Wall clock time and date at job start Tue Mar 31 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38253 * 120.00093 * 2 1 4 4 C 1.38216 * 120.00175 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99633 * 359.74239 * 4 3 2 6 6 C 1.38211 * 120.00231 * 0.50807 * 5 4 3 7 7 C 1.50705 * 120.00258 * 179.76463 * 6 5 4 8 8 H 1.09000 * 109.46749 * 159.73025 * 7 6 5 9 9 N 1.46892 * 109.46899 * 39.72740 * 7 6 5 10 10 C 1.46901 * 111.00176 * 154.99874 * 9 7 6 11 11 C 1.52991 * 109.47639 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47858 * 305.00269 * 11 10 9 13 13 C 1.53009 * 109.47033 * 65.00277 * 11 10 9 14 14 C 1.53001 * 109.47667 * 185.00161 * 11 10 9 15 15 C 1.50701 * 109.47383 * 175.00340 * 14 11 10 16 16 H 1.07991 * 120.00243 * 0.02562 * 15 14 11 17 17 C 1.37874 * 119.99656 * 180.02562 * 15 14 11 18 18 N 1.31523 * 120.00304 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99749 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47364 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47010 * 119.99782 * 19 17 15 22 22 H 1.48503 * 109.47143 * 239.99604 * 19 17 15 23 23 C 1.50706 * 109.47164 * 279.72724 * 7 6 5 24 24 O 1.20825 * 119.99859 * 119.99456 * 23 7 6 25 25 O 1.34224 * 120.00295 * 300.00415 * 23 7 6 26 26 C 1.38213 * 119.99958 * 179.97438 * 2 1 3 27 27 H 1.09009 * 109.46997 * 270.02237 * 1 2 3 28 28 H 1.09000 * 109.46906 * 30.01924 * 1 2 3 29 29 H 1.09003 * 109.47231 * 150.02376 * 1 2 3 30 30 H 1.08001 * 120.00204 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.00291 * 180.02562 * 4 3 2 32 32 H 1.08001 * 120.00289 * 180.27949 * 5 4 3 33 33 H 1.00904 * 111.00200 * 31.05199 * 9 7 6 34 34 H 1.09001 * 109.47542 * 300.00763 * 10 9 7 35 35 H 1.09003 * 109.46998 * 60.00166 * 10 9 7 36 36 H 1.08998 * 109.46626 * 60.00110 * 13 11 10 37 37 H 1.08996 * 109.47240 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.46657 * 300.00302 * 13 11 10 39 39 H 1.09005 * 109.46957 * 295.00810 * 14 11 10 40 40 H 1.09006 * 109.46967 * 54.99895 * 14 11 10 41 41 H 0.97000 * 119.99804 * 180.02562 * 18 17 15 42 42 H 0.96700 * 117.00196 * 179.97438 * 25 23 7 43 43 H 1.08000 * 120.00284 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0065 6 6 3.5806 -1.1970 0.0012 7 6 4.3341 -2.5021 0.0023 8 1 3.6792 -3.2993 0.3540 9 7 5.4973 -2.3952 0.8929 10 6 5.9026 -3.7165 1.3907 11 6 7.1144 -3.5648 2.3121 12 1 7.9087 -3.0370 1.7842 13 6 6.7129 -2.7695 3.5561 14 6 7.6132 -4.9493 2.7311 15 6 8.8781 -4.8048 3.5375 16 1 9.2853 -3.8237 3.7321 17 6 9.5154 -5.9252 4.0267 18 7 9.0192 -7.1200 3.7901 19 14 11.0837 -5.7462 5.0257 20 1 11.4302 -4.3075 5.1495 21 1 10.8775 -6.3233 6.3784 22 1 12.1897 -6.4654 4.3440 23 6 4.7995 -2.8147 -1.3966 24 8 5.9792 -2.9358 -1.6279 25 8 3.9035 -2.9583 -2.3856 26 6 2.1981 -1.1970 0.0005 27 1 -0.3633 0.0004 1.0278 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 0.0010 32 1 5.3516 -0.0001 0.0114 33 1 5.3111 -1.7627 1.6567 34 1 5.0780 -4.1646 1.9450 35 1 6.1648 -4.3572 0.5487 36 1 5.9188 -3.2974 4.0840 37 1 7.5761 -2.6618 4.2128 38 1 6.3576 -1.7832 3.2576 39 1 6.8515 -5.4424 3.3351 40 1 7.8152 -5.5470 1.8422 41 1 9.4675 -7.9082 4.1347 42 1 4.2498 -3.1580 -3.2661 43 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594398011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:24 Heat of formation + Delta-G solvation = -104.290317 kcal Electronic energy + Delta-G solvation = -22922.204885 eV Core-core repulsion = 19544.526557 eV Total energy + Delta-G solvation = -3377.678328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59685 -40.15460 -38.44823 -37.02991 -36.01112 -34.36667 -33.27437 -32.01605 -29.12593 -28.12654 -27.67946 -26.60655 -24.47743 -23.29392 -22.77352 -21.29494 -20.67222 -19.05280 -18.57998 -17.82906 -17.48950 -16.89897 -16.65985 -16.39124 -16.14585 -15.68517 -15.27194 -15.06016 -14.66353 -14.45347 -14.19129 -14.05944 -14.00417 -13.73088 -13.36089 -13.24779 -12.94551 -12.85141 -12.76318 -12.63294 -12.50198 -12.24640 -12.15667 -11.90393 -11.87758 -11.64788 -11.51546 -11.08920 -10.97821 -10.54453 -9.77035 -9.58800 -9.52764 -8.17969 -6.26971 0.29680 0.47498 1.22879 1.39321 1.40122 1.53241 1.96608 2.41782 2.76095 3.15515 3.19344 3.48836 3.88196 4.03224 4.11584 4.16905 4.22831 4.28988 4.38583 4.45230 4.51949 4.58851 4.68699 4.77724 4.83243 4.90211 4.99405 5.01581 5.10741 5.21137 5.33615 5.34794 5.48207 5.50388 5.54746 5.57479 5.61088 5.68550 5.76282 5.86724 5.90512 6.09128 6.28942 6.32269 6.88738 7.03282 7.41176 8.94511 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023496 B = 0.003161 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.416771 B = 8855.842957 C = 9348.697831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.115 4.115 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.099 4.099 7 C 0.142 3.858 8 H 0.101 0.899 9 N -0.669 5.669 10 C 0.079 3.921 11 C -0.074 4.074 12 H 0.051 0.949 13 C -0.125 4.125 14 C 0.034 3.966 15 C -0.527 4.527 16 H 0.061 0.939 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.962 3.038 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.281 1.281 23 C 0.484 3.516 24 O -0.529 6.529 25 O -0.509 6.509 26 C -0.104 4.104 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.120 0.880 33 H 0.363 0.637 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.066 0.934 39 H -0.005 1.005 40 H -0.019 1.019 41 H 0.262 0.738 42 H 0.425 0.575 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.772 16.921 -9.271 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.100 4.100 7 C 0.031 3.969 8 H 0.118 0.882 9 N -0.305 5.305 10 C -0.050 4.050 11 C -0.092 4.092 12 H 0.070 0.930 13 C -0.183 4.183 14 C -0.004 4.004 15 C -0.565 4.565 16 H 0.079 0.921 17 C -0.201 4.201 18 N -0.577 5.577 19 Si 0.787 3.213 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.207 1.207 23 C 0.325 3.675 24 O -0.417 6.417 25 O -0.322 6.322 26 C -0.122 4.122 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.138 0.862 33 H 0.186 0.814 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.013 0.987 40 H -0.001 1.001 41 H 0.071 0.929 42 H 0.286 0.714 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.121 16.809 -9.428 27.149 hybrid contribution 0.882 -1.037 0.362 1.408 sum -18.239 15.772 -9.066 25.761 Atomic orbital electron populations 1.20839 0.89153 1.03766 1.03159 1.20208 0.97553 0.92569 0.98971 1.21427 0.94104 0.98579 0.99206 1.21386 0.94869 0.98062 0.99612 1.21154 1.00448 0.92306 0.99677 1.19359 0.93942 0.92277 1.04374 1.19808 0.91453 0.97678 0.87996 0.88165 1.59951 1.35099 1.12236 1.23229 1.21926 0.96910 0.89293 0.96861 1.20977 0.95750 0.97080 0.95438 0.93019 1.21647 1.00854 0.98835 0.96937 1.18993 0.94995 0.92190 0.94201 1.21655 1.09466 0.92878 1.32544 0.92073 1.25967 1.01261 0.95027 0.97803 1.70114 1.41660 0.98464 1.47443 0.85437 0.78986 0.78642 0.78228 1.18557 1.20284 1.20713 1.23565 0.83726 0.71945 0.88231 1.90740 1.20254 1.46813 1.83926 1.84465 1.42532 1.82750 1.22461 1.21079 0.92389 0.99133 0.99630 0.90338 0.90271 0.90914 0.83645 0.84127 0.86220 0.81359 0.94258 0.93412 0.93473 0.93435 0.91499 0.98673 1.00062 0.92939 0.71369 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 71.24 0.71 -0.38 16 2 C -0.09 -1.42 5.88 -19.87 -0.12 -1.53 16 3 C -0.12 -1.69 9.70 22.27 0.22 -1.48 16 4 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 5 C -0.12 -2.54 9.00 22.27 0.20 -2.34 16 6 C -0.10 -2.14 4.64 -19.86 -0.09 -2.24 16 7 C 0.14 3.61 2.73 43.43 0.12 3.73 16 8 H 0.10 2.29 7.66 -2.39 -0.02 2.27 16 9 N -0.67 -20.05 5.22 -499.37 -2.61 -22.66 16 10 C 0.08 2.86 4.84 86.30 0.42 3.28 16 11 C -0.07 -3.14 2.55 -10.79 -0.03 -3.16 16 12 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.13 -4.57 8.78 71.99 0.63 -3.94 16 14 C 0.03 1.84 4.45 29.85 0.13 1.97 16 15 C -0.53 -30.60 8.41 25.60 0.22 -30.38 16 16 H 0.06 3.42 7.05 -2.92 -0.02 3.40 16 17 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 18 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 19 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 C 0.48 13.71 7.49 71.24 0.53 14.24 16 24 O -0.53 -19.59 16.68 21.97 0.37 -19.22 16 25 O -0.51 -10.48 13.34 -51.35 -0.69 -11.17 16 26 C -0.10 -1.87 9.33 22.27 0.21 -1.66 16 27 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 29 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 30 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 31 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 32 H 0.12 2.88 7.71 -2.91 -0.02 2.86 16 33 H 0.36 9.67 6.23 -89.69 -0.56 9.11 16 34 H 0.04 1.33 8.06 -2.39 -0.02 1.31 16 35 H 0.05 1.95 7.62 -2.39 -0.02 1.94 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.88 6.95 -2.39 -0.02 1.87 16 38 H 0.07 1.96 6.68 -2.39 -0.02 1.94 16 39 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 40 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 41 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.42 5.30 9.10 -74.06 -0.67 4.63 16 43 H 0.14 2.05 8.04 -2.91 -0.02 2.02 16 Total: -1.00 -74.13 359.08 3.00 -71.13 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -0.22 Total: 17.98 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.84 Total: -25.50 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -2.32 Total: -80.70 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.32 Total: -30.39 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.13 3.00 -71.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594398011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.163 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds