Wall clock time and date at job start Tue Mar 31 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37971 * 119.92329 * 2 1 4 4 C 1.39613 * 119.84288 * 180.02562 * 3 2 1 5 5 C 1.47727 * 120.14519 * 179.97438 * 4 3 2 6 6 O 1.21472 * 119.99873 * 359.97438 * 5 4 3 7 7 O 1.34708 * 120.00199 * 179.97438 * 5 4 3 8 8 C 1.39642 * 119.70198 * 359.97438 * 4 3 2 9 9 C 1.37919 * 119.85310 * 359.97438 * 8 4 3 10 10 C 1.38344 * 119.92707 * 179.72263 * 2 1 3 11 11 C 1.50704 * 119.84675 * 0.02562 * 10 2 1 12 12 H 1.08999 * 109.47453 * 39.99473 * 11 10 2 13 13 C 1.53003 * 109.47097 * 280.00005 * 11 10 2 14 14 N 1.46894 * 109.47439 * 159.99740 * 11 10 2 15 15 C 1.46891 * 111.00319 * 204.99816 * 14 11 10 16 16 C 1.53002 * 109.47328 * 180.02562 * 15 14 11 17 17 C 1.53001 * 109.47055 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.46831 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00199 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00073 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99766 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00181 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47099 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47076 * 120.00240 * 22 20 18 25 25 H 1.48501 * 109.47093 * 240.00055 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.00224 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00324 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00305 * 1 2 3 29 29 H 1.07995 * 120.07717 * 359.97236 * 3 2 1 30 30 H 0.96695 * 117.00321 * 180.02562 * 7 5 4 31 31 H 1.08007 * 120.07331 * 179.97438 * 8 4 3 32 32 H 1.08001 * 119.93071 * 179.97438 * 9 8 4 33 33 H 1.09007 * 109.46815 * 300.00127 * 13 11 10 34 34 H 1.08996 * 109.47299 * 59.99634 * 13 11 10 35 35 H 1.08994 * 109.47042 * 180.02562 * 13 11 10 36 36 H 1.00901 * 111.00108 * 328.95336 * 14 11 10 37 37 H 1.09000 * 109.47553 * 299.99799 * 15 14 11 38 38 H 1.09007 * 109.47181 * 60.00045 * 15 14 11 39 39 H 1.09005 * 109.47084 * 299.99821 * 16 15 14 40 40 H 1.08998 * 109.47227 * 59.99904 * 16 15 14 41 41 H 1.08991 * 109.47329 * 299.99468 * 17 16 15 42 42 H 1.08997 * 109.46938 * 60.00178 * 17 16 15 43 43 H 0.96998 * 119.99922 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5914 1.1938 -0.0005 5 6 4.3351 2.4703 -0.0011 6 8 3.7318 3.5246 -0.0016 7 8 5.6822 2.4650 -0.0011 8 6 4.2816 -0.0201 -0.0005 9 6 3.5811 -1.2081 0.0005 10 6 2.1972 -1.1990 0.0058 11 6 1.4386 -2.5011 0.0115 12 1 0.5756 -2.4218 -0.6497 13 6 0.9648 -2.8091 1.4334 14 7 2.3166 -3.5815 -0.4569 15 6 1.5339 -4.6873 -1.0247 16 6 2.4809 -5.7911 -1.4999 17 6 1.6656 -6.9426 -2.0919 18 6 2.5984 -8.0295 -2.5605 19 1 3.6658 -7.9111 -2.4470 20 6 2.0889 -9.1756 -3.1332 21 7 0.7890 -9.3200 -3.2709 22 14 3.2451 -10.5232 -3.7134 23 1 4.6491 -10.1199 -3.4462 24 1 2.9445 -11.7813 -2.9838 25 1 3.0606 -10.7401 -5.1708 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6553 2.1311 -0.0005 30 1 6.1245 3.3248 -0.0011 31 1 5.3617 -0.0286 -0.0014 32 1 4.1136 -2.1477 0.0001 33 1 1.8278 -2.8884 2.0947 34 1 0.3133 -2.0074 1.7810 35 1 0.4165 -3.7511 1.4376 36 1 2.9909 -3.2362 -1.1234 37 1 0.8640 -5.0868 -0.2633 38 1 0.9484 -4.3222 -1.8685 39 1 3.1511 -5.3920 -2.2612 40 1 3.0660 -6.1561 -0.6559 41 1 0.9951 -7.3418 -1.3310 42 1 1.0808 -6.5772 -2.9360 43 1 0.4306 -10.1265 -3.6734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607595032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:39 Heat of formation + Delta-G solvation = -88.085632 kcal Electronic energy + Delta-G solvation = -22218.851952 eV Core-core repulsion = 18841.876312 eV Total energy + Delta-G solvation = -3376.975640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82412 -39.67572 -36.86680 -36.37873 -34.21754 -33.25994 -32.15531 -30.57318 -29.22839 -27.39096 -26.10028 -25.11597 -22.81439 -22.34727 -21.41000 -20.41524 -19.97391 -18.26311 -17.52970 -16.46466 -16.27546 -15.95543 -15.90762 -15.11077 -14.62664 -14.50249 -14.26073 -14.10870 -13.81681 -13.46622 -13.33879 -12.92167 -12.58191 -12.52344 -12.31965 -12.12612 -11.87619 -11.77091 -11.62925 -11.49943 -11.23076 -11.05940 -10.87516 -10.73056 -10.57077 -10.46925 -9.71777 -9.36543 -9.17096 -9.05837 -8.95123 -8.35214 -8.28668 -6.00062 -4.02034 0.38161 1.07352 2.22539 2.67738 3.31104 3.38588 3.42962 3.44973 4.17263 4.40105 4.47417 4.52694 4.63038 4.78481 4.91113 5.03142 5.19708 5.27392 5.35978 5.37690 5.39932 5.45677 5.65005 5.69826 5.74542 5.81764 5.85261 5.93879 5.98854 6.06567 6.13881 6.20206 6.27233 6.33077 6.57866 6.69025 6.75079 7.11763 7.27027 7.52641 7.54844 7.68183 7.82577 8.00387 8.43534 9.05445 9.62112 11.11435 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.002530 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.850851 B =11065.968509 C =11845.419021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.094 4.094 3 C -0.054 4.054 4 C -0.136 4.136 5 C 0.529 3.471 6 O -0.519 6.519 7 O -0.512 6.512 8 C -0.063 4.063 9 C -0.120 4.120 10 C -0.043 4.043 11 C 0.115 3.885 12 H 0.059 0.941 13 C -0.137 4.137 14 N -0.686 5.686 15 C 0.058 3.942 16 C -0.107 4.107 17 C 0.022 3.978 18 C -0.518 4.518 19 H 0.056 0.944 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.414 0.586 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.340 0.660 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 22.957 8.534 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.094 4.094 3 C -0.072 4.072 4 C -0.137 4.137 5 C 0.374 3.626 6 O -0.409 6.409 7 O -0.323 6.323 8 C -0.082 4.082 9 C -0.138 4.138 10 C -0.044 4.044 11 C 0.005 3.995 12 H 0.076 0.924 13 C -0.194 4.194 14 N -0.319 5.319 15 C -0.070 4.070 16 C -0.145 4.145 17 C -0.016 4.016 18 C -0.556 4.556 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.154 0.846 30 H 0.272 0.728 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.159 0.841 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.082 22.439 9.089 24.406 hybrid contribution 0.625 0.196 -1.252 1.413 sum 3.707 22.636 7.837 24.239 Atomic orbital electron populations 1.20952 0.90444 1.03551 1.02952 1.19676 0.96596 0.91819 1.01331 1.21065 0.91983 0.98440 0.95748 1.18984 0.93249 0.90580 1.10867 1.20961 0.80352 0.89481 0.71768 1.90881 1.69753 1.33562 1.46669 1.84569 1.21043 1.40924 1.85785 1.21468 1.00647 0.91012 0.95037 1.21191 0.93589 0.98832 1.00155 1.20277 0.94115 0.94554 0.95411 1.20534 0.94102 0.86988 0.97835 0.92370 1.21812 1.01354 1.01498 0.94777 1.60754 1.17573 1.09117 1.44421 1.22196 0.96295 0.91427 0.97063 1.21622 0.97898 0.95383 0.99564 1.19066 0.95176 0.91682 0.95660 1.21291 0.93277 1.01929 1.39113 0.92617 1.25036 0.95034 0.98456 0.96056 1.69977 1.11166 1.27576 1.44897 0.86544 0.81199 0.81952 0.78355 1.19717 1.21021 1.21058 0.90772 0.91209 0.90415 0.84629 0.72786 0.84400 0.83608 0.91716 0.92427 0.91712 0.84090 0.91268 0.95619 0.93662 0.92478 0.96573 0.96831 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.23 36.01 0.33 -0.63 16 2 C -0.09 -0.92 5.87 -104.68 -0.61 -1.53 16 3 C -0.05 -0.55 9.24 -39.17 -0.36 -0.91 16 4 C -0.14 -1.40 5.87 -104.98 -0.62 -2.02 16 5 C 0.53 5.43 8.27 34.61 0.29 5.72 16 6 O -0.52 -6.62 17.13 -19.24 -0.33 -6.95 16 7 O -0.51 -3.73 12.68 -40.51 -0.51 -4.24 16 8 C -0.06 -0.61 9.62 -39.17 -0.38 -0.98 16 9 C -0.12 -1.22 8.85 -39.64 -0.35 -1.57 16 10 C -0.04 -0.45 5.00 -104.52 -0.52 -0.98 16 11 C 0.12 1.30 2.15 -68.86 -0.15 1.16 16 12 H 0.06 0.67 6.92 -51.93 -0.36 0.31 16 13 C -0.14 -1.45 9.15 37.16 0.34 -1.11 16 14 N -0.69 -9.17 5.60 -107.95 -0.60 -9.78 16 15 C 0.06 0.96 5.48 -3.83 -0.02 0.94 16 16 C -0.11 -2.14 5.41 -26.73 -0.14 -2.29 16 17 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 18 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 22 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.08 0.60 4.97 -51.93 -0.26 0.34 16 29 H 0.14 1.29 7.65 -52.49 -0.40 0.89 16 30 H 0.41 1.14 9.11 45.56 0.42 1.56 16 31 H 0.14 1.11 7.61 -52.48 -0.40 0.71 16 32 H 0.15 1.44 6.67 -52.49 -0.35 1.09 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.51 6.38 -51.93 -0.33 0.18 16 35 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 36 H 0.34 4.32 6.95 -39.29 -0.27 4.04 16 37 H 0.07 1.15 7.44 -51.93 -0.39 0.76 16 38 H 0.03 0.42 8.06 -51.92 -0.42 0.01 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -32.65 355.45 -8.77 -41.42 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.65 Total: 1.07 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.75 Total: -17.28 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.13 Total: -36.00 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.84 Total: -11.20 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.65 -8.77 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607595032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.668 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds