Wall clock time and date at job start Tue Mar 31 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00260 * 2 1 4 4 C 1.38242 * 120.00155 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99652 * 0.25582 * 4 3 2 6 6 C 1.50697 * 119.99851 * 179.72617 * 5 4 3 7 7 C 1.52993 * 109.47245 * 89.99771 * 6 5 4 8 8 C 1.53006 * 109.47286 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47348 * 180.02562 * 8 7 6 10 10 C 1.36942 * 120.00109 * 89.99524 * 9 8 7 11 11 H 1.07996 * 120.00408 * 217.57817 * 10 9 8 12 12 C 1.38817 * 119.99917 * 37.58047 * 10 9 8 13 13 N 1.31623 * 119.99708 * 21.42409 * 12 10 9 14 14 Si 1.86798 * 120.00112 * 201.42574 * 12 10 9 15 15 H 1.48498 * 109.46910 * 90.00004 * 14 12 10 16 16 H 1.48501 * 109.47070 * 209.99711 * 14 12 10 17 17 H 1.48500 * 109.47218 * 330.00082 * 14 12 10 18 18 C 1.46493 * 120.00222 * 269.99896 * 9 8 7 19 19 C 1.53003 * 109.47312 * 95.30859 * 18 9 8 20 20 C 1.50703 * 109.47047 * 180.02562 * 19 18 9 21 21 O 1.20822 * 120.00068 * 359.97438 * 20 19 18 22 22 O 1.34226 * 119.99835 * 179.97438 * 20 19 18 23 23 C 1.38239 * 119.99836 * 359.48894 * 5 4 3 24 24 C 1.38233 * 120.00259 * 0.48714 * 23 5 4 25 25 H 1.09007 * 109.46949 * 90.00393 * 1 2 3 26 26 H 1.09002 * 109.47557 * 209.99879 * 1 2 3 27 27 H 1.09002 * 109.47180 * 330.00688 * 1 2 3 28 28 H 1.07995 * 120.00422 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.99801 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47299 * 210.00104 * 6 5 4 31 31 H 1.09010 * 109.46835 * 329.99746 * 6 5 4 32 32 H 1.09004 * 109.47337 * 299.99851 * 7 6 5 33 33 H 1.08997 * 109.47096 * 60.00457 * 7 6 5 34 34 H 1.09004 * 109.46557 * 300.00018 * 8 7 6 35 35 H 1.08994 * 109.47374 * 59.99795 * 8 7 6 36 36 H 0.97003 * 119.99711 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.47483 * 215.30743 * 18 9 8 38 38 H 1.09006 * 109.47058 * 335.30977 * 18 9 8 39 39 H 1.09005 * 109.47088 * 300.00032 * 19 18 9 40 40 H 1.08989 * 109.47222 * 60.00144 * 19 18 9 41 41 H 0.96700 * 117.00456 * 179.97438 * 22 20 19 42 42 H 1.07999 * 119.99554 * 180.25811 * 23 5 4 43 43 H 1.07995 * 119.99687 * 179.77109 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 -0.0043 6 6 5.7787 -0.0003 -0.0099 7 6 6.2941 -0.0029 1.4306 8 6 7.8241 -0.0023 1.4248 9 7 8.3177 -0.0054 2.8041 10 6 8.5487 -1.1928 3.4460 11 1 8.3189 -1.2925 4.4965 12 6 9.0783 -2.2685 2.7464 13 7 9.7411 -2.0638 1.6278 14 14 8.8503 -4.0063 3.3923 15 1 7.5986 -4.5806 2.8367 16 1 10.0051 -4.8435 2.9790 17 1 8.7659 -3.9764 4.8746 18 6 8.5640 1.2616 3.4969 19 6 7.3364 1.6342 4.3306 20 6 7.5896 2.9380 5.0428 21 8 8.6439 3.5102 4.8986 22 8 6.6438 3.4635 5.8371 23 6 3.5804 -1.1973 0.0011 24 6 2.1981 -1.1973 0.0010 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 1.6583 2.1324 -0.0004 29 1 4.1206 2.1323 0.0001 30 1 6.1401 -0.8893 -0.5268 31 1 6.1401 0.8907 -0.5236 32 1 5.9328 0.8862 1.9474 33 1 5.9327 -0.8938 1.9441 34 1 8.1858 -0.8912 0.9079 35 1 8.1852 0.8887 0.9114 36 1 10.1108 -2.8155 1.1386 37 1 9.4291 1.1557 4.1514 38 1 8.7567 2.0450 2.7638 39 1 6.4712 1.7401 3.6761 40 1 7.1437 0.8509 5.0636 41 1 6.8523 4.3011 6.2730 42 1 4.1204 -2.1326 0.0015 43 1 1.6581 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607774746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:10 Heat of formation + Delta-G solvation = -73.909464 kcal Electronic energy + Delta-G solvation = -22846.817077 eV Core-core repulsion = 19470.456162 eV Total energy + Delta-G solvation = -3376.360915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.86204 -39.31022 -36.49135 -35.76488 -34.28444 -32.07412 -31.44631 -30.76718 -29.50041 -27.27198 -24.95560 -24.32615 -22.55623 -22.17602 -20.72347 -20.08588 -19.95686 -17.78103 -16.79897 -16.11244 -15.77392 -15.61135 -15.43744 -14.91542 -14.72225 -14.00344 -13.82903 -13.64701 -13.29476 -13.20395 -12.95691 -12.76585 -12.62869 -12.27953 -12.12780 -11.94926 -11.30115 -11.27609 -11.20125 -11.01900 -10.94463 -10.85829 -10.62773 -10.54559 -10.34779 -10.20690 -10.00709 -9.74449 -9.51729 -8.77083 -8.52127 -8.26266 -6.63702 -5.82876 -3.42537 1.50333 1.55640 2.57886 3.33866 3.40439 3.42341 3.46240 3.90202 4.45722 4.89587 4.90875 5.11932 5.17727 5.27325 5.29706 5.43054 5.50240 5.60750 5.65200 5.67314 5.72778 5.75098 5.85553 5.93448 6.07818 6.19444 6.21642 6.27937 6.40307 6.44878 6.56653 6.63485 6.69669 6.75171 6.76762 6.79893 6.93212 7.03764 7.18679 7.23542 7.69315 7.78885 8.21868 8.47981 9.15134 9.76000 10.33911 11.17384 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.005021 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.984871 B = 5575.144626 C = 7668.976997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.069 4.069 6 C -0.082 4.082 7 C -0.127 4.127 8 C 0.145 3.855 9 N -0.580 5.580 10 C -0.267 4.267 11 H 0.061 0.939 12 C 0.017 3.983 13 N -0.884 5.884 14 Si 0.896 3.104 15 H -0.285 1.285 16 H -0.291 1.291 17 H -0.277 1.277 18 C 0.160 3.840 19 C -0.134 4.134 20 C 0.479 3.521 21 O -0.522 6.522 22 O -0.526 6.526 23 C -0.114 4.114 24 C -0.119 4.119 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.024 0.976 36 H 0.255 0.745 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.399 0.601 42 H 0.122 0.878 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.469 6.090 -2.069 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.139 4.139 4 C -0.135 4.135 5 C -0.070 4.070 6 C -0.120 4.120 7 C -0.167 4.167 8 C 0.018 3.982 9 N -0.299 5.299 10 C -0.396 4.396 11 H 0.079 0.921 12 C -0.184 4.184 13 N -0.526 5.526 14 Si 0.726 3.274 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.202 1.202 18 C 0.032 3.968 19 C -0.175 4.175 20 C 0.321 3.679 21 O -0.410 6.410 22 O -0.337 6.337 23 C -0.132 4.132 24 C -0.137 4.137 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.257 0.743 42 H 0.140 0.860 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.127 5.732 -2.428 15.437 hybrid contribution -0.108 -0.358 0.669 0.767 sum -14.234 5.374 -1.758 15.316 Atomic orbital electron populations 1.20742 0.91678 1.02425 1.01868 1.19824 0.95710 0.93356 1.01528 1.20954 0.94232 0.97194 1.01502 1.21040 0.93934 0.97768 1.00798 1.20121 0.96591 0.92848 0.97402 1.20662 0.89482 1.02473 0.99367 1.22247 1.00217 1.01062 0.93134 1.21014 0.88925 1.01686 0.86529 1.43783 1.73972 1.00476 1.11643 1.19011 1.37021 0.88465 0.95110 0.92120 1.25167 0.96199 0.99103 0.97891 1.70016 1.34363 1.30219 1.17971 0.86402 0.77400 0.84800 0.78844 1.21214 1.21708 1.20207 1.20638 0.92358 0.89117 0.94709 1.22438 1.05037 0.89825 1.00192 1.24207 0.80665 0.87335 0.75644 1.90676 1.26811 1.62109 1.61453 1.84631 1.47797 1.42056 1.59226 1.21105 0.93955 0.98034 1.00139 1.20984 0.94257 0.97247 1.01255 0.91624 0.91832 0.91862 0.86595 0.86284 0.91104 0.91631 0.93827 0.92106 0.88680 0.95762 0.93469 0.92720 0.93660 0.88568 0.88064 0.74329 0.86033 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 2 C -0.10 -1.25 5.88 -104.62 -0.62 -1.87 16 3 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 4 C -0.12 -1.59 9.70 -39.58 -0.38 -1.98 16 5 C -0.07 -1.03 5.13 -104.62 -0.54 -1.57 16 6 C -0.08 -1.30 5.34 -27.89 -0.15 -1.45 16 7 C -0.13 -2.36 5.52 -26.73 -0.15 -2.51 16 8 C 0.14 3.19 5.33 -4.04 -0.02 3.17 16 9 N -0.58 -13.78 2.43 -173.24 -0.42 -14.20 16 10 C -0.27 -6.98 9.45 -15.06 -0.14 -7.12 16 11 H 0.06 1.58 7.92 -52.49 -0.42 1.17 16 12 C 0.02 0.46 4.95 -17.43 -0.09 0.37 16 13 N -0.88 -24.67 11.47 55.49 0.64 -24.03 16 14 Si 0.90 20.97 29.60 -169.99 -5.03 15.94 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.16 3.36 5.01 -4.04 -0.02 3.34 16 19 C -0.13 -2.34 6.11 -27.88 -0.17 -2.51 16 20 C 0.48 7.84 8.33 36.01 0.30 8.14 16 21 O -0.52 -9.98 16.74 -18.75 -0.31 -10.30 16 22 O -0.53 -6.85 13.42 -39.25 -0.53 -7.37 16 23 C -0.11 -1.64 9.70 -39.58 -0.38 -2.03 16 24 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 31 H 0.07 0.97 8.09 -51.92 -0.42 0.55 16 32 H 0.04 0.78 6.64 -51.93 -0.34 0.43 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.10 2.39 5.52 -51.93 -0.29 2.11 16 35 H 0.02 0.51 7.86 -51.93 -0.41 0.11 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.05 1.24 8.04 -51.93 -0.42 0.82 16 38 H 0.04 0.94 7.79 -51.93 -0.40 0.53 16 39 H 0.10 1.60 6.64 -51.93 -0.34 1.25 16 40 H 0.10 1.78 8.14 -51.94 -0.42 1.36 16 41 H 0.40 3.32 9.10 45.56 0.41 3.73 16 42 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -30.39 361.70 -8.95 -39.34 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.98 Total: 5.60 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.77 Total: -10.42 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.21 Total: -38.23 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.84 Total: -17.67 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.39 -8.95 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607774746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.570 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds