Wall clock time and date at job start Tue Mar 31 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37971 * 119.92329 * 2 1 4 4 C 1.39613 * 119.84288 * 180.02562 * 3 2 1 5 5 C 1.47727 * 120.14519 * 179.97438 * 4 3 2 6 6 O 1.21472 * 119.99873 * 359.97438 * 5 4 3 7 7 O 1.34708 * 120.00199 * 179.97438 * 5 4 3 8 8 C 1.39642 * 119.70198 * 359.97438 * 4 3 2 9 9 C 1.37919 * 119.85310 * 359.97438 * 8 4 3 10 10 C 1.38344 * 119.92707 * 179.72263 * 2 1 3 11 11 C 1.50704 * 119.84675 * 0.02562 * 10 2 1 12 12 H 1.08999 * 109.47453 * 39.99473 * 11 10 2 13 13 C 1.53003 * 109.47097 * 280.00005 * 11 10 2 14 14 N 1.46894 * 109.47439 * 159.99740 * 11 10 2 15 15 C 1.46891 * 111.00319 * 204.99816 * 14 11 10 16 16 C 1.53002 * 109.47328 * 180.02562 * 15 14 11 17 17 C 1.53001 * 109.47055 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.46831 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00199 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00073 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99766 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00181 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47099 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47076 * 120.00240 * 22 20 18 25 25 H 1.48501 * 109.47093 * 240.00055 * 22 20 18 26 26 H 1.09002 * 109.47152 * 90.00224 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00324 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00305 * 1 2 3 29 29 H 1.07995 * 120.07717 * 359.97236 * 3 2 1 30 30 H 0.96695 * 117.00321 * 180.02562 * 7 5 4 31 31 H 1.08007 * 120.07331 * 179.97438 * 8 4 3 32 32 H 1.08001 * 119.93071 * 179.97438 * 9 8 4 33 33 H 1.09007 * 109.46815 * 300.00127 * 13 11 10 34 34 H 1.08996 * 109.47299 * 59.99634 * 13 11 10 35 35 H 1.08994 * 109.47042 * 180.02562 * 13 11 10 36 36 H 1.00901 * 111.00108 * 328.95336 * 14 11 10 37 37 H 1.09000 * 109.47553 * 299.99799 * 15 14 11 38 38 H 1.09007 * 109.47181 * 60.00045 * 15 14 11 39 39 H 1.09005 * 109.47084 * 299.99821 * 16 15 14 40 40 H 1.08998 * 109.47227 * 59.99904 * 16 15 14 41 41 H 1.08991 * 109.47329 * 299.99468 * 17 16 15 42 42 H 1.08997 * 109.46938 * 60.00178 * 17 16 15 43 43 H 0.96998 * 119.99922 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5914 1.1938 -0.0005 5 6 4.3351 2.4703 -0.0011 6 8 3.7318 3.5246 -0.0016 7 8 5.6822 2.4650 -0.0011 8 6 4.2816 -0.0201 -0.0005 9 6 3.5811 -1.2081 0.0005 10 6 2.1972 -1.1990 0.0058 11 6 1.4386 -2.5011 0.0115 12 1 0.5756 -2.4218 -0.6497 13 6 0.9648 -2.8091 1.4334 14 7 2.3166 -3.5815 -0.4569 15 6 1.5339 -4.6873 -1.0247 16 6 2.4809 -5.7911 -1.4999 17 6 1.6656 -6.9426 -2.0919 18 6 2.5984 -8.0295 -2.5605 19 1 3.6658 -7.9111 -2.4470 20 6 2.0889 -9.1756 -3.1332 21 7 0.7890 -9.3200 -3.2709 22 14 3.2451 -10.5232 -3.7134 23 1 4.6491 -10.1199 -3.4462 24 1 2.9445 -11.7813 -2.9838 25 1 3.0606 -10.7401 -5.1708 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6553 2.1311 -0.0005 30 1 6.1245 3.3248 -0.0011 31 1 5.3617 -0.0286 -0.0014 32 1 4.1136 -2.1477 0.0001 33 1 1.8278 -2.8884 2.0947 34 1 0.3133 -2.0074 1.7810 35 1 0.4165 -3.7511 1.4376 36 1 2.9909 -3.2362 -1.1234 37 1 0.8640 -5.0868 -0.2633 38 1 0.9484 -4.3222 -1.8685 39 1 3.1511 -5.3920 -2.2612 40 1 3.0660 -6.1561 -0.6559 41 1 0.9951 -7.3418 -1.3310 42 1 1.0808 -6.5772 -2.9360 43 1 0.4306 -10.1265 -3.6734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607595032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:38 Heat of formation + Delta-G solvation = -108.167241 kcal Electronic energy + Delta-G solvation = -22219.722756 eV Core-core repulsion = 18841.876312 eV Total energy + Delta-G solvation = -3377.846444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58998 -40.47236 -37.95058 -37.12596 -35.84194 -34.40311 -33.55475 -31.77535 -30.36936 -28.18874 -27.65481 -26.06831 -24.41464 -23.14557 -22.36659 -21.86913 -21.01402 -18.99982 -18.49951 -18.25767 -17.32377 -16.90126 -16.70468 -16.51855 -16.16199 -15.53402 -15.17556 -15.09883 -14.85068 -14.42068 -14.36482 -14.13935 -13.72446 -13.60397 -13.40658 -13.24409 -13.15035 -12.90990 -12.70075 -12.55400 -12.48200 -12.41803 -12.22165 -12.03681 -11.92392 -11.63091 -11.45821 -11.33802 -11.06015 -10.54514 -9.95898 -9.73128 -9.39087 -8.19193 -6.29699 -0.40175 0.32443 1.40910 1.41286 1.44767 1.54683 2.03148 2.41921 2.68314 3.12409 3.14242 3.56470 3.77859 3.90193 4.09619 4.19285 4.23065 4.28563 4.30892 4.40457 4.53504 4.67891 4.71238 4.74933 4.78606 4.89359 4.93006 4.98823 5.01504 5.14144 5.20814 5.23681 5.27078 5.32547 5.42021 5.48489 5.54234 5.56144 5.77922 5.82656 5.88259 6.08056 6.28800 6.44919 6.87879 6.92618 7.39587 8.92895 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.002530 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.850851 B =11065.968509 C =11845.419021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.094 4.094 3 C -0.061 4.061 4 C -0.147 4.147 5 C 0.535 3.465 6 O -0.550 6.550 7 O -0.503 6.503 8 C -0.060 4.060 9 C -0.125 4.125 10 C -0.051 4.051 11 C 0.118 3.882 12 H 0.060 0.940 13 C -0.134 4.134 14 N -0.683 5.683 15 C 0.073 3.927 16 C -0.092 4.092 17 C 0.025 3.975 18 C -0.540 4.540 19 H 0.059 0.941 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.278 1.278 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.139 0.861 30 H 0.433 0.567 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.345 0.655 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.050 0.950 40 H 0.054 0.946 41 H -0.008 1.008 42 H -0.010 1.010 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 23.525 8.745 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.094 4.094 3 C -0.079 4.079 4 C -0.148 4.148 5 C 0.381 3.619 6 O -0.442 6.442 7 O -0.317 6.317 8 C -0.078 4.078 9 C -0.143 4.143 10 C -0.052 4.052 11 C 0.009 3.991 12 H 0.077 0.923 13 C -0.192 4.192 14 N -0.316 5.316 15 C -0.056 4.056 16 C -0.130 4.130 17 C -0.013 4.013 18 C -0.578 4.578 19 H 0.078 0.922 20 C -0.200 4.200 21 N -0.575 5.575 22 Si 0.789 3.211 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.204 1.204 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.296 0.704 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.165 0.835 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.352 23.030 9.309 25.218 hybrid contribution 0.266 0.069 -1.304 1.333 sum 4.618 23.099 8.005 24.879 Atomic orbital electron populations 1.21006 0.89183 1.04337 1.03450 1.19834 0.97560 0.91359 1.00664 1.21187 0.92177 0.98709 0.95820 1.19161 0.93584 0.91009 1.11041 1.20937 0.81052 0.88933 0.70985 1.90870 1.70540 1.34489 1.48331 1.84524 1.19599 1.42624 1.84979 1.21592 1.01399 0.90444 0.94364 1.21261 0.93557 0.99173 1.00286 1.20237 0.94323 0.94282 0.96346 1.20528 0.93828 0.86681 0.98083 0.92256 1.21801 1.01378 1.01770 0.94251 1.60671 1.17599 1.09288 1.44071 1.21876 0.95429 0.91416 0.96908 1.21365 0.97709 0.94682 0.99237 1.18974 0.94891 0.93162 0.94273 1.21739 0.93878 1.02961 1.39261 0.92227 1.25988 0.96729 1.01161 0.96116 1.70102 1.13148 1.28519 1.45702 0.85408 0.79265 0.78538 0.77893 1.18558 1.20408 1.20410 0.90371 0.89896 0.90178 0.84314 0.70446 0.82874 0.83440 0.92196 0.90540 0.92630 0.83489 0.91631 0.95849 0.93156 0.92702 0.98978 0.99149 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.23 71.24 0.66 -1.08 16 2 C -0.09 -1.70 5.87 -19.90 -0.12 -1.82 16 3 C -0.06 -1.16 9.24 22.54 0.21 -0.95 16 4 C -0.15 -2.85 5.87 -20.10 -0.12 -2.96 16 5 C 0.53 10.29 8.27 70.33 0.58 10.88 16 6 O -0.55 -13.62 17.13 19.93 0.34 -13.28 16 7 O -0.50 -6.35 12.68 -56.18 -0.71 -7.06 16 8 C -0.06 -1.05 9.62 22.53 0.22 -0.83 16 9 C -0.12 -2.36 8.85 22.23 0.20 -2.16 16 10 C -0.05 -1.01 5.00 -19.80 -0.10 -1.11 16 11 C 0.12 2.53 2.15 44.17 0.09 2.62 16 12 H 0.06 1.29 6.92 -2.39 -0.02 1.27 16 13 C -0.13 -2.69 9.15 71.98 0.66 -2.03 16 14 N -0.68 -17.53 5.60 -495.46 -2.78 -20.31 16 15 C 0.07 2.35 5.48 86.31 0.47 2.82 16 16 C -0.09 -3.68 5.41 30.60 0.17 -3.52 16 17 C 0.02 1.29 4.97 29.85 0.15 1.44 16 18 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 20 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 21 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 22 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 0.94 8.08 -2.39 -0.02 0.93 16 28 H 0.08 1.08 4.97 -2.38 -0.01 1.07 16 29 H 0.14 2.51 7.65 -2.91 -0.02 2.49 16 30 H 0.43 1.50 9.11 -74.06 -0.67 0.82 16 31 H 0.15 2.14 7.61 -2.91 -0.02 2.12 16 32 H 0.15 2.70 6.67 -2.91 -0.02 2.68 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.08 1.22 6.38 -2.39 -0.02 1.21 16 35 H 0.05 1.21 7.45 -2.39 -0.02 1.19 16 36 H 0.35 8.31 6.95 -89.69 -0.62 7.68 16 37 H 0.07 2.17 7.44 -2.39 -0.02 2.16 16 38 H 0.02 0.77 8.06 -2.38 -0.02 0.75 16 39 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 41 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -69.66 355.45 2.66 -67.00 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -0.27 Total: 12.95 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.76 Total: -28.95 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -2.49 Total: -76.95 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.37 Total: -20.34 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.66 2.66 -67.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607595032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.170 kcal (2) G-P(sol) polarization free energy of solvation -69.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds