Wall clock time and date at job start Tue Mar 31 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37964 * 119.92553 * 2 1 4 4 C 1.39611 * 119.84784 * 180.29517 * 3 2 1 5 5 C 1.47726 * 120.14735 * 179.74985 * 4 3 2 6 6 O 1.21472 * 120.00175 * 359.97438 * 5 4 3 7 7 O 1.34712 * 119.99858 * 179.97438 * 5 4 3 8 8 C 1.39648 * 119.70037 * 359.72712 * 4 3 2 9 9 C 1.37923 * 119.84672 * 359.97438 * 8 4 3 10 10 C 1.38352 * 119.92512 * 179.74947 * 2 1 3 11 11 C 1.50695 * 119.84706 * 359.97438 * 10 2 1 12 12 H 1.08994 * 109.47229 * 324.72494 * 11 10 2 13 13 C 1.52993 * 109.47261 * 84.72932 * 11 10 2 14 14 N 1.46904 * 109.46760 * 204.73023 * 11 10 2 15 15 C 1.46899 * 111.00029 * 155.00092 * 14 11 10 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 11 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47592 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00057 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00356 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99989 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00117 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46744 * 90.00434 * 22 20 18 24 24 H 1.48500 * 109.47304 * 210.00023 * 22 20 18 25 25 H 1.48498 * 109.47341 * 330.00626 * 22 20 18 26 26 H 1.08999 * 109.46912 * 270.24883 * 1 2 3 27 27 H 1.08995 * 109.47381 * 30.25470 * 1 2 3 28 28 H 1.09008 * 109.47090 * 150.25382 * 1 2 3 29 29 H 1.08003 * 120.07326 * 359.97438 * 3 2 1 30 30 H 0.96695 * 116.99987 * 180.02562 * 7 5 4 31 31 H 1.07997 * 120.07150 * 180.02562 * 8 4 3 32 32 H 1.08005 * 119.92159 * 180.02562 * 9 8 4 33 33 H 1.08999 * 109.47404 * 299.99809 * 13 11 10 34 34 H 1.09004 * 109.47538 * 59.99756 * 13 11 10 35 35 H 1.09001 * 109.46997 * 179.97438 * 13 11 10 36 36 H 1.00902 * 111.00190 * 31.03792 * 14 11 10 37 37 H 1.09002 * 109.47043 * 299.99792 * 15 14 11 38 38 H 1.09001 * 109.47354 * 59.99854 * 15 14 11 39 39 H 1.09002 * 109.47153 * 300.00004 * 16 15 14 40 40 H 1.08998 * 109.47533 * 59.99633 * 16 15 14 41 41 H 1.09002 * 109.47103 * 300.00247 * 17 16 15 42 42 H 1.09001 * 109.47066 * 60.00169 * 17 16 15 43 43 H 0.96996 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1957 0.0000 4 6 3.5914 1.1938 -0.0062 5 6 4.3350 2.4703 -0.0119 6 8 3.7318 3.5246 -0.0115 7 8 5.6821 2.4649 -0.0173 8 6 4.2816 -0.0201 -0.0067 9 6 3.5810 -1.2081 -0.0004 10 6 2.1972 -1.1991 0.0052 11 6 1.4385 -2.5011 0.0115 12 1 0.5310 -2.3899 0.6048 13 6 1.0667 -2.8816 -1.4229 14 7 2.2792 -3.5548 0.5955 15 6 1.4561 -4.6318 1.1615 16 6 2.3648 -5.7083 1.7583 17 6 1.5076 -6.8297 2.3484 18 6 2.4027 -7.8904 2.9357 19 1 3.4758 -7.7759 2.8927 20 6 1.8518 -9.0065 3.5287 21 7 0.5450 -9.1458 3.5815 22 14 2.9613 -10.3216 4.2560 23 1 3.2352 -10.0054 5.6809 24 1 2.2901 -11.6429 4.1624 25 1 4.2407 -10.3617 3.5031 26 1 -0.3633 0.0045 1.0277 27 1 -0.3634 0.8876 -0.5178 28 1 -0.3634 -0.8923 -0.5099 29 1 1.6552 2.1310 -0.0004 30 1 6.1245 3.3248 -0.0205 31 1 5.3616 -0.0286 -0.0111 32 1 4.1136 -2.1477 -0.0003 33 1 0.4429 -2.0998 -1.8562 34 1 1.9743 -2.9928 -2.0163 35 1 0.5184 -3.8237 -1.4184 36 1 2.9051 -3.1748 1.2898 37 1 0.8127 -4.2255 1.9419 38 1 0.8413 -5.0706 0.3756 39 1 3.0080 -6.1146 0.9776 40 1 2.9800 -5.2699 2.5441 41 1 0.8648 -6.4232 3.1292 42 1 0.8922 -7.2684 1.5629 43 1 0.1575 -9.9312 3.9984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607595031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:35 Heat of formation + Delta-G solvation = -109.656466 kcal Electronic energy + Delta-G solvation = -22216.497280 eV Core-core repulsion = 18838.586258 eV Total energy + Delta-G solvation = -3377.911022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.58544 -40.46053 -37.94756 -37.12604 -35.83699 -34.37642 -33.56359 -31.78681 -30.35527 -28.15317 -27.67904 -26.07879 -24.40452 -23.14207 -22.37354 -21.87580 -20.99629 -19.00059 -18.49305 -18.25257 -17.30839 -16.91000 -16.70479 -16.52140 -16.13989 -15.49994 -15.15327 -15.11774 -14.86068 -14.41821 -14.34366 -14.14461 -13.73021 -13.61430 -13.40538 -13.19268 -13.13040 -12.90795 -12.69477 -12.56751 -12.54767 -12.43848 -12.21619 -12.05233 -11.93587 -11.63029 -11.45260 -11.33973 -11.07058 -10.53848 -9.95628 -9.72450 -9.39085 -8.19007 -6.29627 -0.40292 0.32648 1.41095 1.42242 1.44761 1.53552 2.03137 2.41977 2.68327 3.13144 3.14326 3.56749 3.78068 3.90663 4.09323 4.19833 4.23226 4.28994 4.31026 4.40899 4.53821 4.68605 4.72481 4.75170 4.78064 4.88781 4.93539 4.98468 5.01753 5.14487 5.21145 5.23481 5.26961 5.32930 5.40748 5.48569 5.54108 5.56190 5.77957 5.82894 5.88236 6.08191 6.28835 6.45423 6.87746 6.92601 7.39603 8.92867 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.002528 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.385855 B =11074.810853 C =11810.813043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.094 4.094 3 C -0.061 4.061 4 C -0.146 4.146 5 C 0.535 3.465 6 O -0.550 6.550 7 O -0.503 6.503 8 C -0.060 4.060 9 C -0.122 4.122 10 C -0.052 4.052 11 C 0.118 3.882 12 H 0.060 0.940 13 C -0.133 4.133 14 N -0.682 5.682 15 C 0.073 3.927 16 C -0.092 4.092 17 C 0.025 3.975 18 C -0.542 4.542 19 H 0.060 0.940 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.263 1.263 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.433 0.567 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.345 0.655 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.049 0.951 41 H -0.010 1.010 42 H -0.008 1.008 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 23.041 -9.691 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 C -0.079 4.079 4 C -0.147 4.147 5 C 0.381 3.619 6 O -0.442 6.442 7 O -0.317 6.317 8 C -0.078 4.078 9 C -0.140 4.140 10 C -0.052 4.052 11 C 0.009 3.991 12 H 0.077 0.923 13 C -0.191 4.191 14 N -0.315 5.315 15 C -0.056 4.056 16 C -0.130 4.130 17 C -0.013 4.013 18 C -0.580 4.580 19 H 0.078 0.922 20 C -0.200 4.200 21 N -0.574 5.574 22 Si 0.789 3.211 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.187 1.187 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.157 0.843 30 H 0.296 0.704 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.164 0.836 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.008 0.992 42 H 0.010 0.990 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.082 22.513 -10.241 25.250 hybrid contribution 0.172 0.151 1.331 1.350 sum 5.254 22.664 -8.910 24.913 Atomic orbital electron populations 1.20965 0.89223 1.04241 1.03387 1.19844 0.97530 0.91404 1.00648 1.21181 0.92191 0.98698 0.95878 1.19162 0.93569 0.91020 1.10990 1.20940 0.81055 0.88935 0.70984 1.90870 1.70544 1.34494 1.48327 1.84525 1.19593 1.42621 1.84979 1.21598 1.01399 0.90443 0.94408 1.21255 0.93511 0.99150 1.00077 1.20232 0.94346 0.94218 0.96445 1.20543 0.94192 0.86899 0.97515 0.92263 1.21772 1.01807 1.01499 0.94015 1.60654 1.20722 1.11256 1.38868 1.21873 0.94903 0.91902 0.96928 1.21360 0.97823 0.95012 0.98785 1.18968 0.94783 0.93232 0.94282 1.21713 0.93727 1.05379 1.37153 0.92222 1.25986 0.96497 1.00836 0.96638 1.70095 1.11854 1.29817 1.45683 0.85459 0.78913 0.77899 0.78859 1.19792 1.20781 1.18729 0.90427 0.89887 0.90334 0.84346 0.70447 0.82869 0.83459 0.90771 0.92129 0.92661 0.83559 0.95867 0.91633 0.92703 0.93175 0.99171 0.98984 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.20 71.24 0.66 -1.08 16 2 C -0.09 -1.71 5.87 -19.90 -0.12 -1.83 16 3 C -0.06 -1.17 9.25 22.54 0.21 -0.96 16 4 C -0.15 -2.83 5.87 -20.10 -0.12 -2.95 16 5 C 0.53 10.28 8.27 70.33 0.58 10.86 16 6 O -0.55 -13.63 17.13 19.93 0.34 -13.29 16 7 O -0.50 -6.33 12.68 -56.22 -0.71 -7.04 16 8 C -0.06 -1.05 9.62 22.54 0.22 -0.84 16 9 C -0.12 -2.29 8.84 22.23 0.20 -2.09 16 10 C -0.05 -1.02 4.94 -19.80 -0.10 -1.12 16 11 C 0.12 2.52 2.13 44.16 0.09 2.61 16 12 H 0.06 1.28 6.65 -2.39 -0.02 1.27 16 13 C -0.13 -2.66 9.20 71.98 0.66 -2.00 16 14 N -0.68 -17.49 5.56 -495.47 -2.75 -20.24 16 15 C 0.07 2.36 5.48 86.30 0.47 2.83 16 16 C -0.09 -3.68 5.41 30.59 0.17 -3.52 16 17 C 0.02 1.31 4.97 29.84 0.15 1.46 16 18 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 20 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 21 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 22 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 28 H 0.08 1.08 5.38 -2.38 -0.01 1.06 16 29 H 0.14 2.52 7.65 -2.91 -0.02 2.50 16 30 H 0.43 1.48 9.11 -74.06 -0.67 0.81 16 31 H 0.15 2.12 7.61 -2.91 -0.02 2.10 16 32 H 0.15 2.69 6.95 -2.91 -0.02 2.67 16 33 H 0.07 1.20 6.87 -2.39 -0.02 1.18 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.20 7.45 -2.39 -0.02 1.19 16 36 H 0.34 8.34 7.25 -89.69 -0.65 7.69 16 37 H 0.02 0.76 8.06 -2.39 -0.02 0.74 16 38 H 0.07 2.17 7.44 -2.39 -0.02 2.16 16 39 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -69.55 356.54 2.65 -66.90 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -0.30 Total: 12.98 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 3.76 Total: -28.93 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -2.47 Total: -76.91 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.37 Total: -20.33 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.55 2.65 -66.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607595031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.760 kcal (2) G-P(sol) polarization free energy of solvation -69.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds