Wall clock time and date at job start Tue Mar 31 2020 07:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35707 * 117.00390 * 2 1 4 4 C 1.39027 * 119.90644 * 0.02562 * 3 2 1 5 5 C 1.37675 * 120.08323 * 180.30140 * 4 3 2 6 6 C 1.39757 * 119.91510 * 359.44927 * 5 4 3 7 7 C 1.47597 * 120.08989 * 180.30098 * 6 5 4 8 8 O 1.21588 * 120.00162 * 224.85877 * 7 6 5 9 9 N 1.34780 * 120.00196 * 44.85670 * 7 6 5 10 10 C 1.46502 * 119.99914 * 185.73051 * 9 7 6 11 11 C 1.50695 * 109.47047 * 90.00220 * 10 9 7 12 12 H 1.07995 * 120.00104 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99896 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00287 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99889 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47428 * 59.99988 * 15 13 11 17 17 H 1.48508 * 109.46912 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47173 * 299.99878 * 15 13 11 19 19 C 1.46497 * 119.99744 * 5.73503 * 9 7 6 20 20 C 1.53006 * 109.47305 * 125.17103 * 19 9 7 21 21 C 1.53008 * 109.46650 * 245.16842 * 19 9 7 22 22 C 1.39716 * 119.82108 * 0.54404 * 6 5 4 23 23 C 1.37722 * 119.91021 * 359.73283 * 22 6 5 24 24 C 1.50699 * 119.95422 * 179.97438 * 23 22 6 25 25 H 1.08997 * 109.47033 * 299.99825 * 1 2 3 26 26 H 1.08995 * 109.47422 * 60.00021 * 1 2 3 27 27 H 1.09005 * 109.47194 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.95522 * 0.02562 * 4 3 2 29 29 H 1.08008 * 120.04118 * 179.70052 * 5 4 3 30 30 H 1.09006 * 109.47048 * 210.00191 * 10 9 7 31 31 H 1.09003 * 109.47015 * 329.99853 * 10 9 7 32 32 H 0.96997 * 120.00257 * 180.02562 * 14 13 11 33 33 H 1.08996 * 109.47154 * 5.16207 * 19 9 7 34 34 H 1.09001 * 109.47060 * 59.99316 * 20 19 9 35 35 H 1.08995 * 109.46910 * 179.97438 * 20 19 9 36 36 H 1.08999 * 109.46619 * 299.99492 * 20 19 9 37 37 H 1.08994 * 109.46911 * 60.00192 * 21 19 9 38 38 H 1.08995 * 109.46851 * 180.02562 * 21 19 9 39 39 H 1.08996 * 109.46824 * 299.99568 * 21 19 9 40 40 H 1.07999 * 120.04208 * 179.74795 * 22 6 5 41 41 H 1.09014 * 109.46820 * 270.01880 * 24 23 22 42 42 H 1.08992 * 109.47421 * 30.01905 * 24 23 22 43 43 H 1.09000 * 109.47214 * 150.02333 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9075 3.6025 -0.0057 6 6 3.3030 3.6778 -0.0010 7 6 3.9731 4.9929 -0.0010 8 8 4.9167 5.1944 -0.7408 9 7 3.5390 5.9705 0.8191 10 6 4.1203 7.3123 0.7311 11 6 3.3339 8.1368 -0.2552 12 1 2.4862 7.7044 -0.7657 13 6 3.6967 9.4432 -0.5057 14 7 4.7293 9.9696 0.1157 15 14 2.7214 10.4654 -1.7278 16 1 1.3107 10.5654 -1.2751 17 1 3.3108 11.8256 -1.8170 18 1 2.7680 9.8177 -3.0633 19 6 2.4858 5.6911 1.7984 20 6 2.9731 6.0789 3.1960 21 6 1.2370 6.5036 1.4500 22 6 4.0621 2.5049 -0.0014 23 6 3.4331 1.2797 -0.0009 24 6 4.2509 0.0139 -0.0020 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.2078 2.3149 0.0014 29 1 1.3171 4.5069 -0.0102 30 1 4.0861 7.7881 1.7113 31 1 5.1559 7.2386 0.3990 32 1 4.9843 10.8888 -0.0603 33 1 2.2447 4.6283 1.7794 34 1 3.2142 7.1417 3.2148 35 1 2.1894 5.8714 3.9245 36 1 3.8627 5.5000 3.4441 37 1 0.8899 6.2274 0.4544 38 1 0.4536 6.2962 2.1789 39 1 1.4781 7.5664 1.4690 40 1 5.1408 2.5589 -0.0019 41 1 4.4473 -0.2909 -1.0300 42 1 5.1960 0.1915 0.5111 43 1 3.7009 -0.7744 0.5120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519273437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:31 Heat of formation + Delta-G solvation = -70.299687 kcal Electronic energy + Delta-G solvation = -23879.624301 eV Core-core repulsion = 20503.419918 eV Total energy + Delta-G solvation = -3376.204384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67742 -40.54328 -38.14600 -37.62938 -34.98025 -33.89865 -32.47326 -31.54893 -29.39237 -28.46894 -28.24631 -27.43631 -25.34482 -23.77031 -22.92654 -22.25324 -19.89436 -18.99132 -18.60210 -18.25910 -17.43347 -16.97302 -16.68774 -16.36874 -15.78887 -15.57638 -15.28290 -14.92571 -14.67719 -14.44848 -14.32060 -14.03040 -13.78379 -13.76811 -13.38505 -13.30173 -12.97234 -12.95972 -12.83396 -12.72677 -12.60015 -12.50661 -12.26543 -12.14728 -11.99153 -11.74969 -11.65821 -11.49523 -10.71030 -10.60087 -9.90540 -9.48887 -9.09395 -8.19022 -6.31642 0.02286 0.27259 1.36442 1.40849 1.47648 1.84067 2.25794 2.32617 2.43259 2.70450 3.10576 3.60099 3.71880 3.82195 3.97778 4.16362 4.22542 4.28047 4.40556 4.44709 4.47236 4.51501 4.63733 4.80021 4.80777 4.83877 4.84240 4.86432 4.98357 5.01946 5.09815 5.14703 5.21624 5.25372 5.32147 5.40488 5.43702 5.57229 5.63789 5.67003 5.88319 6.10498 6.37761 6.71780 6.78752 7.28036 7.44311 8.88366 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.004240 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.537196 B = 6602.619646 C = 6758.577751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.145 3.855 4 C -0.199 4.199 5 C -0.058 4.058 6 C -0.172 4.172 7 C 0.542 3.458 8 O -0.600 6.600 9 N -0.587 5.587 10 C 0.261 3.739 11 C -0.529 4.529 12 H 0.056 0.944 13 C 0.008 3.992 14 N -0.930 5.930 15 Si 0.963 3.037 16 H -0.258 1.258 17 H -0.281 1.281 18 H -0.280 1.280 19 C 0.119 3.881 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.046 4.046 23 C -0.129 4.129 24 C -0.100 4.100 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.122 0.878 28 H 0.167 0.833 29 H 0.138 0.862 30 H 0.031 0.969 31 H -0.008 1.008 32 H 0.266 0.734 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.098 0.902 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.769 -20.359 4.920 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.099 3.901 4 C -0.218 4.218 5 C -0.076 4.076 6 C -0.175 4.175 7 C 0.332 3.668 8 O -0.483 6.483 9 N -0.316 5.316 10 C 0.140 3.860 11 C -0.568 4.568 12 H 0.074 0.926 13 C -0.191 4.191 14 N -0.570 5.570 15 Si 0.787 3.213 16 H -0.182 1.182 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.017 3.983 20 C -0.214 4.214 21 C -0.213 4.213 22 C -0.065 4.065 23 C -0.130 4.130 24 C -0.156 4.156 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.140 0.860 28 H 0.184 0.816 29 H 0.156 0.844 30 H 0.049 0.951 31 H 0.010 0.990 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.063 0.937 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.123 -20.260 4.606 24.055 hybrid contribution 0.096 1.462 -0.803 1.671 sum -12.027 -18.798 3.803 22.638 Atomic orbital electron populations 1.23444 0.76137 1.05896 1.02608 1.86016 1.23604 1.25805 1.87765 1.19082 0.91617 0.85003 0.94427 1.21385 1.01626 0.90549 1.08209 1.21341 0.92153 0.99105 0.95017 1.19782 0.95091 0.92224 1.10437 1.18914 0.82933 0.85046 0.79935 1.90702 1.31106 1.83232 1.43223 1.48260 1.37987 1.10524 1.34877 1.18749 0.92597 0.78132 0.96503 1.21620 1.13942 0.96899 1.24339 0.92557 1.25812 0.96202 0.99058 0.98028 1.70050 1.27707 1.15223 1.43994 0.85544 0.79383 0.77426 0.78930 1.18241 1.20572 1.20573 1.21581 0.87401 1.01160 0.88152 1.22113 1.02123 1.01379 0.95794 1.22177 0.96668 1.00870 1.01569 1.20890 0.99833 0.90124 0.95673 1.19351 0.91511 0.95917 1.06173 1.20628 0.98914 0.93086 1.02987 0.91169 0.91697 0.85964 0.81601 0.84394 0.95131 0.99018 0.92561 0.87431 0.93748 0.88296 0.93148 0.93112 0.88811 0.93230 0.85637 0.90771 0.90889 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -5.78 9.52 -90.27 -0.86 -6.63 16 3 C 0.15 3.26 6.67 22.63 0.15 3.41 16 4 C -0.20 -4.27 9.01 22.33 0.20 -4.07 16 5 C -0.06 -1.63 7.39 22.50 0.17 -1.46 16 6 C -0.17 -6.11 4.95 -20.08 -0.10 -6.21 16 7 C 0.54 25.27 7.23 86.71 0.63 25.89 16 8 O -0.60 -34.09 16.53 -3.99 -0.07 -34.16 16 9 N -0.59 -26.44 2.39 -805.77 -1.92 -28.36 16 10 C 0.26 14.46 4.77 85.63 0.41 14.87 16 11 C -0.53 -30.54 7.85 25.60 0.20 -30.34 16 12 H 0.06 3.19 7.59 -2.91 -0.02 3.17 16 13 C 0.01 0.44 5.46 84.66 0.46 0.91 16 14 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 15 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 16 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 C 0.12 3.98 2.40 45.00 0.11 4.08 16 20 C -0.16 -4.73 9.07 71.98 0.65 -4.08 16 21 C -0.16 -4.82 8.22 71.98 0.59 -4.23 16 22 C -0.05 -1.46 9.32 22.51 0.21 -1.25 16 23 C -0.13 -3.25 5.89 -19.81 -0.12 -3.37 16 24 C -0.10 -1.94 9.78 71.24 0.70 -1.24 16 25 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 26 H 0.06 0.55 7.65 -2.39 -0.02 0.53 16 27 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.17 2.33 6.28 -2.91 -0.02 2.32 16 29 H 0.14 3.82 5.09 -2.91 -0.01 3.80 16 30 H 0.03 1.71 6.17 -2.38 -0.01 1.70 16 31 H -0.01 -0.54 7.35 -2.39 -0.02 -0.56 16 32 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.11 3.08 4.78 -2.39 -0.01 3.07 16 34 H 0.04 1.57 6.52 -2.39 -0.02 1.55 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.58 6.53 -2.39 -0.02 1.56 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.89 6.93 -2.39 -0.02 1.88 16 40 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 43 H 0.08 1.38 7.52 -2.39 -0.02 1.36 16 Total: -1.00 -76.98 345.61 5.84 -71.14 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.01 Total: 13.23 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.37 Total: -5.84 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.64 Total: -85.01 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.93 Total: -40.79 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.98 5.84 -71.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519273437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.839 kcal (2) G-P(sol) polarization free energy of solvation -76.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds