 35 H 0.12 2.43 5.77 -2.38 -0.01 2.42 16 36 H 0.04 1.19 6.66 -2.38 -0.02 1.18 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.04 1.68 6.92 -2.39 -0.02 1.66 16 42 H 0.11 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.41 5.68 9.06 -74.06 -0.67 5.00 16 Total: -1.00 -84.50 351.52 3.83 -80.67 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.28 Total: 19.37 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 4.49 Total: -16.26 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.62 Total: -86.47 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -1.21 Total: -44.83 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -84.50 3.83 -80.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442585964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.754 kcal (2) G-P(sol) polarization free energy of solvation -84.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds