Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38240 * 119.99797 * 2 1 4 4 C 1.38235 * 119.99890 * 180.34664 * 3 2 1 5 5 C 1.38237 * 119.99884 * 359.90696 * 4 3 2 6 6 C 1.50700 * 119.99699 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47062 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47418 * 59.97892 * 6 5 4 9 9 C 1.52998 * 109.47209 * 299.97564 * 6 5 4 10 10 N 1.46499 * 109.47163 * 182.84343 * 9 6 5 11 11 C 1.36944 * 120.00073 * 264.24893 * 10 9 6 12 12 H 1.07999 * 120.00184 * 142.88659 * 11 10 9 13 13 C 1.38817 * 119.99704 * 322.88317 * 11 10 9 14 14 N 1.31622 * 119.99735 * 339.27867 * 13 11 10 15 15 Si 1.86799 * 120.00009 * 159.28317 * 13 11 10 16 16 H 1.48502 * 109.46580 * 89.99860 * 15 13 11 17 17 H 1.48500 * 109.47059 * 209.99947 * 15 13 11 18 18 H 1.48498 * 109.47095 * 330.00075 * 15 13 11 19 19 C 1.46500 * 120.00344 * 84.24372 * 10 9 6 20 20 C 1.53007 * 109.46935 * 90.00067 * 19 10 9 21 21 C 1.50694 * 109.47175 * 180.02562 * 20 19 10 22 22 O 1.20827 * 119.99998 * 359.97438 * 21 20 19 23 23 O 1.34224 * 120.00301 * 180.02562 * 21 20 19 24 24 C 1.38238 * 120.00363 * 0.04895 * 5 4 3 25 25 C 1.38230 * 120.00261 * 180.27704 * 2 1 3 26 26 H 1.08995 * 109.47018 * 269.72550 * 1 2 3 27 27 H 1.09004 * 109.46984 * 29.72541 * 1 2 3 28 28 H 1.08999 * 109.46726 * 149.72097 * 1 2 3 29 29 H 1.07997 * 120.00012 * 0.27447 * 3 2 1 30 30 H 1.08002 * 120.00179 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47177 * 300.06126 * 8 6 5 32 32 H 1.09005 * 109.47300 * 60.05746 * 8 6 5 33 33 H 1.08998 * 109.47709 * 180.02562 * 8 6 5 34 34 H 1.09001 * 109.47049 * 302.84107 * 9 6 5 35 35 H 1.08999 * 109.46765 * 62.84292 * 9 6 5 36 36 H 0.97006 * 119.99603 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.47525 * 209.99939 * 19 10 9 38 38 H 1.09005 * 109.47116 * 330.00419 * 19 10 9 39 39 H 1.09004 * 109.46715 * 300.00522 * 20 19 10 40 40 H 1.08995 * 109.47109 * 60.00243 * 20 19 10 41 41 H 0.96698 * 117.00403 * 180.02562 * 23 21 20 42 42 H 1.07997 * 120.00034 * 180.02562 * 24 5 4 43 43 H 1.08008 * 119.99633 * 359.69947 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0072 5 6 4.2717 0.0001 -0.0125 6 6 5.7787 0.0002 -0.0199 7 1 6.1420 -1.0275 -0.0228 8 6 6.2947 0.7198 1.2277 9 6 6.2826 0.7229 -1.2707 10 7 7.7458 0.6640 -1.3126 11 6 8.4873 1.7079 -0.8269 12 1 9.4116 1.5157 -0.3024 13 6 8.0509 3.0130 -1.0088 14 7 7.1857 3.2909 -1.9610 15 14 8.6916 4.3749 0.0976 16 1 9.9162 4.9640 -0.5012 17 1 7.6537 5.4275 0.2386 18 1 9.0142 3.8156 1.4349 19 6 8.4158 -0.5117 -1.8739 20 6 8.6365 -0.3052 -3.3739 21 6 9.3252 -1.5147 -3.9515 22 8 9.6106 -2.4462 -3.2367 23 8 9.6224 -1.5570 -5.2597 24 6 3.5806 -1.1971 -0.0116 25 6 2.1982 -1.1971 -0.0058 26 1 -0.3633 -0.0049 1.0276 27 1 -0.3633 0.8925 -0.5096 28 1 -0.3633 -0.8875 -0.5182 29 1 1.6582 2.1325 0.0045 30 1 4.1205 2.1326 -0.0077 31 1 5.9305 1.7472 1.2314 32 1 5.9366 0.2043 2.1189 33 1 7.3847 0.7203 1.2223 34 1 5.8740 0.2404 -2.1585 35 1 5.9615 1.7642 -1.2427 36 1 6.8804 4.2029 -2.0879 37 1 9.3779 -0.6515 -1.3810 38 1 7.7950 -1.3936 -1.7161 39 1 7.6744 -0.1652 -3.8667 40 1 9.2573 0.5767 -3.5317 41 1 10.0637 -2.3538 -5.5842 42 1 4.1206 -2.1324 -0.0153 43 1 1.6582 -2.1324 -0.0054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600368395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -83.322347 kcal Electronic energy + Delta-G solvation = -23418.432434 eV Core-core repulsion = 20041.663345 eV Total energy + Delta-G solvation = -3376.769089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16460 -40.46688 -38.23614 -37.04980 -35.42630 -33.85658 -32.32419 -31.71024 -30.82758 -27.79968 -27.19667 -26.31326 -23.86506 -23.52326 -22.49393 -21.51842 -20.50136 -19.10695 -18.54385 -17.46145 -17.11179 -16.97805 -16.53200 -16.26317 -15.86304 -15.46371 -15.18918 -14.78232 -14.48996 -14.37578 -14.13930 -14.07156 -13.99578 -13.30341 -13.16657 -13.07465 -12.92918 -12.72131 -12.61357 -12.55894 -12.48975 -12.22698 -12.13407 -11.91116 -11.76736 -11.63425 -11.54283 -11.41693 -11.21919 -10.46182 -9.73503 -9.28465 -8.54348 -7.80991 -5.39696 0.54259 0.59104 1.26839 1.45706 1.50985 1.57928 2.22987 2.54555 2.93893 3.29757 3.69107 3.97644 4.08592 4.19438 4.23469 4.24586 4.28100 4.33970 4.60747 4.61187 4.66678 4.70042 4.75562 4.83939 4.89875 4.92592 5.04777 5.07806 5.17690 5.19952 5.26578 5.29916 5.33388 5.42141 5.54781 5.65696 5.70135 5.72450 5.77952 5.84202 5.99038 6.24577 6.50512 7.07764 7.19976 7.85664 8.40352 9.16673 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.005437 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.814142 B = 5148.742912 C = 7016.098830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C -0.128 4.128 4 C -0.123 4.123 5 C -0.081 4.081 6 C -0.064 4.064 7 H 0.062 0.938 8 C -0.114 4.114 9 C 0.167 3.833 10 N -0.588 5.588 11 C -0.258 4.258 12 H 0.055 0.945 13 C -0.019 4.019 14 N -0.909 5.909 15 Si 0.939 3.061 16 H -0.286 1.286 17 H -0.293 1.293 18 H -0.273 1.273 19 C 0.163 3.837 20 C -0.123 4.123 21 C 0.494 3.506 22 O -0.550 6.550 23 O -0.515 6.515 24 C -0.127 4.127 25 C -0.123 4.123 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.013 0.987 35 H 0.074 0.926 36 H 0.251 0.749 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.424 0.576 42 H 0.128 0.872 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 -7.957 0.349 11.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.081 4.081 6 C -0.085 4.085 7 H 0.081 0.919 8 C -0.171 4.171 9 C 0.041 3.959 10 N -0.307 5.307 11 C -0.388 4.388 12 H 0.072 0.928 13 C -0.218 4.218 14 N -0.552 5.552 15 Si 0.768 3.232 16 H -0.213 1.213 17 H -0.219 1.219 18 H -0.198 1.198 19 C 0.036 3.964 20 C -0.163 4.163 21 C 0.338 3.662 22 O -0.441 6.441 23 O -0.329 6.329 24 C -0.145 4.145 25 C -0.140 4.140 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.149 0.851 30 H 0.120 0.880 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.285 0.715 42 H 0.146 0.854 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.910 -7.693 0.632 11.789 hybrid contribution 0.981 0.644 0.044 1.174 sum -7.930 -7.049 0.675 10.631 Atomic orbital electron populations 1.20787 0.89092 1.03495 1.02991 1.20224 0.97561 0.92682 0.99958 1.21211 0.93499 0.98682 1.01239 1.21045 0.94828 0.97560 1.00722 1.20035 0.95473 0.93654 0.98971 1.20659 0.90037 0.99814 0.97983 0.91941 1.21513 1.01317 0.98517 0.95775 1.20817 0.82638 1.00456 0.92010 1.43995 1.01456 1.16845 1.68452 1.19081 1.06143 0.85079 1.28541 0.92768 1.25609 0.99761 0.98897 0.97489 1.70102 1.35721 1.18967 1.30441 0.85735 0.77462 0.79934 0.80109 1.21259 1.21934 1.19802 1.20726 0.96872 0.89844 0.88948 1.22080 1.00970 0.93621 0.99652 1.23777 0.74597 0.88168 0.79678 1.90654 1.52519 1.39504 1.61439 1.84570 1.73265 1.48925 1.26090 1.21249 0.94917 0.97306 1.01032 1.21266 0.93624 0.98466 1.00691 0.90346 0.91136 0.90403 0.85141 0.88040 0.94913 0.93456 0.92556 0.96848 0.90795 0.93962 0.93631 0.93119 0.88836 0.88907 0.71513 0.85361 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.01 71.24 0.71 -1.12 16 2 C -0.10 -2.60 5.88 -19.87 -0.12 -2.72 16 3 C -0.13 -3.73 9.70 22.27 0.22 -3.51 16 4 C -0.12 -4.32 8.74 22.27 0.19 -4.12 16 5 C -0.08 -2.81 4.78 -19.86 -0.09 -2.91 16 6 C -0.06 -2.48 2.78 -11.54 -0.03 -2.52 16 7 H 0.06 2.34 7.86 -2.39 -0.02 2.32 16 8 C -0.11 -4.49 8.57 71.98 0.62 -3.87 16 9 C 0.17 7.50 4.47 86.38 0.39 7.89 16 10 N -0.59 -27.41 2.16 -701.98 -1.52 -28.93 16 11 C -0.26 -13.18 7.82 84.03 0.66 -12.52 16 12 H 0.05 2.81 7.91 -2.91 -0.02 2.79 16 13 C -0.02 -1.00 4.92 84.86 0.42 -0.59 16 14 N -0.91 -49.72 11.48 21.65 0.25 -49.47 16 15 Si 0.94 42.76 29.60 68.60 2.03 44.79 16 16 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C 0.16 6.72 4.98 86.38 0.43 7.15 16 20 C -0.12 -4.59 6.14 29.85 0.18 -4.41 16 21 C 0.49 16.25 8.33 71.23 0.59 16.84 16 22 O -0.55 -20.46 16.74 21.96 0.37 -20.10 16 23 O -0.52 -13.23 13.42 -51.36 -0.69 -13.92 16 24 C -0.13 -3.76 9.67 22.27 0.22 -3.54 16 25 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.12 8.08 -2.38 -0.02 1.10 16 28 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 29 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.10 3.94 7.13 -2.91 -0.02 3.92 16 31 H 0.03 1.35 7.39 -2.39 -0.02 1.33 16 32 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.06 2.41 6.62 -2.39 -0.02 2.40 16 34 H 0.01 0.60 8.11 -2.39 -0.02 0.58 16 35 H 0.07 3.78 4.89 -2.39 -0.01 3.77 16 36 H 0.25 13.46 8.31 -92.70 -0.77 12.69 16 37 H 0.05 1.93 8.00 -2.39 -0.02 1.91 16 38 H 0.05 2.00 8.01 -2.38 -0.02 1.98 16 39 H 0.09 3.53 8.14 -2.38 -0.02 3.51 16 40 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 41 H 0.42 6.39 9.10 -74.06 -0.67 5.72 16 42 H 0.13 3.39 7.95 -2.91 -0.02 3.37 16 43 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -61.37 357.35 5.36 -56.01 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.32 Total: 24.44 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.60 Total: -12.82 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -1.27 Total: -78.40 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.32 Total: -34.01 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -61.37 5.36 -56.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600368395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.312 kcal (2) G-P(sol) polarization free energy of solvation -61.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds