Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00260 * 2 1 4 4 C 1.38242 * 120.00155 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99652 * 0.25582 * 4 3 2 6 6 C 1.50697 * 119.99851 * 179.72617 * 5 4 3 7 7 C 1.52993 * 109.47245 * 89.99771 * 6 5 4 8 8 C 1.53006 * 109.47286 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47348 * 180.02562 * 8 7 6 10 10 C 1.36942 * 120.00109 * 89.99524 * 9 8 7 11 11 H 1.07996 * 120.00408 * 217.57817 * 10 9 8 12 12 C 1.38817 * 119.99917 * 37.58047 * 10 9 8 13 13 N 1.31623 * 119.99708 * 21.42409 * 12 10 9 14 14 Si 1.86798 * 120.00112 * 201.42574 * 12 10 9 15 15 H 1.48498 * 109.46910 * 90.00004 * 14 12 10 16 16 H 1.48501 * 109.47070 * 209.99711 * 14 12 10 17 17 H 1.48500 * 109.47218 * 330.00082 * 14 12 10 18 18 C 1.46493 * 120.00222 * 269.99896 * 9 8 7 19 19 C 1.53003 * 109.47312 * 95.30859 * 18 9 8 20 20 C 1.50703 * 109.47047 * 180.02562 * 19 18 9 21 21 O 1.20822 * 120.00068 * 359.97438 * 20 19 18 22 22 O 1.34226 * 119.99835 * 179.97438 * 20 19 18 23 23 C 1.38239 * 119.99836 * 359.48894 * 5 4 3 24 24 C 1.38233 * 120.00259 * 0.48714 * 23 5 4 25 25 H 1.09007 * 109.46949 * 90.00393 * 1 2 3 26 26 H 1.09002 * 109.47557 * 209.99879 * 1 2 3 27 27 H 1.09002 * 109.47180 * 330.00688 * 1 2 3 28 28 H 1.07995 * 120.00422 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.99801 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47299 * 210.00104 * 6 5 4 31 31 H 1.09010 * 109.46835 * 329.99746 * 6 5 4 32 32 H 1.09004 * 109.47337 * 299.99851 * 7 6 5 33 33 H 1.08997 * 109.47096 * 60.00457 * 7 6 5 34 34 H 1.09004 * 109.46557 * 300.00018 * 8 7 6 35 35 H 1.08994 * 109.47374 * 59.99795 * 8 7 6 36 36 H 0.97003 * 119.99711 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.47483 * 215.30743 * 18 9 8 38 38 H 1.09006 * 109.47058 * 335.30977 * 18 9 8 39 39 H 1.09005 * 109.47088 * 300.00032 * 19 18 9 40 40 H 1.08989 * 109.47222 * 60.00144 * 19 18 9 41 41 H 0.96700 * 117.00456 * 179.97438 * 22 20 19 42 42 H 1.07999 * 119.99554 * 180.25811 * 23 5 4 43 43 H 1.07995 * 119.99687 * 179.77109 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 -0.0043 6 6 5.7787 -0.0003 -0.0099 7 6 6.2941 -0.0029 1.4306 8 6 7.8241 -0.0023 1.4248 9 7 8.3177 -0.0054 2.8041 10 6 8.5487 -1.1928 3.4460 11 1 8.3189 -1.2925 4.4965 12 6 9.0783 -2.2685 2.7464 13 7 9.7411 -2.0638 1.6278 14 14 8.8503 -4.0063 3.3923 15 1 7.5986 -4.5806 2.8367 16 1 10.0051 -4.8435 2.9790 17 1 8.7659 -3.9764 4.8746 18 6 8.5640 1.2616 3.4969 19 6 7.3364 1.6342 4.3306 20 6 7.5896 2.9380 5.0428 21 8 8.6439 3.5102 4.8986 22 8 6.6438 3.4635 5.8371 23 6 3.5804 -1.1973 0.0011 24 6 2.1981 -1.1973 0.0010 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 1.6583 2.1324 -0.0004 29 1 4.1206 2.1323 0.0001 30 1 6.1401 -0.8893 -0.5268 31 1 6.1401 0.8907 -0.5236 32 1 5.9328 0.8862 1.9474 33 1 5.9327 -0.8938 1.9441 34 1 8.1858 -0.8912 0.9079 35 1 8.1852 0.8887 0.9114 36 1 10.1108 -2.8155 1.1386 37 1 9.4291 1.1557 4.1514 38 1 8.7567 2.0450 2.7638 39 1 6.4712 1.7401 3.6761 40 1 7.1437 0.8509 5.0636 41 1 6.8523 4.3011 6.2730 42 1 4.1204 -2.1326 0.0015 43 1 1.6581 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607774746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -89.407397 kcal Electronic energy + Delta-G solvation = -22847.489118 eV Core-core repulsion = 19470.456162 eV Total energy + Delta-G solvation = -3377.032956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17787 -40.32290 -38.16065 -37.03868 -35.53661 -33.93877 -32.73076 -31.75394 -31.06342 -28.53892 -26.74940 -25.61319 -23.61592 -23.54749 -22.11273 -21.59879 -21.27392 -19.10103 -18.59299 -17.52282 -17.02774 -16.84069 -16.66184 -16.44945 -15.92137 -15.63692 -15.31492 -14.78070 -14.60477 -14.40027 -14.20986 -14.09860 -13.95910 -13.44458 -13.39466 -13.07388 -13.01404 -12.74934 -12.52973 -12.50221 -12.39640 -12.25822 -12.22008 -12.00518 -11.74872 -11.66519 -11.59419 -11.44188 -11.19644 -10.50844 -9.77275 -9.30068 -8.58141 -7.82518 -5.46646 0.49076 0.55361 1.26404 1.46901 1.49514 1.56991 2.19189 2.53820 2.88752 3.24889 3.70782 3.95658 3.98040 4.12742 4.16907 4.20068 4.21307 4.29537 4.55508 4.57335 4.66487 4.68370 4.76889 4.82625 4.84080 4.88185 4.93064 5.01679 5.05785 5.14460 5.21019 5.27182 5.35555 5.38164 5.54145 5.59252 5.65192 5.69923 5.75157 5.85435 5.89322 6.20668 6.47494 7.06652 7.18017 7.83803 8.37233 9.13932 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.005021 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.984871 B = 5575.144626 C = 7668.976997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.125 4.125 4 C -0.124 4.124 5 C -0.091 4.091 6 C -0.073 4.073 7 C -0.106 4.106 8 C 0.147 3.853 9 N -0.596 5.596 10 C -0.271 4.271 11 H 0.059 0.941 12 C -0.030 4.030 13 N -0.916 5.916 14 Si 0.954 3.046 15 H -0.284 1.284 16 H -0.295 1.295 17 H -0.269 1.269 18 C 0.162 3.838 19 C -0.122 4.122 20 C 0.493 3.507 21 O -0.553 6.553 22 O -0.512 6.512 23 C -0.132 4.132 24 C -0.128 4.128 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.142 0.858 29 H 0.130 0.870 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.026 0.974 36 H 0.252 0.748 37 H 0.031 0.969 38 H 0.044 0.956 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.424 0.576 42 H 0.114 0.886 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.203 7.077 -1.458 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.091 4.091 6 C -0.111 4.111 7 C -0.146 4.146 8 C 0.022 3.978 9 N -0.316 5.316 10 C -0.401 4.401 11 H 0.077 0.923 12 C -0.227 4.227 13 N -0.559 5.559 14 Si 0.782 3.218 15 H -0.210 1.210 16 H -0.222 1.222 17 H -0.194 1.194 18 C 0.035 3.965 19 C -0.163 4.163 20 C 0.336 3.664 21 O -0.444 6.444 22 O -0.326 6.326 23 C -0.150 4.150 24 C -0.146 4.146 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.160 0.840 29 H 0.148 0.852 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.286 0.714 42 H 0.132 0.868 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.896 6.754 -1.785 18.283 hybrid contribution 0.687 -0.566 0.511 1.027 sum -16.208 6.188 -1.274 17.396 Atomic orbital electron populations 1.20803 0.89251 1.03515 1.03007 1.20254 0.97552 0.92870 0.99749 1.21295 0.93839 0.98501 1.00601 1.21233 0.94813 0.97583 1.00571 1.20036 0.95639 0.93817 0.99569 1.20506 0.90804 1.02438 0.97331 1.21935 0.97365 1.00350 0.94959 1.20928 0.91172 1.00190 0.85549 1.43974 1.74663 1.00754 1.12202 1.19240 1.36075 0.89553 0.95233 0.92310 1.25817 0.96361 1.02222 0.98344 1.70139 1.35752 1.30777 1.19241 0.85487 0.76910 0.80787 0.78605 1.21020 1.22169 1.19351 1.20563 0.93328 0.88045 0.94528 1.22047 1.03291 0.90836 1.00088 1.23701 0.80412 0.86685 0.75553 1.90683 1.28147 1.62904 1.62691 1.84539 1.46166 1.43510 1.58343 1.21208 0.95011 0.97741 1.01078 1.21243 0.93667 0.98662 1.00979 0.90338 0.91017 0.90577 0.84048 0.85180 0.92302 0.90538 0.92707 0.94369 0.91863 0.95509 0.93881 0.95053 0.93714 0.87244 0.88024 0.71417 0.86777 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.24 0.71 -0.86 16 2 C -0.10 -2.24 5.88 -19.87 -0.12 -2.35 16 3 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 4 C -0.12 -3.15 9.70 22.27 0.22 -2.93 16 5 C -0.09 -2.65 5.13 -19.86 -0.10 -2.75 16 6 C -0.07 -2.33 5.34 29.84 0.16 -2.17 16 7 C -0.11 -3.99 5.52 30.59 0.17 -3.83 16 8 C 0.15 6.67 5.33 86.38 0.46 7.13 16 9 N -0.60 -28.86 2.43 -702.01 -1.71 -30.57 16 10 C -0.27 -14.43 9.45 84.03 0.79 -13.64 16 11 H 0.06 3.10 7.92 -2.91 -0.02 3.07 16 12 C -0.03 -1.61 4.95 84.86 0.42 -1.19 16 13 N -0.92 -52.72 11.47 21.65 0.25 -52.47 16 14 Si 0.95 43.82 29.60 68.60 2.03 45.85 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 16 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 C 0.16 6.89 5.01 86.38 0.43 7.32 16 19 C -0.12 -4.14 6.11 29.85 0.18 -3.96 16 20 C 0.49 15.24 8.33 71.24 0.59 15.84 16 21 O -0.55 -20.57 16.74 21.98 0.37 -20.20 16 22 O -0.51 -11.74 13.42 -51.38 -0.69 -12.43 16 23 C -0.13 -3.78 9.70 22.27 0.22 -3.56 16 24 C -0.13 -3.07 9.70 22.27 0.22 -2.86 16 25 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 27 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 28 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 30 H 0.06 1.99 8.09 -2.39 -0.02 1.97 16 31 H 0.08 2.24 8.09 -2.38 -0.02 2.22 16 32 H 0.05 1.91 6.64 -2.39 -0.02 1.89 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 3.32 5.52 -2.39 -0.01 3.31 16 35 H 0.03 1.16 7.86 -2.39 -0.02 1.14 16 36 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 37 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 38 H 0.04 1.87 7.79 -2.38 -0.02 1.86 16 39 H 0.11 3.43 6.64 -2.38 -0.02 3.41 16 40 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.42 5.57 9.10 -74.06 -0.67 4.90 16 42 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -66.19 361.70 5.14 -61.05 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.32 Total: 21.08 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.57 Total: -12.32 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -1.46 Total: -83.04 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.32 Total: -32.63 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -66.19 5.14 -61.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607774746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.354 kcal (2) G-P(sol) polarization free energy of solvation -66.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds