Wall clock time and date at job start Tue Mar 31 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38253 * 120.00093 * 2 1 4 4 C 1.38216 * 120.00175 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99633 * 359.74239 * 4 3 2 6 6 C 1.38211 * 120.00231 * 0.50807 * 5 4 3 7 7 C 1.50705 * 120.00258 * 179.76463 * 6 5 4 8 8 H 1.09000 * 109.46749 * 159.73025 * 7 6 5 9 9 N 1.46892 * 109.46899 * 39.72740 * 7 6 5 10 10 C 1.46901 * 111.00176 * 154.99874 * 9 7 6 11 11 C 1.52991 * 109.47639 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47858 * 305.00269 * 11 10 9 13 13 C 1.53009 * 109.47033 * 65.00277 * 11 10 9 14 14 C 1.53001 * 109.47667 * 185.00161 * 11 10 9 15 15 C 1.50701 * 109.47383 * 175.00340 * 14 11 10 16 16 H 1.07991 * 120.00243 * 0.02562 * 15 14 11 17 17 C 1.37874 * 119.99656 * 180.02562 * 15 14 11 18 18 N 1.31523 * 120.00304 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99749 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47364 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47010 * 119.99782 * 19 17 15 22 22 H 1.48503 * 109.47143 * 239.99604 * 19 17 15 23 23 C 1.50706 * 109.47164 * 279.72724 * 7 6 5 24 24 O 1.20825 * 119.99859 * 119.99456 * 23 7 6 25 25 O 1.34224 * 120.00295 * 300.00415 * 23 7 6 26 26 C 1.38213 * 119.99958 * 179.97438 * 2 1 3 27 27 H 1.09009 * 109.46997 * 270.02237 * 1 2 3 28 28 H 1.09000 * 109.46906 * 30.01924 * 1 2 3 29 29 H 1.09003 * 109.47231 * 150.02376 * 1 2 3 30 30 H 1.08001 * 120.00204 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.00291 * 180.02562 * 4 3 2 32 32 H 1.08001 * 120.00289 * 180.27949 * 5 4 3 33 33 H 1.00904 * 111.00200 * 31.05199 * 9 7 6 34 34 H 1.09001 * 109.47542 * 300.00763 * 10 9 7 35 35 H 1.09003 * 109.46998 * 60.00166 * 10 9 7 36 36 H 1.08998 * 109.46626 * 60.00110 * 13 11 10 37 37 H 1.08996 * 109.47240 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.46657 * 300.00302 * 13 11 10 39 39 H 1.09005 * 109.46957 * 295.00810 * 14 11 10 40 40 H 1.09006 * 109.46967 * 54.99895 * 14 11 10 41 41 H 0.97000 * 119.99804 * 180.02562 * 18 17 15 42 42 H 0.96700 * 117.00196 * 179.97438 * 25 23 7 43 43 H 1.08000 * 120.00284 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0065 6 6 3.5806 -1.1970 0.0012 7 6 4.3341 -2.5021 0.0023 8 1 3.6792 -3.2993 0.3540 9 7 5.4973 -2.3952 0.8929 10 6 5.9026 -3.7165 1.3907 11 6 7.1144 -3.5648 2.3121 12 1 7.9087 -3.0370 1.7842 13 6 6.7129 -2.7695 3.5561 14 6 7.6132 -4.9493 2.7311 15 6 8.8781 -4.8048 3.5375 16 1 9.2853 -3.8237 3.7321 17 6 9.5154 -5.9252 4.0267 18 7 9.0192 -7.1200 3.7901 19 14 11.0837 -5.7462 5.0257 20 1 11.4302 -4.3075 5.1495 21 1 10.8775 -6.3233 6.3784 22 1 12.1897 -6.4654 4.3440 23 6 4.7995 -2.8147 -1.3966 24 8 5.9792 -2.9358 -1.6279 25 8 3.9035 -2.9583 -2.3856 26 6 2.1981 -1.1970 0.0005 27 1 -0.3633 0.0004 1.0278 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 0.0010 32 1 5.3516 -0.0001 0.0114 33 1 5.3111 -1.7627 1.6567 34 1 5.0780 -4.1646 1.9450 35 1 6.1648 -4.3572 0.5487 36 1 5.9188 -3.2974 4.0840 37 1 7.5761 -2.6618 4.2128 38 1 6.3576 -1.7832 3.2576 39 1 6.8515 -5.4424 3.3351 40 1 7.8152 -5.5470 1.8422 41 1 9.4675 -7.9082 4.1347 42 1 4.2498 -3.1580 -3.2661 43 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594398011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:24 Heat of formation + Delta-G solvation = -83.167960 kcal Electronic energy + Delta-G solvation = -22921.288951 eV Core-core repulsion = 19544.526557 eV Total energy + Delta-G solvation = -3376.762394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56683 -39.31134 -37.08710 -35.87339 -34.57632 -32.79851 -32.19188 -30.85641 -27.59648 -27.06818 -26.58347 -25.04312 -22.92979 -22.14491 -21.91851 -20.32215 -18.99534 -17.99867 -17.00591 -16.50286 -16.34927 -15.88647 -15.50761 -15.00357 -14.64864 -14.52225 -14.12259 -13.93271 -13.73298 -13.31627 -13.22073 -12.76522 -12.51954 -12.50353 -12.24446 -12.18095 -11.76547 -11.49641 -11.39099 -11.26944 -11.10656 -10.85710 -10.73463 -10.54658 -10.31016 -10.19043 -9.70421 -9.17558 -9.02046 -8.92843 -8.79523 -8.35967 -8.30049 -5.94913 -3.95748 1.06194 1.20259 2.32649 2.93811 3.34371 3.41847 3.46115 3.54364 4.25240 4.42149 4.51539 4.64235 4.70251 4.96652 5.02507 5.11622 5.29723 5.31767 5.35179 5.41081 5.44456 5.56895 5.72510 5.76746 5.78756 5.92803 6.04936 6.20024 6.28265 6.32882 6.36555 6.45538 6.53066 6.58481 6.78727 6.86016 7.11442 7.18134 7.22065 7.48693 7.73352 7.88688 8.02274 8.05493 8.49202 9.10687 9.67512 11.16749 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023496 B = 0.003161 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.416771 B = 8855.842957 C = 9348.697831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.115 4.115 4 C -0.118 4.118 5 C -0.100 4.100 6 C -0.089 4.089 7 C 0.142 3.858 8 H 0.088 0.912 9 N -0.666 5.666 10 C 0.064 3.936 11 C -0.082 4.082 12 H 0.068 0.932 13 C -0.135 4.135 14 C 0.028 3.972 15 C -0.511 4.511 16 H 0.057 0.943 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.480 3.520 24 O -0.482 6.482 25 O -0.521 6.521 26 C -0.097 4.097 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.354 0.646 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.014 0.986 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.407 0.593 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.199 14.901 -9.636 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.136 4.136 5 C -0.119 4.119 6 C -0.090 4.090 7 C 0.030 3.970 8 H 0.105 0.895 9 N -0.301 5.301 10 C -0.064 4.064 11 C -0.101 4.101 12 H 0.087 0.913 13 C -0.192 4.192 14 C -0.009 4.009 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.211 1.211 23 C 0.319 3.681 24 O -0.366 6.366 25 O -0.333 6.333 26 C -0.115 4.115 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.177 0.823 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.033 0.967 40 H 0.034 0.966 41 H 0.068 0.932 42 H 0.265 0.735 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.515 14.768 -9.773 24.907 hybrid contribution 0.496 -0.434 0.572 0.873 sum -17.019 14.334 -9.201 24.078 Atomic orbital electron populations 1.20785 0.91079 1.02789 1.02366 1.19859 0.96097 0.92950 1.00181 1.21085 0.94335 0.97481 1.00439 1.21156 0.94208 0.98055 1.00196 1.21170 1.00973 0.91452 0.98263 1.19487 0.93419 0.93351 1.02725 1.19762 0.92132 0.95983 0.89113 0.89501 1.60146 1.33275 1.13916 1.22812 1.22290 0.97868 0.87944 0.98338 1.21202 0.94924 1.00196 0.93775 0.91319 1.21758 1.01428 0.97376 0.98641 1.19113 0.95833 0.89735 0.96268 1.21268 1.08612 0.92596 1.32420 0.92471 1.25024 0.97586 0.95423 0.96578 1.69982 1.39905 0.97581 1.46241 0.86570 0.83617 0.78142 0.79882 1.19737 1.21156 1.21095 1.23303 0.84217 0.73278 0.87308 1.90753 1.18343 1.44411 1.83068 1.84512 1.43550 1.83547 1.21699 1.20898 0.92985 0.97971 0.99688 0.91151 0.91597 0.91450 0.86122 0.85782 0.84757 0.82303 0.95359 0.91056 0.93949 0.91708 0.95008 0.96735 0.96601 0.93184 0.73497 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.09 -0.82 5.88 -104.63 -0.62 -1.43 16 3 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.10 -1.13 9.00 -39.59 -0.36 -1.49 16 6 C -0.09 -1.02 4.64 -104.62 -0.49 -1.51 16 7 C 0.14 1.84 2.73 -70.02 -0.19 1.65 16 8 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 9 N -0.67 -10.03 5.22 -109.19 -0.57 -10.60 16 10 C 0.06 1.13 4.84 -3.83 -0.02 1.11 16 11 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 12 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 13 C -0.13 -2.50 8.78 37.16 0.33 -2.17 16 14 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 15 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 16 H 0.06 1.58 7.05 -52.49 -0.37 1.21 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.48 6.81 7.49 36.01 0.27 7.07 16 24 O -0.48 -8.66 16.68 -18.75 -0.31 -8.97 16 25 O -0.52 -5.64 13.34 -39.24 -0.52 -6.17 16 26 C -0.10 -0.98 9.33 -39.58 -0.37 -1.34 16 27 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 29 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 1.61 7.71 -52.49 -0.40 1.21 16 33 H 0.35 4.90 6.23 -39.29 -0.24 4.65 16 34 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 35 H 0.07 1.39 7.62 -51.93 -0.40 1.00 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 38 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.41 2.76 9.10 45.56 0.41 3.17 16 43 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -33.55 359.08 -8.76 -42.31 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.88 Total: 3.67 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -2.60 Total: -16.04 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.17 Total: -37.18 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.84 Total: -15.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.55 -8.76 -42.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594398011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.860 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds