Wall clock time and date at job start Tue Mar 31 2020 06:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47082 * 119.99994 * 2 1 3 5 5 C 1.38158 * 120.02768 * 299.99975 * 4 2 1 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 119.96036 * 4 2 1 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 2 11 11 C 1.42894 * 116.99956 * 179.97438 * 10 9 4 12 12 C 1.50700 * 109.47317 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99569 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00545 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99721 * 0.02562 * 14 12 11 16 16 C 1.46500 * 120.00479 * 180.02562 * 14 12 11 17 17 C 1.50702 * 109.47134 * 89.99977 * 16 14 12 18 18 H 1.07999 * 119.99487 * 0.02562 * 17 16 14 19 19 C 1.37875 * 119.99797 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99761 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00315 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47127 * 89.99657 * 21 19 17 23 23 H 1.48497 * 109.47162 * 210.00047 * 21 19 17 24 24 H 1.48503 * 109.47041 * 330.00011 * 21 19 17 25 25 H 1.08997 * 109.47545 * 300.00024 * 1 2 3 26 26 H 1.09005 * 109.47244 * 59.99753 * 1 2 3 27 27 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46781 * 240.00259 * 2 1 3 29 29 H 1.08997 * 109.47487 * 59.99935 * 3 2 1 30 30 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47362 * 300.00175 * 3 2 1 32 32 H 1.08004 * 119.97750 * 359.97438 * 5 4 2 33 33 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 34 34 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 36 36 H 1.09003 * 109.47345 * 299.99594 * 11 10 9 37 37 H 1.09003 * 109.47704 * 59.99947 * 11 10 9 38 38 H 1.09000 * 109.47301 * 89.99528 * 15 14 12 39 39 H 1.09002 * 109.47102 * 209.99638 * 15 14 12 40 40 H 1.09004 * 109.47067 * 329.99780 * 15 14 12 41 41 H 1.08994 * 109.47216 * 210.00412 * 16 14 12 42 42 H 1.09000 * 109.46787 * 330.00466 * 16 14 12 43 43 H 0.96997 * 119.99839 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4856 6 6 2.1599 -0.8899 3.6147 7 6 2.9550 -2.0144 3.4912 8 6 3.2903 -2.4904 2.2387 9 6 2.8292 -1.8387 1.1038 10 8 3.1585 -2.3045 -0.1297 11 6 3.9826 -3.4705 -0.1841 12 6 4.2408 -3.8366 -1.6230 13 8 3.7661 -3.1647 -2.5142 14 7 5.0000 -4.9100 -1.9196 15 6 5.5738 -5.7212 -0.8431 16 6 5.2514 -5.2655 -3.3184 17 6 6.4976 -4.5670 -3.7980 18 1 7.0475 -3.9230 -3.1278 19 6 6.9356 -4.7501 -5.0925 20 7 8.0234 -4.1408 -5.5110 21 14 5.9839 -5.8634 -6.2519 22 1 4.9603 -5.0664 -6.9746 23 1 6.9189 -6.4731 -7.2313 24 1 5.3160 -6.9358 -5.4714 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.0783 0.6395 2.5847 33 1 1.8985 -0.5195 4.5950 34 1 3.3136 -2.5214 4.3748 35 1 3.9149 -3.3662 2.1426 36 1 4.9303 -3.2694 0.3156 37 1 3.4767 -4.2968 0.3154 38 1 4.8771 -6.5158 -0.5760 39 1 6.5132 -6.1597 -1.1798 40 1 5.7580 -5.0918 0.0275 41 1 5.3848 -6.3441 -3.4007 42 1 4.4035 -4.9566 -3.9297 43 1 8.3313 -4.2694 -6.4217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034651663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:33 Heat of formation + Delta-G solvation = -51.245218 kcal Electronic energy + Delta-G solvation = -23149.532072 eV Core-core repulsion = 19774.153952 eV Total energy + Delta-G solvation = -3375.378120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50385 -39.08019 -37.34786 -35.37799 -34.98493 -32.60628 -30.34341 -30.14253 -29.05798 -27.38741 -27.12558 -25.87270 -23.64502 -22.64867 -21.80192 -20.14879 -18.68644 -18.20667 -17.03497 -16.58240 -16.15483 -16.09996 -15.51247 -15.24620 -14.53581 -14.48674 -14.09878 -13.93395 -13.80633 -13.40071 -13.15962 -12.66030 -12.52487 -12.40852 -12.33749 -12.13648 -12.06027 -11.99381 -11.74483 -11.52951 -11.16152 -11.11176 -10.89972 -10.61883 -10.56712 -10.54905 -10.18135 -9.58109 -9.10370 -8.92738 -8.61565 -8.16288 -7.81923 -6.11306 -4.10886 1.23087 1.37749 2.86573 3.17031 3.27937 3.33742 3.35910 3.67262 3.98486 4.37278 4.56799 4.68309 4.81487 4.94096 4.99058 5.08943 5.14279 5.18030 5.22308 5.23561 5.30076 5.46930 5.48285 5.56827 5.60964 5.73643 5.79185 5.81513 5.96889 6.05165 6.05979 6.16186 6.26642 6.30475 6.41951 6.56225 6.59866 6.71321 6.87478 7.19841 7.40014 7.56391 8.08735 8.42503 8.81636 8.92046 9.48114 11.01999 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021746 B = 0.003594 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.295222 B = 7788.075583 C = 8497.335950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.104 4.104 5 C -0.079 4.079 6 C -0.161 4.161 7 C -0.085 4.085 8 C -0.210 4.210 9 C 0.135 3.865 10 O -0.284 6.284 11 C 0.043 3.957 12 C 0.509 3.491 13 O -0.516 6.516 14 N -0.594 5.594 15 C 0.079 3.921 16 C 0.217 3.783 17 C -0.532 4.532 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.266 1.266 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.100 3.366 18.974 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.198 4.198 4 C -0.104 4.104 5 C -0.097 4.097 6 C -0.180 4.180 7 C -0.103 4.103 8 C -0.229 4.229 9 C 0.089 3.911 10 O -0.196 6.196 11 C -0.035 4.035 12 C 0.294 3.706 13 O -0.391 6.391 14 N -0.328 5.328 15 C -0.065 4.065 16 C 0.097 3.903 17 C -0.571 4.571 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.190 1.190 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.278 3.811 18.108 22.208 hybrid contribution -0.002 -0.821 -0.356 0.895 sum -12.280 2.990 17.753 21.792 Atomic orbital electron populations 1.21826 0.94568 1.01829 1.01466 1.20031 0.95573 0.95861 0.96175 1.21829 1.01413 0.95087 1.01441 1.19252 1.00209 0.95230 0.95733 1.20804 0.98707 0.99187 0.91017 1.20991 1.01142 0.97427 0.98408 1.20888 0.96966 0.95963 0.96533 1.21266 1.05982 1.03084 0.92551 1.18950 0.94666 0.93488 0.83976 1.86174 1.65405 1.42923 1.25099 1.22628 0.95455 0.87765 0.97676 1.19726 0.80155 0.81567 0.89196 1.90720 1.50148 1.49881 1.48337 1.47749 1.49053 1.27147 1.08881 1.21737 0.99642 0.95069 0.90019 1.19710 0.97845 0.95803 0.76905 1.21316 1.08383 1.29134 0.98247 0.90716 1.24857 0.94812 0.95589 0.97709 1.69897 1.22901 1.42914 1.17706 0.86842 0.80170 0.81313 0.81311 1.19816 1.21004 1.19048 0.92907 0.92388 0.92676 0.88859 0.92923 0.92516 0.92363 0.85634 0.86174 0.85994 0.85458 0.89394 0.89670 0.93283 0.90049 0.92337 0.94882 0.94383 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.01 37.16 0.33 -1.15 16 2 C -0.06 -0.74 3.06 -91.77 -0.28 -1.02 16 3 C -0.14 -1.56 9.01 37.16 0.33 -1.22 16 4 C -0.10 -1.34 4.79 -104.48 -0.50 -1.84 16 5 C -0.08 -0.84 8.71 -39.61 -0.34 -1.18 16 6 C -0.16 -1.56 10.04 -39.56 -0.40 -1.96 16 7 C -0.09 -0.85 10.04 -39.61 -0.40 -1.25 16 8 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 9 C 0.14 1.91 6.66 -39.21 -0.26 1.65 16 10 O -0.28 -4.79 8.44 -39.34 -0.33 -5.13 16 11 C 0.04 0.66 3.77 36.01 0.14 0.80 16 12 C 0.51 10.52 7.75 -10.99 -0.09 10.43 16 13 O -0.52 -13.17 16.08 -14.36 -0.23 -13.40 16 14 N -0.59 -12.03 2.86 -182.95 -0.52 -12.55 16 15 C 0.08 1.13 10.24 59.85 0.61 1.75 16 16 C 0.22 5.28 4.23 -5.19 -0.02 5.25 16 17 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 18 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 20 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 21 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 25 H 0.05 0.47 7.39 -51.93 -0.38 0.09 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.47 6.99 -51.93 -0.36 1.10 16 29 H 0.05 0.49 7.39 -51.93 -0.38 0.11 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.13 1.07 7.10 -52.48 -0.37 0.69 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.25 6.30 -52.49 -0.33 0.92 16 36 H 0.09 1.16 6.92 -51.93 -0.36 0.80 16 37 H 0.09 1.02 7.63 -51.93 -0.40 0.62 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.21 8.07 -51.93 -0.42 0.80 16 40 H 0.06 0.67 6.44 -51.93 -0.33 0.33 16 41 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 42 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -34.90 352.72 -7.95 -42.85 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.62 Total: -0.91 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.67 Total: -6.14 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.25 Total: -39.39 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.56 Total: -18.53 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.90 -7.95 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.391 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds