Wall clock time and date at job start Tue Mar 31 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47082 * 119.99994 * 2 1 3 5 5 C 1.38158 * 120.02768 * 299.99975 * 4 2 1 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 119.96036 * 4 2 1 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 2 11 11 C 1.42894 * 116.99956 * 179.97438 * 10 9 4 12 12 C 1.50700 * 109.47317 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99569 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00545 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99721 * 0.02562 * 14 12 11 16 16 C 1.46500 * 120.00479 * 180.02562 * 14 12 11 17 17 C 1.50702 * 109.47134 * 89.99977 * 16 14 12 18 18 H 1.07999 * 119.99487 * 0.02562 * 17 16 14 19 19 C 1.37875 * 119.99797 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99761 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00315 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47127 * 89.99657 * 21 19 17 23 23 H 1.48497 * 109.47162 * 210.00047 * 21 19 17 24 24 H 1.48503 * 109.47041 * 330.00011 * 21 19 17 25 25 H 1.08997 * 109.47545 * 300.00024 * 1 2 3 26 26 H 1.09005 * 109.47244 * 59.99753 * 1 2 3 27 27 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46781 * 240.00259 * 2 1 3 29 29 H 1.08997 * 109.47487 * 59.99935 * 3 2 1 30 30 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47362 * 300.00175 * 3 2 1 32 32 H 1.08004 * 119.97750 * 359.97438 * 5 4 2 33 33 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 34 34 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 36 36 H 1.09003 * 109.47345 * 299.99594 * 11 10 9 37 37 H 1.09003 * 109.47704 * 59.99947 * 11 10 9 38 38 H 1.09000 * 109.47301 * 89.99528 * 15 14 12 39 39 H 1.09002 * 109.47102 * 209.99638 * 15 14 12 40 40 H 1.09004 * 109.47067 * 329.99780 * 15 14 12 41 41 H 1.08994 * 109.47216 * 210.00412 * 16 14 12 42 42 H 1.09000 * 109.46787 * 330.00466 * 16 14 12 43 43 H 0.96997 * 119.99839 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4856 6 6 2.1599 -0.8899 3.6147 7 6 2.9550 -2.0144 3.4912 8 6 3.2903 -2.4904 2.2387 9 6 2.8292 -1.8387 1.1038 10 8 3.1585 -2.3045 -0.1297 11 6 3.9826 -3.4705 -0.1841 12 6 4.2408 -3.8366 -1.6230 13 8 3.7661 -3.1647 -2.5142 14 7 5.0000 -4.9100 -1.9196 15 6 5.5738 -5.7212 -0.8431 16 6 5.2514 -5.2655 -3.3184 17 6 6.4976 -4.5670 -3.7980 18 1 7.0475 -3.9230 -3.1278 19 6 6.9356 -4.7501 -5.0925 20 7 8.0234 -4.1408 -5.5110 21 14 5.9839 -5.8634 -6.2519 22 1 4.9603 -5.0664 -6.9746 23 1 6.9189 -6.4731 -7.2313 24 1 5.3160 -6.9358 -5.4714 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.0783 0.6395 2.5847 33 1 1.8985 -0.5195 4.5950 34 1 3.3136 -2.5214 4.3748 35 1 3.9149 -3.3662 2.1426 36 1 4.9303 -3.2694 0.3156 37 1 3.4767 -4.2968 0.3154 38 1 4.8771 -6.5158 -0.5760 39 1 6.5132 -6.1597 -1.1798 40 1 5.7580 -5.0918 0.0275 41 1 5.3848 -6.3441 -3.4007 42 1 4.4035 -4.9566 -3.9297 43 1 8.3313 -4.2694 -6.4217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034651663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:32 Heat of formation + Delta-G solvation = -72.920953 kcal Electronic energy + Delta-G solvation = -23150.472003 eV Core-core repulsion = 19774.153952 eV Total energy + Delta-G solvation = -3376.318050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55991 -40.51349 -38.44907 -36.70103 -36.24411 -34.75246 -31.64499 -31.02115 -30.43870 -28.73773 -28.00394 -27.33551 -24.76297 -24.12435 -22.93634 -21.11574 -20.17896 -19.23048 -19.19083 -17.89100 -17.42612 -17.39304 -16.77244 -16.41021 -16.17963 -15.58467 -15.32228 -15.04828 -14.79333 -14.65925 -14.41463 -14.26676 -13.87649 -13.72365 -13.61101 -13.31395 -13.24518 -12.98796 -12.88943 -12.81066 -12.53995 -12.45782 -12.14509 -12.05729 -11.97587 -11.77098 -11.53190 -11.46246 -10.85813 -10.75614 -9.73770 -9.50289 -9.07587 -8.36474 -6.42434 0.42111 0.52375 1.31259 1.36442 1.44198 1.56116 1.68768 2.29352 2.67431 2.85155 2.97983 3.47203 3.71159 3.87596 3.91100 4.04207 4.15898 4.26821 4.31240 4.34801 4.36471 4.53310 4.59044 4.63138 4.73037 4.78104 4.79104 4.89550 4.90156 4.94110 4.95163 5.12339 5.21157 5.29674 5.37125 5.41821 5.48788 5.50898 5.61742 5.65887 5.90363 6.19077 6.40087 6.56988 6.59127 7.15624 7.28725 8.80558 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021746 B = 0.003594 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.295222 B = 7788.075583 C = 8497.335950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.081 4.081 6 C -0.156 4.156 7 C -0.087 4.087 8 C -0.214 4.214 9 C 0.099 3.901 10 O -0.321 6.321 11 C 0.057 3.943 12 C 0.496 3.504 13 O -0.582 6.582 14 N -0.600 5.600 15 C 0.070 3.930 16 C 0.224 3.776 17 C -0.541 4.541 18 H 0.028 0.972 19 C 0.011 3.989 20 N -0.945 5.945 21 Si 0.949 3.051 22 H -0.278 1.278 23 H -0.273 1.273 24 H -0.234 1.234 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.018 0.982 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 2.042 22.106 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.079 4.079 3 C -0.193 4.193 4 C -0.124 4.124 5 C -0.099 4.099 6 C -0.174 4.174 7 C -0.104 4.104 8 C -0.232 4.232 9 C 0.054 3.946 10 O -0.234 6.234 11 C -0.021 4.021 12 C 0.284 3.716 13 O -0.462 6.462 14 N -0.333 5.333 15 C -0.072 4.072 16 C 0.102 3.898 17 C -0.579 4.579 18 H 0.046 0.954 19 C -0.188 4.188 20 N -0.585 5.585 21 Si 0.772 3.228 22 H -0.204 1.204 23 H -0.198 1.198 24 H -0.157 1.157 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.036 0.964 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.767 2.451 21.314 25.491 hybrid contribution 0.508 -0.314 -1.199 1.340 sum -13.258 2.137 20.115 24.186 Atomic orbital electron populations 1.21782 0.93007 1.01517 1.02781 1.19971 0.96903 0.96216 0.94789 1.21799 1.00240 0.94478 1.02810 1.19464 1.00835 0.95469 0.96594 1.21073 0.98744 0.99852 0.90231 1.21426 0.99777 0.96768 0.99394 1.21302 0.96327 0.95987 0.96820 1.21528 1.05870 1.03453 0.92359 1.19296 0.96669 0.94929 0.83694 1.86129 1.66223 1.43707 1.27348 1.22550 0.97061 0.88998 0.93490 1.20777 0.78992 0.80615 0.91258 1.90677 1.52761 1.51939 1.50777 1.47851 1.48931 1.27803 1.08690 1.22120 0.99936 0.95986 0.89113 1.19395 0.94615 0.96380 0.79415 1.21565 1.09644 1.28716 0.98012 0.95361 1.25879 0.95782 0.97407 0.99689 1.70052 1.24957 1.44976 1.18496 0.85698 0.78547 0.79710 0.78891 1.20420 1.19819 1.15719 0.90517 0.92065 0.93781 0.93340 0.90423 0.94295 0.92053 0.83481 0.83104 0.82960 0.83712 0.87166 0.85726 0.89417 0.90917 0.89097 0.92301 0.96422 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.01 71.98 0.65 -2.17 16 2 C -0.06 -1.59 3.06 -11.54 -0.04 -1.62 16 3 C -0.14 -3.05 9.01 71.98 0.65 -2.40 16 4 C -0.12 -3.13 4.79 -19.77 -0.09 -3.22 16 5 C -0.08 -1.51 8.71 22.25 0.19 -1.32 16 6 C -0.16 -2.42 10.04 22.28 0.22 -2.20 16 7 C -0.09 -1.40 10.04 22.25 0.22 -1.18 16 8 C -0.21 -4.46 9.04 22.37 0.20 -4.26 16 9 C 0.10 2.77 6.66 22.51 0.15 2.92 16 10 O -0.32 -11.17 8.44 -73.40 -0.62 -11.79 16 11 C 0.06 1.68 3.77 71.24 0.27 1.95 16 12 C 0.50 20.96 7.75 87.66 0.68 21.64 16 13 O -0.58 -31.54 16.08 15.98 0.26 -31.29 16 14 N -0.60 -24.16 2.86 -851.12 -2.43 -26.59 16 15 C 0.07 1.83 10.24 127.77 1.31 3.14 16 16 C 0.22 10.94 4.23 85.63 0.36 11.31 16 17 C -0.54 -32.19 9.94 25.60 0.25 -31.94 16 18 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 19 C 0.01 0.63 5.47 84.65 0.46 1.09 16 20 N -0.94 -60.36 13.96 21.45 0.30 -60.06 16 21 Si 0.95 44.67 27.47 68.60 1.88 46.55 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.23 -9.75 6.54 99.48 0.65 -9.10 16 25 H 0.08 1.22 7.39 -2.39 -0.02 1.21 16 26 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.69 6.99 -2.38 -0.02 1.67 16 29 H 0.08 1.32 7.39 -2.39 -0.02 1.30 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.15 2.00 7.10 -2.91 -0.02 1.98 16 33 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.15 2.35 6.30 -2.91 -0.02 2.33 16 36 H 0.11 2.70 6.92 -2.39 -0.02 2.69 16 37 H 0.13 2.63 7.63 -2.39 -0.02 2.61 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 40 H 0.09 1.78 6.44 -2.38 -0.02 1.76 16 41 H 0.06 2.57 7.13 -2.39 -0.02 2.55 16 42 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 43 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -83.50 352.72 5.82 -77.68 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.93 Total: 13.76 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 5.50 Total: -8.27 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -2.13 Total: -86.64 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.36 Total: -43.08 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -83.50 5.82 -77.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.756 kcal (2) G-P(sol) polarization free energy of solvation -83.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds