Wall clock time and date at job start Tue Mar 31 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99808 * 2 1 4 4 C 1.38234 * 119.99814 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00196 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00061 * 0.07178 * 4 3 2 7 7 C 1.38234 * 119.99689 * 359.90912 * 6 4 3 8 8 C 1.50703 * 119.99503 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.46665 * 159.97547 * 8 7 6 10 10 N 1.46896 * 109.47483 * 39.97475 * 8 7 6 11 11 C 1.46900 * 111.00228 * 155.00214 * 10 8 7 12 12 C 1.53000 * 109.47271 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46955 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46948 * 179.97438 * 13 12 11 15 15 H 1.07991 * 120.00118 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99760 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99679 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00278 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47119 * 89.99477 * 18 16 14 20 20 H 1.48494 * 109.46882 * 209.99635 * 18 16 14 21 21 H 1.48503 * 109.46723 * 329.99212 * 18 16 14 22 22 C 1.50705 * 109.46901 * 279.97332 * 8 7 6 23 23 O 1.20819 * 120.00238 * 120.00380 * 22 8 7 24 24 O 1.34233 * 119.99853 * 300.00187 * 22 8 7 25 25 C 1.38230 * 119.99865 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46961 * 89.99933 * 1 2 3 27 27 H 1.08993 * 109.47341 * 210.00461 * 1 2 3 28 28 H 1.09001 * 109.46864 * 330.00546 * 1 2 3 29 29 H 1.08000 * 120.00616 * 359.70324 * 3 2 1 30 30 H 1.09001 * 109.47063 * 90.00208 * 5 4 3 31 31 H 1.08998 * 109.47268 * 210.00355 * 5 4 3 32 32 H 1.08998 * 109.47151 * 330.00502 * 5 4 3 33 33 H 1.07997 * 119.99852 * 179.97438 * 6 4 3 34 34 H 1.00898 * 110.99990 * 278.95401 * 10 8 7 35 35 H 1.09004 * 109.46565 * 300.00090 * 11 10 8 36 36 H 1.09001 * 109.47168 * 59.99547 * 11 10 8 37 37 H 1.08997 * 109.46491 * 299.99445 * 12 11 10 38 38 H 1.08997 * 109.47265 * 60.00111 * 12 11 10 39 39 H 1.09004 * 109.46825 * 299.99966 * 13 12 11 40 40 H 1.09001 * 109.47224 * 59.99617 * 13 12 11 41 41 H 0.97001 * 119.99579 * 180.02562 * 17 16 14 42 42 H 0.96701 * 116.99934 * 180.02562 * 24 22 8 43 43 H 1.08001 * 120.00371 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3341 2.5023 0.0000 6 6 4.2717 0.0000 -0.0004 7 6 3.5805 -1.1971 0.0000 8 6 4.3340 -2.5022 -0.0005 9 1 3.6797 -3.2996 0.3518 10 7 5.4986 -2.3957 0.8885 11 6 5.9046 -3.7172 1.3851 12 6 7.1170 -3.5657 2.3059 13 6 7.5394 -4.9421 2.8235 14 6 8.7340 -4.7930 3.7301 15 1 9.1500 -3.8144 3.9185 16 6 9.2951 -5.9059 4.3197 17 7 10.3379 -5.7757 5.1104 18 14 8.5751 -7.5986 3.9943 19 1 9.2380 -8.1989 2.8089 20 1 8.7972 -8.4668 5.1783 21 1 7.1177 -7.4754 3.7372 22 6 4.7975 -2.8141 -1.4002 23 8 5.9768 -2.9352 -1.6332 24 8 3.9000 -2.9575 -2.3880 25 6 2.1981 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.6582 2.1325 -0.0048 30 1 4.5154 2.8176 1.0275 31 1 5.2866 2.3716 -0.5135 32 1 3.7452 3.2616 -0.5145 33 1 5.3517 0.0000 -0.0004 34 1 6.2658 -1.9321 0.4254 35 1 5.0806 -4.1655 1.9404 36 1 6.1655 -4.3575 0.5424 37 1 7.9409 -3.1173 1.7508 38 1 6.8555 -2.9257 3.1486 39 1 6.7152 -5.3902 3.3787 40 1 7.8007 -5.5826 1.9812 41 1 10.7329 -6.5587 5.5249 42 1 4.2450 -3.1575 -3.2690 43 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607625167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:15 Heat of formation + Delta-G solvation = -110.404451 kcal Electronic energy + Delta-G solvation = -22677.687340 eV Core-core repulsion = 19299.743883 eV Total energy + Delta-G solvation = -3377.943457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.80888 -40.29237 -38.04535 -37.02026 -35.71448 -34.36061 -34.16705 -32.41895 -29.41407 -28.08090 -27.66018 -26.97836 -24.13490 -23.28978 -22.15115 -21.50937 -21.09485 -19.22527 -18.93246 -18.26112 -17.45039 -17.01933 -16.57283 -16.37705 -16.14329 -15.63961 -15.27323 -14.89882 -14.78192 -14.67533 -14.22420 -13.94739 -13.80776 -13.70093 -13.65367 -13.40571 -13.27268 -12.81393 -12.69548 -12.65649 -12.56841 -12.49308 -12.08379 -11.88947 -11.83842 -11.78850 -11.56301 -11.50668 -11.29609 -10.77182 -9.80586 -9.55049 -9.40943 -8.29960 -6.34417 0.34539 0.48787 1.03096 1.35366 1.37390 1.49744 1.99125 2.36057 2.70283 3.05170 3.08117 3.56824 3.80036 3.96187 4.08058 4.17365 4.19507 4.27512 4.31296 4.49924 4.54569 4.61808 4.63977 4.74121 4.81643 4.83208 4.90107 4.91881 5.00567 5.06680 5.10074 5.25513 5.38959 5.42021 5.47222 5.56194 5.58468 5.63804 5.65658 5.72444 5.83163 6.07426 6.13740 6.28779 6.73588 6.84081 7.29990 8.87204 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.003149 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.747283 B = 8888.971994 C = 9236.994502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.123 4.123 4 C -0.094 4.094 5 C -0.114 4.114 6 C -0.120 4.120 7 C -0.073 4.073 8 C 0.138 3.862 9 H 0.140 0.860 10 N -0.655 5.655 11 C 0.064 3.936 12 C -0.089 4.089 13 C -0.009 4.009 14 C -0.534 4.534 15 H 0.029 0.971 16 C 0.001 3.999 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.242 1.242 22 C 0.461 3.539 23 O -0.546 6.546 24 O -0.503 6.503 25 C -0.113 4.113 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.349 0.651 35 H 0.087 0.913 36 H 0.029 0.971 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.026 0.974 40 H 0.015 0.985 41 H 0.267 0.733 42 H 0.424 0.576 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.067 12.529 -16.336 31.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.141 4.141 4 C -0.094 4.094 5 C -0.170 4.170 6 C -0.139 4.139 7 C -0.073 4.073 8 C 0.026 3.974 9 H 0.158 0.842 10 N -0.286 5.286 11 C -0.064 4.064 12 C -0.127 4.127 13 C -0.047 4.047 14 C -0.572 4.572 15 H 0.047 0.953 16 C -0.196 4.196 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.166 1.166 22 C 0.303 3.697 23 O -0.437 6.437 24 O -0.314 6.314 25 C -0.131 4.131 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.159 0.841 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.169 0.831 35 H 0.106 0.894 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.285 0.715 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.157 12.644 -15.365 31.297 hybrid contribution 1.518 -1.258 -1.119 2.267 sum -22.638 11.386 -16.484 30.230 Atomic orbital electron populations 1.20822 0.89088 1.03693 1.03155 1.20177 0.97518 0.92515 0.98667 1.21221 0.93227 0.98623 1.01014 1.20142 0.94528 0.95507 0.99214 1.20823 0.99873 0.93407 1.02908 1.20904 0.99711 0.92137 1.01135 1.19217 0.93803 0.92118 1.02198 1.20360 0.94713 0.98591 0.83775 0.84249 1.60937 1.09510 1.20786 1.37417 1.22075 0.98227 0.88932 0.97196 1.21228 0.95668 0.97752 0.98085 1.19477 0.95080 0.94957 0.95164 1.21507 1.13835 0.93959 1.27930 0.95271 1.26085 0.95004 1.04187 0.94283 1.70081 1.24456 1.31695 1.33176 0.85596 0.80599 0.78130 0.77945 1.19398 1.20774 1.16565 1.24911 0.84054 0.71256 0.89523 1.90751 1.20261 1.48511 1.84166 1.84533 1.42363 1.81993 1.22549 1.21039 0.92378 0.99069 1.00612 0.90202 0.90778 0.90581 0.84115 0.90728 0.91744 0.89986 0.87071 0.83084 0.89428 0.95309 0.94042 0.92557 0.95531 0.96674 0.92469 0.71457 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 2 C -0.09 -1.45 5.88 -19.87 -0.12 -1.57 16 3 C -0.12 -2.06 9.36 22.27 0.21 -1.85 16 4 C -0.09 -1.83 5.88 -19.86 -0.12 -1.95 16 5 C -0.11 -1.71 10.01 71.24 0.71 -1.00 16 6 C -0.12 -2.77 8.98 22.27 0.20 -2.57 16 7 C -0.07 -1.59 4.88 -19.87 -0.10 -1.69 16 8 C 0.14 3.19 2.70 43.43 0.12 3.31 16 9 H 0.14 2.73 7.66 -2.39 -0.02 2.71 16 10 N -0.65 -18.62 5.56 -499.35 -2.77 -21.40 16 11 C 0.06 2.07 5.38 86.30 0.46 2.53 16 12 C -0.09 -3.66 5.41 30.59 0.17 -3.50 16 13 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 14 C -0.53 -32.09 9.66 25.60 0.25 -31.84 16 15 H 0.03 1.93 7.99 -2.92 -0.02 1.91 16 16 C 0.00 0.05 5.47 84.66 0.46 0.51 16 17 N -0.95 -61.54 13.96 21.45 0.30 -61.24 16 18 Si 0.95 45.24 27.47 68.60 1.88 47.13 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.24 -10.51 6.54 99.48 0.65 -9.86 16 22 C 0.46 11.09 7.44 71.24 0.53 11.62 16 23 O -0.55 -17.02 16.06 21.98 0.35 -16.66 16 24 O -0.50 -8.70 13.34 -51.45 -0.69 -9.39 16 25 C -0.11 -2.07 9.33 22.27 0.21 -1.86 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 28 H 0.08 0.63 8.09 -2.39 -0.02 0.62 16 29 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 0.98 8.08 -2.39 -0.02 0.97 16 32 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 33 H 0.11 2.70 7.25 -2.91 -0.02 2.68 16 34 H 0.35 10.54 7.10 -89.70 -0.64 9.90 16 35 H 0.09 2.55 8.06 -2.38 -0.02 2.53 16 36 H 0.03 0.96 7.62 -2.39 -0.02 0.94 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.03 1.23 7.20 -2.38 -0.02 1.21 16 40 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 41 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 42 H 0.42 3.97 9.10 -74.06 -0.67 3.30 16 43 H 0.14 2.00 8.04 -2.91 -0.02 1.98 16 Total: -1.00 -74.80 360.42 2.54 -72.25 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -0.35 Total: 19.89 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 3.82 Total: -30.58 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.47 Total: -82.64 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.33 Total: -26.05 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Total: -74.80 2.54 -72.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607625167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.151 kcal (2) G-P(sol) polarization free energy of solvation -74.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds