Wall clock time and date at job start Tue Mar 31 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46836 * 2 1 4 4 C 1.53000 * 109.47371 * 240.00108 * 2 1 3 5 5 C 1.50702 * 109.47325 * 119.99561 * 2 1 3 6 6 C 1.32994 * 119.99736 * 0.02562 * 5 2 1 7 7 C 1.47107 * 119.99517 * 179.97438 * 6 5 2 8 8 O 1.21613 * 120.00270 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99707 * 179.72624 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27735 * 9 7 6 11 11 C 1.50697 * 109.47340 * 89.99486 * 10 9 7 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99650 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99850 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47026 * 60.00300 * 15 13 11 17 17 H 1.48505 * 109.47030 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47297 * 299.99976 * 15 13 11 19 19 C 1.46506 * 119.99880 * 0.26986 * 9 7 6 20 20 C 1.50699 * 109.46706 * 90.00613 * 19 9 7 21 21 C 1.34516 * 125.79161 * 89.71781 * 20 19 9 22 22 C 1.41378 * 106.84066 * 179.88490 * 21 20 19 23 23 C 1.34518 * 106.84080 * 0.37180 * 22 21 20 24 24 O 1.34298 * 108.42272 * 359.77008 * 23 22 21 25 25 H 1.09006 * 109.47216 * 299.99672 * 1 2 3 26 26 H 1.08994 * 109.47395 * 60.00163 * 1 2 3 27 27 H 1.09007 * 109.46593 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47126 * 299.99847 * 3 2 1 30 30 H 1.09001 * 109.47339 * 59.99925 * 3 2 1 31 31 H 1.08998 * 109.46763 * 299.99467 * 4 2 1 32 32 H 1.08994 * 109.47083 * 59.99538 * 4 2 1 33 33 H 1.08996 * 109.47041 * 179.97438 * 4 2 1 34 34 H 1.08001 * 119.99767 * 179.97438 * 5 2 1 35 35 H 1.07991 * 120.00489 * 359.97438 * 6 5 2 36 36 H 1.08994 * 109.47013 * 209.99592 * 10 9 7 37 37 H 1.09005 * 109.46881 * 329.99727 * 10 9 7 38 38 H 0.97004 * 119.99666 * 180.02562 * 14 13 11 39 39 H 1.08997 * 109.47351 * 210.00205 * 19 9 7 40 40 H 1.09001 * 109.47111 * 330.00312 * 19 9 7 41 41 H 1.07998 * 126.57862 * 0.02562 * 21 20 19 42 42 H 1.07997 * 126.58373 * 180.16004 * 22 21 20 43 43 H 1.08006 * 125.78958 * 179.74674 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.1682 -1.2161 2.1057 7 6 1.6586 -1.9100 3.3066 8 8 2.8543 -2.0215 3.4988 9 7 0.7828 -2.4177 4.1963 10 6 1.2712 -3.1034 5.3953 11 6 1.4398 -2.1050 6.5114 12 1 1.2062 -1.0638 6.3445 13 6 1.8924 -2.5207 7.7457 14 7 2.1764 -3.7886 7.9491 15 14 2.1021 -1.2829 9.1290 16 1 0.7947 -0.6431 9.4231 17 1 2.5970 -1.9780 10.3444 18 1 3.0807 -0.2438 8.7194 19 6 -0.6576 -2.2838 3.9645 20 6 -1.1526 -3.4715 3.1801 21 6 -1.6053 -4.6257 3.7019 22 6 -1.9653 -5.4538 2.6140 23 6 -1.7032 -4.7592 1.4922 24 8 -1.2112 -3.5593 1.8411 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 3.0943 -0.8093 1.4012 35 1 0.1064 -1.1175 1.9349 36 1 0.5528 -3.8662 5.6956 37 1 2.2310 -3.5730 5.1798 38 1 2.4944 -4.0811 8.8176 39 1 -1.1770 -2.2386 4.9217 40 1 -0.8517 -1.3704 3.4023 41 1 -1.6816 -4.8716 4.7508 42 1 -2.3696 -6.4535 2.6723 43 1 -1.8612 -5.1076 0.4822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074250310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:24 Heat of formation + Delta-G solvation = -12.171197 kcal Electronic energy + Delta-G solvation = -23665.978070 eV Core-core repulsion = 20292.294327 eV Total energy + Delta-G solvation = -3373.683743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.28446 -39.15622 -37.56096 -35.16742 -32.82923 -32.64875 -31.21482 -30.09353 -27.50405 -27.36970 -27.30606 -25.44417 -23.94557 -21.78428 -21.45003 -20.44572 -18.81713 -17.87722 -17.24541 -16.80020 -16.27581 -15.75442 -15.33108 -14.71191 -14.57612 -14.43830 -14.23086 -13.96185 -13.58808 -12.90836 -12.61443 -12.58602 -12.47768 -12.40477 -12.17243 -12.12642 -11.90638 -11.74452 -11.45875 -11.20599 -11.08240 -10.98288 -10.87658 -10.65209 -10.55364 -10.17934 -9.72342 -9.64020 -9.07015 -8.95366 -8.43048 -8.27788 -7.75241 -6.03639 -4.08674 1.82195 1.95082 2.85684 3.22648 3.32674 3.37215 3.40368 3.97559 4.09286 4.45357 4.67572 4.76721 4.92900 4.97104 5.14161 5.25975 5.28262 5.30846 5.41228 5.47210 5.53694 5.57081 5.63050 5.70453 5.79872 5.80316 5.92555 5.98114 6.03897 6.09133 6.19414 6.21309 6.23752 6.32464 6.61141 6.74191 6.75647 7.11230 7.35688 7.46518 7.53597 7.92579 8.23004 8.36963 8.90327 9.09098 9.56368 11.04451 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.005516 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.908509 B = 5075.086815 C = 6872.800763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.075 4.075 6 C -0.206 4.206 7 C 0.538 3.462 8 O -0.540 6.540 9 N -0.590 5.590 10 C 0.247 3.753 11 C -0.528 4.528 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.191 3.809 20 C -0.024 4.024 21 C -0.195 4.195 22 C -0.214 4.214 23 C -0.051 4.051 24 O -0.174 6.174 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.033 0.967 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.703 3.898 -16.746 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.045 4.045 3 C -0.195 4.195 4 C -0.194 4.194 5 C -0.095 4.095 6 C -0.227 4.227 7 C 0.327 3.673 8 O -0.418 6.418 9 N -0.320 5.320 10 C 0.128 3.872 11 C -0.567 4.567 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.066 3.934 20 C -0.076 4.076 21 C -0.216 4.216 22 C -0.233 4.233 23 C -0.119 4.119 24 O -0.070 6.070 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.899 3.927 -16.645 18.838 hybrid contribution -0.057 0.146 0.975 0.988 sum -7.956 4.073 -15.669 18.039 Atomic orbital electron populations 1.21993 0.94238 1.02364 1.01775 1.19717 0.95840 0.95376 0.93560 1.21824 1.01324 0.94467 1.01869 1.21812 1.01269 1.00366 0.95958 1.23564 1.00257 0.92850 0.92839 1.23051 1.00719 1.02662 0.96255 1.18513 0.86237 0.79365 0.83136 1.90745 1.15592 1.58710 1.76786 1.48198 1.03710 1.56399 1.23723 1.19312 0.96073 0.92227 0.79611 1.21396 1.44982 0.94813 0.95479 0.92380 1.24926 0.95110 0.95346 0.98602 1.69929 1.44886 1.14599 1.23850 0.86559 0.78531 0.81251 0.81079 1.20211 1.21197 1.20185 1.19906 0.83352 0.91671 0.98425 1.23316 1.03849 1.00117 0.80302 1.21699 1.05430 0.93749 1.00676 1.21813 1.07438 1.01633 0.92391 1.23915 1.03473 0.84564 0.99983 1.84006 1.64934 1.34327 1.23744 0.92208 0.92572 0.91879 0.92329 0.92401 0.92315 0.92380 0.92407 0.92361 0.85900 0.85443 0.94861 0.93799 0.92659 0.86705 0.89714 0.83275 0.83836 0.78645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.13 37.16 0.26 -1.21 16 2 C -0.04 -0.50 0.99 -155.66 -0.15 -0.65 16 3 C -0.14 -1.36 8.46 37.16 0.31 -1.04 16 4 C -0.14 -1.34 8.46 37.16 0.31 -1.03 16 5 C -0.08 -1.12 8.33 -36.13 -0.30 -1.42 16 6 C -0.21 -3.45 8.18 -37.80 -0.31 -3.76 16 7 C 0.54 11.88 7.62 -12.66 -0.10 11.78 16 8 O -0.54 -14.22 15.80 5.27 0.08 -14.14 16 9 N -0.59 -12.85 2.44 -177.83 -0.43 -13.29 16 10 C 0.25 6.51 5.16 -5.20 -0.03 6.48 16 11 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 12 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 15 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C 0.19 3.23 5.66 -5.19 -0.03 3.20 16 20 C -0.02 -0.40 6.90 -35.62 -0.25 -0.64 16 21 C -0.20 -3.12 10.81 -39.70 -0.43 -3.55 16 22 C -0.21 -2.91 10.91 -39.70 -0.43 -3.34 16 23 C -0.05 -0.65 12.09 29.42 0.36 -0.29 16 24 O -0.17 -2.62 10.65 5.71 0.06 -2.56 16 25 H 0.06 0.61 7.50 -51.93 -0.39 0.22 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.67 7.50 -51.93 -0.39 0.28 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.12 2.02 7.49 -52.49 -0.39 1.63 16 35 H 0.13 1.84 3.91 -52.49 -0.21 1.63 16 36 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.11 1.87 8.07 -51.93 -0.42 1.45 16 40 H 0.08 1.21 6.09 -51.93 -0.32 0.89 16 41 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 42 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.20 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -33.55 361.92 -7.01 -40.56 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.69 Total: 2.04 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.20 Total: -9.03 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.30 Total: -39.12 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.14 Total: -16.70 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.55 -7.01 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074250310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.385 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds