Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38240 * 119.99797 * 2 1 4 4 C 1.38235 * 119.99890 * 180.34664 * 3 2 1 5 5 C 1.38237 * 119.99884 * 359.90696 * 4 3 2 6 6 C 1.50700 * 119.99699 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47062 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47418 * 59.97892 * 6 5 4 9 9 C 1.52998 * 109.47209 * 299.97564 * 6 5 4 10 10 N 1.46499 * 109.47163 * 182.84343 * 9 6 5 11 11 C 1.36944 * 120.00073 * 264.24893 * 10 9 6 12 12 H 1.07999 * 120.00184 * 142.88659 * 11 10 9 13 13 C 1.38817 * 119.99704 * 322.88317 * 11 10 9 14 14 N 1.31622 * 119.99735 * 339.27867 * 13 11 10 15 15 Si 1.86799 * 120.00009 * 159.28317 * 13 11 10 16 16 H 1.48502 * 109.46580 * 89.99860 * 15 13 11 17 17 H 1.48500 * 109.47059 * 209.99947 * 15 13 11 18 18 H 1.48498 * 109.47095 * 330.00075 * 15 13 11 19 19 C 1.46500 * 120.00344 * 84.24372 * 10 9 6 20 20 C 1.53007 * 109.46935 * 90.00067 * 19 10 9 21 21 C 1.50694 * 109.47175 * 180.02562 * 20 19 10 22 22 O 1.20827 * 119.99998 * 359.97438 * 21 20 19 23 23 O 1.34224 * 120.00301 * 180.02562 * 21 20 19 24 24 C 1.38238 * 120.00363 * 0.04895 * 5 4 3 25 25 C 1.38230 * 120.00261 * 180.27704 * 2 1 3 26 26 H 1.08995 * 109.47018 * 269.72550 * 1 2 3 27 27 H 1.09004 * 109.46984 * 29.72541 * 1 2 3 28 28 H 1.08999 * 109.46726 * 149.72097 * 1 2 3 29 29 H 1.07997 * 120.00012 * 0.27447 * 3 2 1 30 30 H 1.08002 * 120.00179 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47177 * 300.06126 * 8 6 5 32 32 H 1.09005 * 109.47300 * 60.05746 * 8 6 5 33 33 H 1.08998 * 109.47709 * 180.02562 * 8 6 5 34 34 H 1.09001 * 109.47049 * 302.84107 * 9 6 5 35 35 H 1.08999 * 109.46765 * 62.84292 * 9 6 5 36 36 H 0.97006 * 119.99603 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.47525 * 209.99939 * 19 10 9 38 38 H 1.09005 * 109.47116 * 330.00419 * 19 10 9 39 39 H 1.09004 * 109.46715 * 300.00522 * 20 19 10 40 40 H 1.08995 * 109.47109 * 60.00243 * 20 19 10 41 41 H 0.96698 * 117.00403 * 180.02562 * 23 21 20 42 42 H 1.07997 * 120.00034 * 180.02562 * 24 5 4 43 43 H 1.08008 * 119.99633 * 359.69947 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0072 5 6 4.2717 0.0001 -0.0125 6 6 5.7787 0.0002 -0.0199 7 1 6.1420 -1.0275 -0.0228 8 6 6.2947 0.7198 1.2277 9 6 6.2826 0.7229 -1.2707 10 7 7.7458 0.6640 -1.3126 11 6 8.4873 1.7079 -0.8269 12 1 9.4116 1.5157 -0.3024 13 6 8.0509 3.0130 -1.0088 14 7 7.1857 3.2909 -1.9610 15 14 8.6916 4.3749 0.0976 16 1 9.9162 4.9640 -0.5012 17 1 7.6537 5.4275 0.2386 18 1 9.0142 3.8156 1.4349 19 6 8.4158 -0.5117 -1.8739 20 6 8.6365 -0.3052 -3.3739 21 6 9.3252 -1.5147 -3.9515 22 8 9.6106 -2.4462 -3.2367 23 8 9.6224 -1.5570 -5.2597 24 6 3.5806 -1.1971 -0.0116 25 6 2.1982 -1.1971 -0.0058 26 1 -0.3633 -0.0049 1.0276 27 1 -0.3633 0.8925 -0.5096 28 1 -0.3633 -0.8875 -0.5182 29 1 1.6582 2.1325 0.0045 30 1 4.1205 2.1326 -0.0077 31 1 5.9305 1.7472 1.2314 32 1 5.9366 0.2043 2.1189 33 1 7.3847 0.7203 1.2223 34 1 5.8740 0.2404 -2.1585 35 1 5.9615 1.7642 -1.2427 36 1 6.8804 4.2029 -2.0879 37 1 9.3779 -0.6515 -1.3810 38 1 7.7950 -1.3936 -1.7161 39 1 7.6744 -0.1652 -3.8667 40 1 9.2573 0.5767 -3.5317 41 1 10.0637 -2.3538 -5.5842 42 1 4.1206 -2.1324 -0.0153 43 1 1.6582 -2.1324 -0.0054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600368395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -69.670939 kcal Electronic energy + Delta-G solvation = -23417.840464 eV Core-core repulsion = 20041.663345 eV Total energy + Delta-G solvation = -3376.177119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.78258 -39.22621 -36.62134 -35.73162 -33.99478 -32.02430 -31.02614 -30.51114 -29.21798 -26.28736 -25.77747 -24.63611 -22.52070 -22.11687 -21.13774 -20.05529 -18.98915 -17.72063 -16.77420 -16.05325 -15.71332 -15.54795 -15.02656 -14.73480 -14.61151 -13.79644 -13.65722 -13.60116 -13.10168 -13.08523 -12.78296 -12.72830 -12.43032 -12.10224 -11.85608 -11.60561 -11.31170 -11.27956 -11.14306 -11.08720 -10.88883 -10.69721 -10.43433 -10.33955 -10.22019 -10.10519 -9.94193 -9.85527 -9.54988 -8.54970 -8.53041 -8.06004 -6.66993 -5.87803 -3.43600 1.73646 1.78548 2.66225 3.30747 3.39864 3.42223 3.54534 4.14094 4.42981 5.07496 5.08967 5.21538 5.32390 5.37703 5.47027 5.61431 5.64503 5.74359 5.85849 5.86841 5.92435 5.95246 6.05382 6.11671 6.24727 6.27569 6.40706 6.43379 6.55530 6.69871 6.77489 6.78799 6.83297 6.90421 6.92077 6.92663 7.01321 7.17671 7.32926 7.43718 7.67545 7.75932 8.29658 8.44621 9.10967 9.72162 10.30614 11.13231 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.005437 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.814142 B = 5148.742912 C = 7016.098830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.108 4.108 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.058 4.058 6 C -0.076 4.076 7 H 0.059 0.941 8 C -0.123 4.123 9 C 0.159 3.841 10 N -0.576 5.576 11 C -0.260 4.260 12 H 0.062 0.938 13 C 0.018 3.982 14 N -0.884 5.884 15 Si 0.890 3.110 16 H -0.286 1.286 17 H -0.289 1.289 18 H -0.276 1.276 19 C 0.160 3.840 20 C -0.131 4.131 21 C 0.478 3.522 22 O -0.529 6.529 23 O -0.525 6.525 24 C -0.122 4.122 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.047 0.953 32 H 0.027 0.973 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.101 0.899 36 H 0.256 0.744 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.397 0.603 42 H 0.116 0.884 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 -6.450 0.351 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C -0.139 4.139 4 C -0.123 4.123 5 C -0.059 4.059 6 C -0.097 4.097 7 H 0.078 0.922 8 C -0.181 4.181 9 C 0.032 3.968 10 N -0.295 5.295 11 C -0.390 4.390 12 H 0.080 0.920 13 C -0.183 4.183 14 N -0.526 5.526 15 Si 0.719 3.281 16 H -0.212 1.212 17 H -0.215 1.215 18 H -0.201 1.201 19 C 0.033 3.967 20 C -0.172 4.172 21 C 0.322 3.678 22 O -0.418 6.418 23 O -0.336 6.336 24 C -0.140 4.140 25 C -0.142 4.142 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.143 0.857 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.254 0.746 42 H 0.134 0.866 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.496 -6.160 0.654 9.725 hybrid contribution 0.571 0.255 0.104 0.634 sum -6.926 -5.905 0.758 9.133 Atomic orbital electron populations 1.20718 0.91904 1.02219 1.01690 1.19777 0.95507 0.93403 1.02140 1.20984 0.94360 0.97074 1.01435 1.21118 0.93650 0.98463 0.99112 1.20169 0.96616 0.92606 0.96532 1.20904 0.88466 1.00485 0.99833 0.92245 1.21637 1.02854 0.99012 0.94553 1.20988 0.83133 1.01753 0.90900 1.43889 1.01097 1.16794 1.67733 1.19005 1.06428 0.84385 1.29183 0.92029 1.25142 0.99145 0.97445 0.96522 1.69999 1.34382 1.19092 1.29134 0.86504 0.78273 0.82001 0.81297 1.21244 1.21464 1.20124 1.20799 0.97415 0.90576 0.87948 1.22430 1.00954 0.93151 1.00622 1.24457 0.75123 0.89367 0.78881 1.90650 1.51578 1.38964 1.60599 1.84665 1.73467 1.47282 1.28175 1.21060 0.93879 0.97697 1.01398 1.20893 0.94205 0.97002 1.02070 0.91806 0.91940 0.92052 0.86713 0.85715 0.93418 0.95394 0.90498 0.96049 0.88163 0.93444 0.92860 0.93817 0.88688 0.87502 0.74566 0.86617 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.11 -1.49 5.88 -104.62 -0.62 -2.11 16 3 C -0.12 -1.81 9.70 -39.58 -0.38 -2.19 16 4 C -0.11 -1.81 8.74 -39.58 -0.35 -2.15 16 5 C -0.06 -1.02 4.78 -104.62 -0.50 -1.52 16 6 C -0.08 -1.44 2.78 -91.78 -0.26 -1.70 16 7 H 0.06 1.11 7.86 -51.93 -0.41 0.70 16 8 C -0.12 -2.37 8.57 37.15 0.32 -2.05 16 9 C 0.16 3.45 4.47 -4.04 -0.02 3.43 16 10 N -0.58 -13.09 2.16 -173.23 -0.37 -13.46 16 11 C -0.26 -6.47 7.82 -15.05 -0.12 -6.59 16 12 H 0.06 1.56 7.91 -52.49 -0.42 1.14 16 13 C 0.02 0.46 4.92 -17.43 -0.09 0.38 16 14 N -0.88 -23.43 11.48 55.49 0.64 -22.79 16 15 Si 0.89 20.35 29.60 -169.99 -5.03 15.31 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 19 C 0.16 3.26 4.98 -4.04 -0.02 3.24 16 20 C -0.13 -2.45 6.14 -27.88 -0.17 -2.62 16 21 C 0.48 8.17 8.33 36.00 0.30 8.47 16 22 O -0.53 -10.17 16.74 -18.75 -0.31 -10.48 16 23 O -0.52 -7.34 13.42 -39.24 -0.53 -7.87 16 24 C -0.12 -1.91 9.67 -39.58 -0.38 -2.29 16 25 C -0.12 -1.73 9.70 -39.59 -0.38 -2.12 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.12 2.26 7.13 -52.49 -0.37 1.89 16 31 H 0.05 0.95 7.39 -51.93 -0.38 0.56 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.61 6.62 -51.93 -0.34 1.27 16 34 H 0.02 0.47 8.11 -51.93 -0.42 0.04 16 35 H 0.10 2.44 4.89 -51.93 -0.25 2.19 16 36 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.05 1.12 8.00 -51.93 -0.42 0.70 16 38 H 0.04 0.86 8.01 -51.93 -0.42 0.45 16 39 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 40 H 0.11 2.13 8.14 -51.93 -0.42 1.71 16 41 H 0.40 3.60 9.10 45.56 0.41 4.01 16 42 H 0.12 1.64 7.95 -52.49 -0.42 1.23 16 43 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -28.30 357.35 -8.47 -36.77 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.94 Total: 7.73 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.30 Total: -10.60 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.26 Total: -36.25 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.84 Total: -18.35 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.30 -8.47 -36.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600368395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.897 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds