Wall clock time and date at job start Tue Mar 31 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38236 * 119.99838 * 2 1 4 4 C 1.38237 * 119.99933 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99771 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99824 * 359.97438 * 4 3 2 7 7 C 1.38235 * 120.00362 * 359.97438 * 6 4 3 8 8 C 1.50696 * 120.00112 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.47385 * 19.99513 * 8 7 6 10 10 N 1.46892 * 109.47409 * 139.99685 * 8 7 6 11 11 C 1.46898 * 111.00435 * 204.99746 * 10 8 7 12 12 C 1.52998 * 109.47278 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47104 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47351 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99471 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00129 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00174 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46805 * 89.99756 * 18 16 14 20 20 H 1.48496 * 109.46931 * 209.99694 * 18 16 14 21 21 H 1.48504 * 109.47080 * 330.00122 * 18 16 14 22 22 C 1.50706 * 109.46754 * 259.99762 * 8 7 6 23 23 O 1.20825 * 119.99859 * 239.99451 * 22 8 7 24 24 O 1.34224 * 120.00295 * 60.00410 * 22 8 7 25 25 C 1.38231 * 120.00293 * 180.16434 * 2 1 3 26 26 H 1.08999 * 109.46926 * 90.00151 * 1 2 3 27 27 H 1.09004 * 109.46794 * 209.99959 * 1 2 3 28 28 H 1.08997 * 109.47245 * 329.99686 * 1 2 3 29 29 H 1.08003 * 120.00106 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47504 * 269.97742 * 5 4 3 31 31 H 1.09006 * 109.47160 * 29.97980 * 5 4 3 32 32 H 1.09002 * 109.46895 * 149.97673 * 5 4 3 33 33 H 1.08007 * 119.99686 * 179.97438 * 6 4 3 34 34 H 1.00905 * 111.00068 * 81.04030 * 10 8 7 35 35 H 1.09000 * 109.47370 * 300.00193 * 11 10 8 36 36 H 1.09000 * 109.47186 * 59.99930 * 11 10 8 37 37 H 1.08996 * 109.47380 * 300.00014 * 12 11 10 38 38 H 1.09000 * 109.47354 * 60.00565 * 12 11 10 39 39 H 1.09000 * 109.47577 * 300.00503 * 13 12 11 40 40 H 1.09005 * 109.46854 * 60.00001 * 13 12 11 41 41 H 0.97000 * 120.00064 * 179.97438 * 17 16 14 42 42 H 0.96700 * 117.00196 * 179.97438 * 24 22 8 43 43 H 1.08001 * 120.00145 * 0.06861 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5024 0.0000 6 6 4.2717 0.0001 0.0016 7 6 3.5805 -1.1971 0.0027 8 6 4.3341 -2.5021 0.0044 9 1 5.3519 -2.3336 0.3560 10 7 3.6599 -3.4557 0.8955 11 6 4.6016 -4.4671 1.3936 12 6 3.8645 -5.4396 2.3166 13 6 4.8452 -6.4934 2.8349 14 6 4.1191 -7.4517 3.7435 15 1 3.0636 -7.3222 3.9320 16 6 4.8023 -8.4935 4.3340 17 7 6.0875 -8.6514 4.1041 18 14 3.9023 -9.6810 5.4609 19 1 3.3671 -10.8123 4.6616 20 1 4.8432 -10.2002 6.4856 21 1 2.7812 -8.9742 6.1309 22 6 4.3720 -3.0621 -1.3942 23 8 3.8872 -4.1445 -1.6250 24 8 4.9445 -2.3585 -2.3836 25 6 2.1982 -1.1971 -0.0034 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6581 2.1325 -0.0004 30 1 4.5164 2.8162 -1.0278 31 1 3.7445 3.2625 0.5128 32 1 5.2860 2.3725 0.5146 33 1 5.3517 0.0001 0.0016 34 1 2.8746 -3.8892 0.4335 35 1 5.0253 -5.0149 0.5519 36 1 5.4019 -3.9767 1.9478 37 1 3.4411 -4.8915 3.1583 38 1 3.0640 -5.9301 1.7628 39 1 5.2683 -7.0414 1.9930 40 1 5.6461 -6.0032 3.3886 41 1 6.5682 -9.3842 4.5198 42 1 4.9450 -2.7589 -3.2637 43 1 1.6583 -2.1324 -0.0072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607625169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:18 Heat of formation + Delta-G solvation = -92.107592 kcal Electronic energy + Delta-G solvation = -22620.520642 eV Core-core repulsion = 19243.370597 eV Total energy + Delta-G solvation = -3377.150046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.80117 -39.46829 -36.88544 -35.86382 -33.99712 -33.66846 -32.50249 -30.69000 -27.99016 -27.12731 -26.89073 -25.37238 -22.81885 -22.22009 -20.96312 -20.45305 -19.91025 -18.20789 -17.21088 -16.65124 -16.26463 -16.00240 -15.65859 -14.92394 -14.55113 -14.26857 -14.20860 -13.96818 -13.80330 -13.39882 -13.23425 -13.04014 -12.72898 -12.55043 -12.24820 -12.02993 -11.84071 -11.74590 -11.65534 -11.53564 -11.17479 -11.10494 -10.88453 -10.76439 -10.57972 -10.48518 -9.69963 -9.35225 -9.04861 -8.75580 -8.65592 -8.52234 -8.31151 -5.96473 -3.98339 1.16247 1.27092 2.05645 2.90494 3.34936 3.40728 3.44682 3.57691 4.18190 4.47927 4.51234 4.62569 4.63977 4.99430 5.02061 5.11957 5.15627 5.19992 5.37217 5.39409 5.39987 5.43666 5.45862 5.65197 5.69355 5.72459 5.85906 5.96242 6.04387 6.28017 6.34268 6.37405 6.41707 6.48047 6.65749 6.72198 6.88559 7.10457 7.16029 7.38527 7.71476 7.73944 7.86268 8.03878 8.47018 9.08666 9.65447 11.15088 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.003004 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.614627 B = 9319.710275 C = 9766.166636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.118 4.118 4 C -0.086 4.086 5 C -0.112 4.112 6 C -0.104 4.104 7 C -0.061 4.061 8 C 0.137 3.863 9 H 0.124 0.876 10 N -0.653 5.653 11 C 0.052 3.948 12 C -0.105 4.105 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.454 3.546 23 O -0.509 6.509 24 O -0.513 6.513 25 C -0.098 4.098 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.351 0.649 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.014 0.986 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.405 0.595 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.268 22.781 -12.691 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.137 4.137 4 C -0.086 4.086 5 C -0.169 4.169 6 C -0.123 4.123 7 C -0.062 4.062 8 C 0.024 3.976 9 H 0.141 0.859 10 N -0.285 5.285 11 C -0.076 4.076 12 C -0.143 4.143 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C 0.293 3.707 23 O -0.396 6.396 24 O -0.323 6.323 25 C -0.116 4.116 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.173 0.827 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.263 0.737 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.199 22.924 -11.751 26.280 hybrid contribution -0.206 -1.695 -0.784 1.879 sum -5.405 21.229 -12.535 25.239 Atomic orbital electron populations 1.20789 0.91141 1.02968 1.02189 1.19856 0.96079 0.92898 0.99666 1.20899 0.93510 0.97433 1.01814 1.19806 0.93758 0.95096 0.99942 1.20771 0.99954 0.93975 1.02214 1.20816 0.99732 0.91057 1.00677 1.19241 0.93599 0.92418 1.00898 1.20329 1.00806 0.92278 0.84202 0.85867 1.61048 1.11002 1.20546 1.35941 1.22320 0.94969 0.92187 0.98080 1.21604 0.99233 0.96120 0.97358 1.19061 0.94089 0.92483 0.95862 1.21249 0.95629 1.11138 1.27600 0.92633 1.25028 0.94866 0.97819 0.96828 1.69966 1.07831 1.31448 1.44407 0.86590 0.79553 0.81287 0.80555 1.20715 1.21252 1.19832 1.24959 0.73672 0.83150 0.88870 1.90757 1.43578 1.21722 1.83551 1.84589 1.73743 1.52287 1.21726 1.20827 0.93363 0.97807 0.99630 0.91345 0.91245 0.91592 0.86264 0.91280 0.91648 0.91438 0.85846 0.82741 0.94852 0.91006 0.92365 0.93386 0.96753 0.96524 0.93055 0.73673 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.12 -1.14 9.36 -39.58 -0.37 -1.51 16 4 C -0.09 -0.83 5.88 -104.62 -0.62 -1.45 16 5 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 6 C -0.10 -1.11 9.32 -39.59 -0.37 -1.48 16 7 C -0.06 -0.73 4.88 -104.63 -0.51 -1.24 16 8 C 0.14 1.76 2.70 -70.02 -0.19 1.57 16 9 H 0.12 1.45 7.66 -51.93 -0.40 1.05 16 10 N -0.65 -9.87 5.56 -109.20 -0.61 -10.48 16 11 C 0.05 0.93 5.38 -3.83 -0.02 0.91 16 12 C -0.11 -2.24 5.41 -26.73 -0.14 -2.39 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 18 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.45 6.00 7.43 36.01 0.27 6.27 16 23 O -0.51 -8.33 16.06 -18.75 -0.30 -8.63 16 24 O -0.51 -5.25 13.34 -39.24 -0.52 -5.77 16 25 C -0.10 -1.16 8.97 -39.59 -0.36 -1.52 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.12 1.12 8.04 -52.48 -0.42 0.70 16 34 H 0.35 5.41 7.10 -39.29 -0.28 5.13 16 35 H 0.03 0.62 7.62 -51.93 -0.40 0.23 16 36 H 0.07 1.23 8.06 -51.93 -0.42 0.82 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.40 2.53 9.10 45.56 0.41 2.94 16 43 H 0.12 1.46 7.26 -52.49 -0.38 1.08 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -33.61 364.04 -9.04 -42.65 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.06 Total: 3.12 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -2.75 Total: -16.70 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.13 Total: -37.23 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.82 Total: -14.40 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.61 -9.04 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607625169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.461 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds