Wall clock time and date at job start Tue Mar 31 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37964 * 119.92553 * 2 1 4 4 C 1.39611 * 119.84784 * 180.29517 * 3 2 1 5 5 C 1.47726 * 120.14735 * 179.74985 * 4 3 2 6 6 O 1.21472 * 120.00175 * 359.97438 * 5 4 3 7 7 O 1.34712 * 119.99858 * 179.97438 * 5 4 3 8 8 C 1.39648 * 119.70037 * 359.72712 * 4 3 2 9 9 C 1.37923 * 119.84672 * 359.97438 * 8 4 3 10 10 C 1.38352 * 119.92512 * 179.74947 * 2 1 3 11 11 C 1.50695 * 119.84706 * 359.97438 * 10 2 1 12 12 H 1.08994 * 109.47229 * 324.72494 * 11 10 2 13 13 C 1.52993 * 109.47261 * 84.72932 * 11 10 2 14 14 N 1.46904 * 109.46760 * 204.73023 * 11 10 2 15 15 C 1.46899 * 111.00029 * 155.00092 * 14 11 10 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 11 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47592 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00057 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00356 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99989 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00117 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46744 * 90.00434 * 22 20 18 24 24 H 1.48500 * 109.47304 * 210.00023 * 22 20 18 25 25 H 1.48498 * 109.47341 * 330.00626 * 22 20 18 26 26 H 1.08999 * 109.46912 * 270.24883 * 1 2 3 27 27 H 1.08995 * 109.47381 * 30.25470 * 1 2 3 28 28 H 1.09008 * 109.47090 * 150.25382 * 1 2 3 29 29 H 1.08003 * 120.07326 * 359.97438 * 3 2 1 30 30 H 0.96695 * 116.99987 * 180.02562 * 7 5 4 31 31 H 1.07997 * 120.07150 * 180.02562 * 8 4 3 32 32 H 1.08005 * 119.92159 * 180.02562 * 9 8 4 33 33 H 1.08999 * 109.47404 * 299.99809 * 13 11 10 34 34 H 1.09004 * 109.47538 * 59.99756 * 13 11 10 35 35 H 1.09001 * 109.46997 * 179.97438 * 13 11 10 36 36 H 1.00902 * 111.00190 * 31.03792 * 14 11 10 37 37 H 1.09002 * 109.47043 * 299.99792 * 15 14 11 38 38 H 1.09001 * 109.47354 * 59.99854 * 15 14 11 39 39 H 1.09002 * 109.47153 * 300.00004 * 16 15 14 40 40 H 1.08998 * 109.47533 * 59.99633 * 16 15 14 41 41 H 1.09002 * 109.47103 * 300.00247 * 17 16 15 42 42 H 1.09001 * 109.47066 * 60.00169 * 17 16 15 43 43 H 0.96996 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1957 0.0000 4 6 3.5914 1.1938 -0.0062 5 6 4.3350 2.4703 -0.0119 6 8 3.7318 3.5246 -0.0115 7 8 5.6821 2.4649 -0.0173 8 6 4.2816 -0.0201 -0.0067 9 6 3.5810 -1.2081 -0.0004 10 6 2.1972 -1.1991 0.0052 11 6 1.4385 -2.5011 0.0115 12 1 0.5310 -2.3899 0.6048 13 6 1.0667 -2.8816 -1.4229 14 7 2.2792 -3.5548 0.5955 15 6 1.4561 -4.6318 1.1615 16 6 2.3648 -5.7083 1.7583 17 6 1.5076 -6.8297 2.3484 18 6 2.4027 -7.8904 2.9357 19 1 3.4758 -7.7759 2.8927 20 6 1.8518 -9.0065 3.5287 21 7 0.5450 -9.1458 3.5815 22 14 2.9613 -10.3216 4.2560 23 1 3.2352 -10.0054 5.6809 24 1 2.2901 -11.6429 4.1624 25 1 4.2407 -10.3617 3.5031 26 1 -0.3633 0.0045 1.0277 27 1 -0.3634 0.8876 -0.5178 28 1 -0.3634 -0.8923 -0.5099 29 1 1.6552 2.1310 -0.0004 30 1 6.1245 3.3248 -0.0205 31 1 5.3616 -0.0286 -0.0111 32 1 4.1136 -2.1477 -0.0003 33 1 0.4429 -2.0998 -1.8562 34 1 1.9743 -2.9928 -2.0163 35 1 0.5184 -3.8237 -1.4184 36 1 2.9051 -3.1748 1.2898 37 1 0.8127 -4.2255 1.9419 38 1 0.8413 -5.0706 0.3756 39 1 3.0080 -6.1146 0.9776 40 1 2.9800 -5.2699 2.5441 41 1 0.8648 -6.4232 3.1292 42 1 0.8922 -7.2684 1.5629 43 1 0.1575 -9.9312 3.9984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607595031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:36 Heat of formation + Delta-G solvation = -89.648725 kcal Electronic energy + Delta-G solvation = -22215.629679 eV Core-core repulsion = 18838.586258 eV Total energy + Delta-G solvation = -3377.043421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82037 -39.66456 -36.86174 -36.37952 -34.20261 -33.24252 -32.17060 -30.57541 -29.21355 -27.37208 -26.11294 -25.11915 -22.80073 -22.35038 -21.42194 -20.40768 -19.96365 -18.26428 -17.52368 -16.45993 -16.26058 -15.95627 -15.91602 -15.06383 -14.61675 -14.50846 -14.26552 -14.09856 -13.80296 -13.45506 -13.36526 -12.92772 -12.56673 -12.47120 -12.31373 -12.12929 -11.87922 -11.84710 -11.62591 -11.50232 -11.24901 -11.05843 -10.87011 -10.71564 -10.56776 -10.49213 -9.71228 -9.36510 -9.17092 -9.06742 -8.94827 -8.34700 -8.28203 -5.99773 -4.01829 0.37981 1.07505 2.22484 2.67678 3.32165 3.38398 3.42057 3.44973 4.17740 4.40471 4.47490 4.52882 4.63664 4.78476 4.91519 5.03276 5.20132 5.28054 5.36153 5.37511 5.40303 5.47579 5.65807 5.69135 5.74861 5.81994 5.85892 5.93096 5.98651 6.06692 6.13983 6.19631 6.27622 6.33389 6.58111 6.69265 6.75249 7.12002 7.27216 7.53401 7.54782 7.68090 7.82749 8.00556 8.43704 9.05395 9.62234 11.11682 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.002528 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.385855 B =11074.810853 C =11810.813043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.094 4.094 3 C -0.055 4.055 4 C -0.135 4.135 5 C 0.529 3.471 6 O -0.519 6.519 7 O -0.512 6.512 8 C -0.064 4.064 9 C -0.117 4.117 10 C -0.044 4.044 11 C 0.115 3.885 12 H 0.058 0.942 13 C -0.136 4.136 14 N -0.686 5.686 15 C 0.059 3.941 16 C -0.107 4.107 17 C 0.022 3.978 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.414 0.586 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.340 0.660 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 22.491 -9.518 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.094 4.094 3 C -0.073 4.073 4 C -0.136 4.136 5 C 0.374 3.626 6 O -0.409 6.409 7 O -0.323 6.323 8 C -0.082 4.082 9 C -0.136 4.136 10 C -0.044 4.044 11 C 0.005 3.995 12 H 0.076 0.924 13 C -0.193 4.193 14 N -0.318 5.318 15 C -0.070 4.070 16 C -0.145 4.145 17 C -0.015 4.015 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.154 0.846 30 H 0.272 0.728 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.159 0.841 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.764 21.940 -10.060 24.428 hybrid contribution 0.543 0.273 1.295 1.431 sum 4.307 22.213 -8.764 24.265 Atomic orbital electron populations 1.20912 0.90439 1.03452 1.02930 1.19689 0.96593 0.91842 1.01284 1.21063 0.91986 0.98442 0.95789 1.18986 0.93247 0.90583 1.10816 1.20963 0.80352 0.89483 0.71770 1.90881 1.69754 1.33560 1.46659 1.84570 1.21045 1.40922 1.85787 1.21472 1.00643 0.91022 0.95105 1.21189 0.93563 0.98819 0.99979 1.20277 0.94137 0.94515 0.95514 1.20549 0.94418 0.87144 0.97382 0.92385 1.21786 1.01805 1.01315 0.94435 1.60739 1.20866 1.11015 1.39159 1.22194 0.95616 0.91917 0.97234 1.21618 0.98267 0.95668 0.98908 1.19060 0.94907 0.91944 0.95634 1.21253 0.93118 1.04403 1.36921 0.92674 1.25033 0.94977 0.98286 0.96251 1.69966 1.09922 1.28917 1.44813 0.86596 0.80774 0.81160 0.79490 1.20711 1.21239 1.19848 0.90762 0.91195 0.90573 0.84631 0.72788 0.84410 0.83622 0.92582 0.91725 0.91727 0.84122 0.95629 0.91273 0.92480 0.93668 0.96845 0.96577 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.20 36.01 0.33 -0.63 16 2 C -0.09 -0.92 5.87 -104.68 -0.61 -1.53 16 3 C -0.05 -0.55 9.25 -39.17 -0.36 -0.92 16 4 C -0.14 -1.40 5.87 -104.98 -0.62 -2.01 16 5 C 0.53 5.43 8.27 34.61 0.29 5.72 16 6 O -0.52 -6.63 17.13 -19.24 -0.33 -6.96 16 7 O -0.51 -3.72 12.68 -40.52 -0.51 -4.24 16 8 C -0.06 -0.61 9.62 -39.17 -0.38 -0.99 16 9 C -0.12 -1.19 8.84 -39.64 -0.35 -1.54 16 10 C -0.04 -0.46 4.94 -104.53 -0.52 -0.98 16 11 C 0.11 1.30 2.13 -68.87 -0.15 1.15 16 12 H 0.06 0.67 6.65 -51.93 -0.35 0.32 16 13 C -0.14 -1.44 9.20 37.15 0.34 -1.10 16 14 N -0.69 -9.16 5.56 -107.96 -0.60 -9.76 16 15 C 0.06 0.96 5.48 -3.83 -0.02 0.94 16 16 C -0.11 -2.14 5.41 -26.74 -0.14 -2.29 16 17 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 18 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 19 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 22 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.08 0.59 5.38 -51.92 -0.28 0.31 16 29 H 0.14 1.29 7.65 -52.48 -0.40 0.89 16 30 H 0.41 1.14 9.11 45.56 0.42 1.56 16 31 H 0.14 1.10 7.61 -52.49 -0.40 0.70 16 32 H 0.15 1.44 6.95 -52.48 -0.36 1.08 16 33 H 0.06 0.50 6.87 -51.93 -0.36 0.15 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 36 H 0.34 4.34 7.25 -39.29 -0.29 4.06 16 37 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 38 H 0.07 1.15 7.44 -51.93 -0.39 0.76 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -32.59 356.54 -8.80 -41.39 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.71 Total: 1.03 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.74 Total: -17.26 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.14 Total: -35.99 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.84 Total: -11.19 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.59 -8.80 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607595031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.256 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds