Wall clock time and date at job start Tue Mar 31 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38236 * 119.99838 * 2 1 4 4 C 1.38237 * 119.99933 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99771 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99824 * 359.97438 * 4 3 2 7 7 C 1.38235 * 120.00362 * 359.97438 * 6 4 3 8 8 C 1.50696 * 120.00112 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.47385 * 19.99513 * 8 7 6 10 10 N 1.46892 * 109.47409 * 139.99685 * 8 7 6 11 11 C 1.46898 * 111.00435 * 204.99746 * 10 8 7 12 12 C 1.52998 * 109.47278 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47104 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47351 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99471 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00129 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00174 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46805 * 89.99756 * 18 16 14 20 20 H 1.48496 * 109.46931 * 209.99694 * 18 16 14 21 21 H 1.48504 * 109.47080 * 330.00122 * 18 16 14 22 22 C 1.50706 * 109.46754 * 259.99762 * 8 7 6 23 23 O 1.20825 * 119.99859 * 239.99451 * 22 8 7 24 24 O 1.34224 * 120.00295 * 60.00410 * 22 8 7 25 25 C 1.38231 * 120.00293 * 180.16434 * 2 1 3 26 26 H 1.08999 * 109.46926 * 90.00151 * 1 2 3 27 27 H 1.09004 * 109.46794 * 209.99959 * 1 2 3 28 28 H 1.08997 * 109.47245 * 329.99686 * 1 2 3 29 29 H 1.08003 * 120.00106 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47504 * 269.97742 * 5 4 3 31 31 H 1.09006 * 109.47160 * 29.97980 * 5 4 3 32 32 H 1.09002 * 109.46895 * 149.97673 * 5 4 3 33 33 H 1.08007 * 119.99686 * 179.97438 * 6 4 3 34 34 H 1.00905 * 111.00068 * 81.04030 * 10 8 7 35 35 H 1.09000 * 109.47370 * 300.00193 * 11 10 8 36 36 H 1.09000 * 109.47186 * 59.99930 * 11 10 8 37 37 H 1.08996 * 109.47380 * 300.00014 * 12 11 10 38 38 H 1.09000 * 109.47354 * 60.00565 * 12 11 10 39 39 H 1.09000 * 109.47577 * 300.00503 * 13 12 11 40 40 H 1.09005 * 109.46854 * 60.00001 * 13 12 11 41 41 H 0.97000 * 120.00064 * 179.97438 * 17 16 14 42 42 H 0.96700 * 117.00196 * 179.97438 * 24 22 8 43 43 H 1.08001 * 120.00145 * 0.06861 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5024 0.0000 6 6 4.2717 0.0001 0.0016 7 6 3.5805 -1.1971 0.0027 8 6 4.3341 -2.5021 0.0044 9 1 5.3519 -2.3336 0.3560 10 7 3.6599 -3.4557 0.8955 11 6 4.6016 -4.4671 1.3936 12 6 3.8645 -5.4396 2.3166 13 6 4.8452 -6.4934 2.8349 14 6 4.1191 -7.4517 3.7435 15 1 3.0636 -7.3222 3.9320 16 6 4.8023 -8.4935 4.3340 17 7 6.0875 -8.6514 4.1041 18 14 3.9023 -9.6810 5.4609 19 1 3.3671 -10.8123 4.6616 20 1 4.8432 -10.2002 6.4856 21 1 2.7812 -8.9742 6.1309 22 6 4.3720 -3.0621 -1.3942 23 8 3.8872 -4.1445 -1.6250 24 8 4.9445 -2.3585 -2.3836 25 6 2.1982 -1.1971 -0.0034 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6581 2.1325 -0.0004 30 1 4.5164 2.8162 -1.0278 31 1 3.7445 3.2625 0.5128 32 1 5.2860 2.3725 0.5146 33 1 5.3517 0.0001 0.0016 34 1 2.8746 -3.8892 0.4335 35 1 5.0253 -5.0149 0.5519 36 1 5.4019 -3.9767 1.9478 37 1 3.4411 -4.8915 3.1583 38 1 3.0640 -5.9301 1.7628 39 1 5.2683 -7.0414 1.9930 40 1 5.6461 -6.0032 3.3886 41 1 6.5682 -9.3842 4.5198 42 1 4.9450 -2.7589 -3.2637 43 1 1.6583 -2.1324 -0.0072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607625169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:18 Heat of formation + Delta-G solvation = -112.962793 kcal Electronic energy + Delta-G solvation = -22621.424992 eV Core-core repulsion = 19243.370597 eV Total energy + Delta-G solvation = -3378.054395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81906 -40.29469 -38.03964 -37.02218 -35.73233 -34.35773 -34.10243 -32.19659 -29.19803 -28.02575 -27.65273 -26.94869 -24.39768 -23.34172 -22.22944 -21.49959 -21.11216 -19.22569 -18.55381 -18.24948 -17.44201 -17.01632 -16.62093 -16.44485 -16.17557 -15.60148 -15.30960 -14.85957 -14.77737 -14.36794 -14.19596 -13.95306 -13.79349 -13.64648 -13.52782 -13.33376 -13.25428 -12.78025 -12.68504 -12.66888 -12.56922 -12.48321 -12.36610 -11.98485 -11.88700 -11.80691 -11.58694 -11.42109 -11.14365 -10.56309 -9.82431 -9.55040 -9.40816 -8.20986 -6.32028 0.34576 0.48876 1.01940 1.39356 1.41101 1.52503 1.98005 2.40370 2.70545 3.08132 3.12139 3.56341 3.79546 3.96587 4.08188 4.18901 4.20466 4.27900 4.32018 4.50553 4.54696 4.64609 4.65976 4.74387 4.83818 4.90933 4.91931 4.96914 5.02678 5.10617 5.19850 5.25885 5.39508 5.43573 5.48324 5.56610 5.64241 5.71599 5.72372 5.80149 5.84202 6.08490 6.13854 6.24728 6.82940 6.84393 7.37077 8.91134 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.003004 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.614627 B = 9319.710275 C = 9766.166636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.088 4.088 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.072 4.072 8 C 0.137 3.863 9 H 0.135 0.865 10 N -0.651 5.651 11 C 0.067 3.933 12 C -0.091 4.091 13 C 0.027 3.973 14 C -0.544 4.544 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.262 1.262 22 C 0.461 3.539 23 O -0.546 6.546 24 O -0.502 6.502 25 C -0.120 4.120 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.142 0.858 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.349 0.651 35 H 0.020 0.980 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.045 0.955 39 H -0.013 1.013 40 H -0.003 1.003 41 H 0.264 0.736 42 H 0.424 0.576 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 24.549 -12.648 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.089 4.089 5 C -0.168 4.168 6 C -0.132 4.132 7 C -0.073 4.073 8 C 0.024 3.976 9 H 0.153 0.847 10 N -0.282 5.282 11 C -0.061 4.061 12 C -0.129 4.129 13 C -0.011 4.011 14 C -0.582 4.582 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.187 1.187 22 C 0.303 3.697 23 O -0.437 6.437 24 O -0.314 6.314 25 C -0.138 4.138 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.160 0.840 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.039 0.961 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.005 0.995 40 H 0.015 0.985 41 H 0.073 0.927 42 H 0.286 0.714 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.992 24.727 -11.738 28.019 hybrid contribution 0.073 -2.147 -0.880 2.322 sum -5.918 22.579 -12.617 26.534 Atomic orbital electron populations 1.20824 0.89745 1.03480 1.02931 1.20145 0.97288 0.92728 0.99131 1.21228 0.93804 0.98021 1.00953 1.20174 0.94100 0.95905 0.98672 1.20824 1.00039 0.92741 1.03157 1.21031 1.00549 0.90928 1.00709 1.19199 0.93649 0.92195 1.02274 1.20359 1.01398 0.92004 0.83800 0.84710 1.60954 1.10436 1.19629 1.37189 1.22009 0.95031 0.92110 0.96999 1.21342 0.98042 0.95512 0.97980 1.18952 0.94463 0.93239 0.94438 1.21688 0.96093 1.12087 1.28301 0.92247 1.26001 0.95716 0.99762 0.98445 1.70096 1.09508 1.32313 1.45496 0.85426 0.78462 0.78691 0.78345 1.19869 1.20518 1.18656 1.24903 0.72916 0.82436 0.89491 1.90749 1.45412 1.23330 1.84206 1.84529 1.72667 1.51684 1.22524 1.20898 0.93610 0.98184 1.01101 0.90432 0.91739 0.90077 0.83991 0.90198 0.90460 0.90896 0.84523 0.83015 0.96149 0.90286 0.92167 0.93643 0.99450 0.98471 0.92730 0.71441 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.24 0.71 -0.97 16 2 C -0.09 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.12 -2.09 9.36 22.27 0.21 -1.88 16 4 C -0.09 -1.52 5.88 -19.87 -0.12 -1.63 16 5 C -0.11 -1.23 10.01 71.24 0.71 -0.51 16 6 C -0.11 -2.24 9.32 22.27 0.21 -2.03 16 7 C -0.07 -1.68 4.88 -19.87 -0.10 -1.78 16 8 C 0.14 3.47 2.70 43.42 0.12 3.58 16 9 H 0.14 3.06 7.66 -2.39 -0.02 3.04 16 10 N -0.65 -19.82 5.56 -499.39 -2.78 -22.60 16 11 C 0.07 2.43 5.38 86.30 0.46 2.89 16 12 C -0.09 -3.96 5.41 30.59 0.17 -3.79 16 13 C 0.03 1.47 4.97 29.85 0.15 1.61 16 14 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 16 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 17 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 18 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 22 C 0.46 12.06 7.43 71.24 0.53 12.59 16 23 O -0.55 -18.16 16.06 21.97 0.35 -17.81 16 24 O -0.50 -9.63 13.34 -51.35 -0.69 -10.32 16 25 C -0.12 -2.81 8.97 22.27 0.20 -2.61 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.01 8.09 -2.38 -0.02 0.99 16 28 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 29 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.68 8.09 -2.38 -0.02 0.66 16 32 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.14 2.22 8.04 -2.91 -0.02 2.19 16 34 H 0.35 11.02 7.10 -89.69 -0.64 10.38 16 35 H 0.02 0.78 7.62 -2.39 -0.02 0.77 16 36 H 0.08 2.73 8.06 -2.39 -0.02 2.71 16 37 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 39 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 41 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.42 4.67 9.10 -74.06 -0.67 4.00 16 43 H 0.11 2.76 7.26 -2.91 -0.02 2.74 16 Total: -1.00 -72.69 364.04 2.73 -69.95 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -0.30 Total: 19.20 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 3.83 Total: -27.96 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.49 Total: -80.47 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.33 Total: -28.12 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -72.69 2.73 -69.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607625169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.008 kcal (2) G-P(sol) polarization free energy of solvation -72.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds