Wall clock time and date at job start Tue Mar 31 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99808 * 2 1 4 4 C 1.38234 * 119.99814 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00196 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00061 * 0.07178 * 4 3 2 7 7 C 1.38234 * 119.99689 * 359.90912 * 6 4 3 8 8 C 1.50703 * 119.99503 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.46665 * 159.97547 * 8 7 6 10 10 N 1.46896 * 109.47483 * 39.97475 * 8 7 6 11 11 C 1.46900 * 111.00228 * 155.00214 * 10 8 7 12 12 C 1.53000 * 109.47271 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46955 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46948 * 179.97438 * 13 12 11 15 15 H 1.07991 * 120.00118 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99760 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99679 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00278 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47119 * 89.99477 * 18 16 14 20 20 H 1.48494 * 109.46882 * 209.99635 * 18 16 14 21 21 H 1.48503 * 109.46723 * 329.99212 * 18 16 14 22 22 C 1.50705 * 109.46901 * 279.97332 * 8 7 6 23 23 O 1.20819 * 120.00238 * 120.00380 * 22 8 7 24 24 O 1.34233 * 119.99853 * 300.00187 * 22 8 7 25 25 C 1.38230 * 119.99865 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46961 * 89.99933 * 1 2 3 27 27 H 1.08993 * 109.47341 * 210.00461 * 1 2 3 28 28 H 1.09001 * 109.46864 * 330.00546 * 1 2 3 29 29 H 1.08000 * 120.00616 * 359.70324 * 3 2 1 30 30 H 1.09001 * 109.47063 * 90.00208 * 5 4 3 31 31 H 1.08998 * 109.47268 * 210.00355 * 5 4 3 32 32 H 1.08998 * 109.47151 * 330.00502 * 5 4 3 33 33 H 1.07997 * 119.99852 * 179.97438 * 6 4 3 34 34 H 1.00898 * 110.99990 * 278.95401 * 10 8 7 35 35 H 1.09004 * 109.46565 * 300.00090 * 11 10 8 36 36 H 1.09001 * 109.47168 * 59.99547 * 11 10 8 37 37 H 1.08997 * 109.46491 * 299.99445 * 12 11 10 38 38 H 1.08997 * 109.47265 * 60.00111 * 12 11 10 39 39 H 1.09004 * 109.46825 * 299.99966 * 13 12 11 40 40 H 1.09001 * 109.47224 * 59.99617 * 13 12 11 41 41 H 0.97001 * 119.99579 * 180.02562 * 17 16 14 42 42 H 0.96701 * 116.99934 * 180.02562 * 24 22 8 43 43 H 1.08001 * 120.00371 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3341 2.5023 0.0000 6 6 4.2717 0.0000 -0.0004 7 6 3.5805 -1.1971 0.0000 8 6 4.3340 -2.5022 -0.0005 9 1 3.6797 -3.2996 0.3518 10 7 5.4986 -2.3957 0.8885 11 6 5.9046 -3.7172 1.3851 12 6 7.1170 -3.5657 2.3059 13 6 7.5394 -4.9421 2.8235 14 6 8.7340 -4.7930 3.7301 15 1 9.1500 -3.8144 3.9185 16 6 9.2951 -5.9059 4.3197 17 7 10.3379 -5.7757 5.1104 18 14 8.5751 -7.5986 3.9943 19 1 9.2380 -8.1989 2.8089 20 1 8.7972 -8.4668 5.1783 21 1 7.1177 -7.4754 3.7372 22 6 4.7975 -2.8141 -1.4002 23 8 5.9768 -2.9352 -1.6332 24 8 3.9000 -2.9575 -2.3880 25 6 2.1981 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.6582 2.1325 -0.0048 30 1 4.5154 2.8176 1.0275 31 1 5.2866 2.3716 -0.5135 32 1 3.7452 3.2616 -0.5145 33 1 5.3517 0.0000 -0.0004 34 1 6.2658 -1.9321 0.4254 35 1 5.0806 -4.1655 1.9404 36 1 6.1655 -4.3575 0.5424 37 1 7.9409 -3.1173 1.7508 38 1 6.8555 -2.9257 3.1486 39 1 6.7152 -5.3902 3.3787 40 1 7.8007 -5.5826 1.9812 41 1 10.7329 -6.5587 5.5249 42 1 4.2450 -3.1575 -3.2690 43 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607625167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:15 Heat of formation + Delta-G solvation = -88.352882 kcal Electronic energy + Delta-G solvation = -22676.731113 eV Core-core repulsion = 19299.743883 eV Total energy + Delta-G solvation = -3376.987229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86033 -39.50803 -36.96757 -35.94214 -34.08323 -33.69545 -32.49455 -30.95128 -28.18945 -27.24612 -26.93738 -25.57056 -22.77638 -22.13317 -20.94843 -20.50483 -19.89677 -18.27087 -17.30526 -16.79203 -16.50177 -16.12519 -15.70206 -15.01834 -14.55323 -14.30966 -14.21010 -13.96318 -13.80075 -13.40638 -13.30862 -13.07909 -12.75914 -12.63727 -12.52245 -12.09701 -12.03911 -11.79161 -11.77140 -11.72414 -11.24385 -11.14564 -10.96213 -10.88939 -10.75518 -9.96341 -9.73436 -9.60186 -9.15080 -8.80005 -8.69119 -8.60204 -8.50339 -6.00798 -3.98370 1.12626 1.24067 1.99248 2.84422 3.33060 3.39970 3.43687 3.53887 4.11121 4.43751 4.48195 4.59495 4.59958 4.93278 4.98520 5.05786 5.12323 5.16787 5.33094 5.35022 5.36255 5.40916 5.45205 5.58749 5.62226 5.67520 5.72729 5.93164 6.01487 6.13218 6.27084 6.31670 6.38163 6.43409 6.52053 6.56119 6.84669 6.91099 6.99109 7.27845 7.35881 7.48072 7.67586 7.83210 8.58398 9.04890 9.61795 11.12837 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.003149 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.747283 B = 8888.971994 C = 9236.994502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.118 4.118 4 C -0.084 4.084 5 C -0.114 4.114 6 C -0.098 4.098 7 C -0.062 4.062 8 C 0.137 3.863 9 H 0.123 0.877 10 N -0.652 5.652 11 C 0.050 3.950 12 C -0.098 4.098 13 C -0.012 4.012 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.454 3.546 23 O -0.509 6.509 24 O -0.513 6.513 25 C -0.105 4.105 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.353 0.647 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.016 0.984 40 H 0.009 0.991 41 H 0.262 0.738 42 H 0.405 0.595 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.836 13.121 -15.088 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.136 4.136 4 C -0.084 4.084 5 C -0.171 4.171 6 C -0.116 4.116 7 C -0.063 4.063 8 C 0.024 3.976 9 H 0.141 0.859 10 N -0.285 5.285 11 C -0.078 4.078 12 C -0.136 4.136 13 C -0.050 4.050 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C 0.293 3.707 23 O -0.396 6.396 24 O -0.323 6.323 25 C -0.123 4.123 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.174 0.826 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.028 0.972 41 H 0.072 0.928 42 H 0.264 0.736 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.889 13.217 -14.086 28.451 hybrid contribution 0.518 -1.581 -1.481 2.227 sum -20.370 11.636 -15.567 28.154 Atomic orbital electron populations 1.20771 0.91131 1.02798 1.02222 1.19804 0.95974 0.92882 0.99930 1.20904 0.93477 0.97490 1.01736 1.19867 0.93771 0.95232 0.99557 1.20791 0.99867 0.93857 1.02575 1.20834 1.00012 0.91174 0.99584 1.19224 0.93182 0.92771 1.01083 1.20324 0.95685 0.97389 0.84184 0.85897 1.61019 1.09018 1.22239 1.36194 1.22345 0.99624 0.87781 0.98073 1.21420 0.94199 1.00220 0.97719 1.19539 0.96934 0.92581 0.95966 1.21142 1.12084 0.95532 1.26831 0.90976 1.25040 0.94686 0.99133 0.94736 1.69922 1.22660 1.30063 1.31757 0.86766 0.80256 0.84442 0.77741 1.20380 1.21405 1.19039 1.24955 0.84545 0.72252 0.88918 1.90758 1.18737 1.46597 1.83522 1.84591 1.43259 1.82721 1.21749 1.20805 0.92897 0.97862 1.00749 0.91274 0.91454 0.91621 0.86228 0.90921 0.91479 0.91712 0.85906 0.82556 0.91005 0.94879 0.92762 0.91729 0.96569 0.97231 0.92790 0.73639 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.09 -0.81 5.88 -104.63 -0.62 -1.42 16 3 C -0.12 -1.11 9.36 -39.58 -0.37 -1.48 16 4 C -0.08 -0.86 5.88 -104.62 -0.62 -1.48 16 5 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 6 C -0.10 -1.13 8.98 -39.58 -0.36 -1.49 16 7 C -0.06 -0.71 4.88 -104.62 -0.51 -1.22 16 8 C 0.14 1.67 2.70 -70.01 -0.19 1.48 16 9 H 0.12 1.35 7.66 -51.93 -0.40 0.95 16 10 N -0.65 -9.40 5.56 -109.18 -0.61 -10.01 16 11 C 0.05 0.83 5.38 -3.82 -0.02 0.81 16 12 C -0.10 -1.99 5.41 -26.73 -0.14 -2.13 16 13 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 14 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 15 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -28.49 13.96 55.43 0.77 -27.71 16 18 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 22 C 0.45 5.71 7.44 36.01 0.27 5.98 16 23 O -0.51 -7.99 16.06 -18.74 -0.30 -8.29 16 24 O -0.51 -4.97 13.34 -39.27 -0.52 -5.49 16 25 C -0.10 -1.07 9.33 -39.59 -0.37 -1.44 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 1.43 7.25 -52.49 -0.38 1.05 16 34 H 0.35 5.22 7.10 -39.29 -0.28 4.94 16 35 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 36 H 0.03 0.57 7.62 -51.93 -0.40 0.17 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.41 2.32 9.10 45.56 0.41 2.74 16 43 H 0.12 1.06 8.04 -52.49 -0.42 0.64 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -34.07 360.42 -8.66 -42.74 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.02 Total: 3.23 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.74 Total: -17.40 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.17 Total: -37.73 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.82 Total: -13.78 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.07 -8.66 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607625167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.617 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds