Wall clock time and date at job start Tue Mar 31 2020 07:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35707 * 117.00390 * 2 1 4 4 C 1.39027 * 119.90644 * 0.02562 * 3 2 1 5 5 C 1.37675 * 120.08323 * 180.30140 * 4 3 2 6 6 C 1.39757 * 119.91510 * 359.44927 * 5 4 3 7 7 C 1.47597 * 120.08989 * 180.30098 * 6 5 4 8 8 O 1.21588 * 120.00162 * 224.85877 * 7 6 5 9 9 N 1.34780 * 120.00196 * 44.85670 * 7 6 5 10 10 C 1.46502 * 119.99914 * 185.73051 * 9 7 6 11 11 C 1.50695 * 109.47047 * 90.00220 * 10 9 7 12 12 H 1.07995 * 120.00104 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99896 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00287 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99889 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47428 * 59.99988 * 15 13 11 17 17 H 1.48508 * 109.46912 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47173 * 299.99878 * 15 13 11 19 19 C 1.46497 * 119.99744 * 5.73503 * 9 7 6 20 20 C 1.53006 * 109.47305 * 125.17103 * 19 9 7 21 21 C 1.53008 * 109.46650 * 245.16842 * 19 9 7 22 22 C 1.39716 * 119.82108 * 0.54404 * 6 5 4 23 23 C 1.37722 * 119.91021 * 359.73283 * 22 6 5 24 24 C 1.50699 * 119.95422 * 179.97438 * 23 22 6 25 25 H 1.08997 * 109.47033 * 299.99825 * 1 2 3 26 26 H 1.08995 * 109.47422 * 60.00021 * 1 2 3 27 27 H 1.09005 * 109.47194 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.95522 * 0.02562 * 4 3 2 29 29 H 1.08008 * 120.04118 * 179.70052 * 5 4 3 30 30 H 1.09006 * 109.47048 * 210.00191 * 10 9 7 31 31 H 1.09003 * 109.47015 * 329.99853 * 10 9 7 32 32 H 0.96997 * 120.00257 * 180.02562 * 14 13 11 33 33 H 1.08996 * 109.47154 * 5.16207 * 19 9 7 34 34 H 1.09001 * 109.47060 * 59.99316 * 20 19 9 35 35 H 1.08995 * 109.46910 * 179.97438 * 20 19 9 36 36 H 1.08999 * 109.46619 * 299.99492 * 20 19 9 37 37 H 1.08994 * 109.46911 * 60.00192 * 21 19 9 38 38 H 1.08995 * 109.46851 * 180.02562 * 21 19 9 39 39 H 1.08996 * 109.46824 * 299.99568 * 21 19 9 40 40 H 1.07999 * 120.04208 * 179.74795 * 22 6 5 41 41 H 1.09014 * 109.46820 * 270.01880 * 24 23 22 42 42 H 1.08992 * 109.47421 * 30.01905 * 24 23 22 43 43 H 1.09000 * 109.47214 * 150.02333 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9075 3.6025 -0.0057 6 6 3.3030 3.6778 -0.0010 7 6 3.9731 4.9929 -0.0010 8 8 4.9167 5.1944 -0.7408 9 7 3.5390 5.9705 0.8191 10 6 4.1203 7.3123 0.7311 11 6 3.3339 8.1368 -0.2552 12 1 2.4862 7.7044 -0.7657 13 6 3.6967 9.4432 -0.5057 14 7 4.7293 9.9696 0.1157 15 14 2.7214 10.4654 -1.7278 16 1 1.3107 10.5654 -1.2751 17 1 3.3108 11.8256 -1.8170 18 1 2.7680 9.8177 -3.0633 19 6 2.4858 5.6911 1.7984 20 6 2.9731 6.0789 3.1960 21 6 1.2370 6.5036 1.4500 22 6 4.0621 2.5049 -0.0014 23 6 3.4331 1.2797 -0.0009 24 6 4.2509 0.0139 -0.0020 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.2078 2.3149 0.0014 29 1 1.3171 4.5069 -0.0102 30 1 4.0861 7.7881 1.7113 31 1 5.1559 7.2386 0.3990 32 1 4.9843 10.8888 -0.0603 33 1 2.2447 4.6283 1.7794 34 1 3.2142 7.1417 3.2148 35 1 2.1894 5.8714 3.9245 36 1 3.8627 5.5000 3.4441 37 1 0.8899 6.2274 0.4544 38 1 0.4536 6.2962 2.1789 39 1 1.4781 7.5664 1.4690 40 1 5.1408 2.5589 -0.0019 41 1 4.4473 -0.2909 -1.0300 42 1 5.1960 0.1915 0.5111 43 1 3.7009 -0.7744 0.5120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519273437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:31 Heat of formation + Delta-G solvation = -49.951115 kcal Electronic energy + Delta-G solvation = -23878.741921 eV Core-core repulsion = 20503.419918 eV Total energy + Delta-G solvation = -3375.322004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49031 -39.17596 -37.03293 -35.94815 -33.09979 -32.62745 -30.83527 -30.31393 -27.91383 -27.49443 -26.94122 -26.26044 -23.59957 -22.20452 -21.86505 -20.87540 -18.37515 -18.04791 -16.81815 -16.52202 -16.20629 -15.93451 -15.23777 -14.60784 -14.50791 -14.18487 -14.00264 -13.58919 -13.54049 -13.33743 -12.94113 -12.63315 -12.52847 -12.19750 -12.15079 -12.03060 -11.88928 -11.65073 -11.43533 -11.37053 -11.05225 -10.93089 -10.84135 -10.70324 -10.51490 -10.33490 -10.00580 -9.54566 -8.97170 -8.81394 -8.40243 -8.05117 -7.61043 -6.01834 -4.05518 1.21065 1.35655 3.12468 3.31713 3.33295 3.37158 3.41085 3.87274 4.01569 4.46268 4.69689 4.76103 4.93468 4.94575 4.98000 5.22173 5.30084 5.30486 5.32452 5.35562 5.53802 5.57245 5.61799 5.66333 5.72314 5.89368 6.03043 6.09384 6.16274 6.26179 6.29434 6.35255 6.37032 6.55535 6.63115 6.71676 6.94995 7.15916 7.27745 7.50777 7.59580 7.95165 8.26985 8.46222 8.92139 9.11013 9.58541 11.06189 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.004240 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.537196 B = 6602.619646 C = 6758.577751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.134 3.866 4 C -0.212 4.212 5 C -0.057 4.057 6 C -0.146 4.146 7 C 0.550 3.450 8 O -0.539 6.539 9 N -0.585 5.585 10 C 0.244 3.756 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.126 3.874 20 C -0.161 4.161 21 C -0.161 4.161 22 C -0.038 4.038 23 C -0.126 4.126 24 C -0.101 4.101 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.130 0.870 29 H 0.137 0.863 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.209 -18.097 4.540 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.089 3.911 4 C -0.230 4.230 5 C -0.076 4.076 6 C -0.149 4.149 7 C 0.337 3.663 8 O -0.417 6.417 9 N -0.316 5.316 10 C 0.125 3.875 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.203 1.203 19 C 0.021 3.979 20 C -0.219 4.219 21 C -0.219 4.219 22 C -0.056 4.056 23 C -0.126 4.126 24 C -0.158 4.158 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.148 0.852 29 H 0.155 0.845 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.153 0.847 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.510 -17.969 4.186 20.318 hybrid contribution -0.955 0.936 -0.724 1.520 sum -9.465 -17.033 3.463 19.792 Atomic orbital electron populations 1.23059 0.78536 1.03748 1.01534 1.85997 1.21211 1.27027 1.88512 1.18976 0.91739 0.84054 0.96347 1.21112 0.99926 0.91969 1.10028 1.21347 0.93597 0.97806 0.94812 1.20144 0.93860 0.94595 1.06311 1.18103 0.83628 0.83439 0.81148 1.90759 1.28268 1.81871 1.40820 1.48239 1.37180 1.12228 1.33948 1.19296 0.95115 0.75662 0.97413 1.21402 1.14035 0.96433 1.24171 0.92426 1.24915 0.95193 0.97754 0.96182 1.69918 1.26162 1.14793 1.42481 0.86616 0.80003 0.79226 0.81917 1.20287 1.21229 1.20253 1.21203 0.88450 0.99427 0.88794 1.22134 1.00802 1.03264 0.95653 1.22243 0.96028 1.03419 1.00237 1.20918 1.00148 0.89644 0.94924 1.19126 0.90479 0.96003 1.07028 1.20579 0.98780 0.94175 1.02278 0.92571 0.92574 0.88391 0.85183 0.84524 0.94518 0.93871 0.92723 0.90006 0.91122 0.92336 0.92858 0.92916 0.93111 0.89781 0.84661 0.91452 0.91579 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.50 9.52 -18.82 -0.18 -3.68 16 3 C 0.13 1.73 6.67 -39.02 -0.26 1.47 16 4 C -0.21 -2.66 9.01 -39.49 -0.36 -3.01 16 5 C -0.06 -0.86 7.39 -39.22 -0.29 -1.15 16 6 C -0.15 -2.56 4.95 -104.96 -0.52 -3.08 16 7 C 0.55 12.15 7.23 -12.44 -0.09 12.06 16 8 O -0.54 -14.20 16.53 5.29 0.09 -14.11 16 9 N -0.58 -12.60 2.39 -168.66 -0.40 -13.00 16 10 C 0.24 6.33 4.77 -5.19 -0.02 6.31 16 11 C -0.52 -14.46 7.85 -34.44 -0.27 -14.73 16 12 H 0.06 1.59 7.59 -52.49 -0.40 1.19 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 C 0.13 2.12 2.40 -67.92 -0.16 1.96 16 20 C -0.16 -2.48 9.07 37.16 0.34 -2.14 16 21 C -0.16 -2.62 8.22 37.16 0.31 -2.32 16 22 C -0.04 -0.59 9.32 -39.22 -0.37 -0.95 16 23 C -0.13 -1.70 5.89 -104.54 -0.62 -2.31 16 24 C -0.10 -1.09 9.78 36.01 0.35 -0.74 16 25 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 26 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.13 1.26 6.28 -52.49 -0.33 0.94 16 29 H 0.14 2.02 5.09 -52.48 -0.27 1.76 16 30 H 0.04 0.96 6.17 -51.93 -0.32 0.64 16 31 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.08 1.24 4.78 -51.93 -0.25 1.00 16 34 H 0.07 1.22 6.52 -51.93 -0.34 0.88 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.86 6.53 -51.93 -0.34 0.52 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.61 6.93 -51.93 -0.36 1.25 16 40 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 41 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 43 H 0.07 0.69 7.52 -51.93 -0.39 0.30 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -32.97 345.61 -6.90 -39.87 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.26 Total: 0.46 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.07 Total: -5.81 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.33 Total: -38.66 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.09 Total: -17.79 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.97 -6.90 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519273437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.084 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds