Wall clock time and date at job start Tue Mar 31 2020 06:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46836 * 2 1 4 4 C 1.53000 * 109.47371 * 240.00108 * 2 1 3 5 5 C 1.50702 * 109.47325 * 119.99561 * 2 1 3 6 6 C 1.32994 * 119.99736 * 0.02562 * 5 2 1 7 7 C 1.47107 * 119.99517 * 179.97438 * 6 5 2 8 8 O 1.21613 * 120.00270 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99707 * 179.72624 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27735 * 9 7 6 11 11 C 1.50697 * 109.47340 * 89.99486 * 10 9 7 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99650 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99850 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47026 * 60.00300 * 15 13 11 17 17 H 1.48505 * 109.47030 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47297 * 299.99976 * 15 13 11 19 19 C 1.46506 * 119.99880 * 0.26986 * 9 7 6 20 20 C 1.50699 * 109.46706 * 90.00613 * 19 9 7 21 21 C 1.34516 * 125.79161 * 89.71781 * 20 19 9 22 22 C 1.41378 * 106.84066 * 179.88490 * 21 20 19 23 23 C 1.34518 * 106.84080 * 0.37180 * 22 21 20 24 24 O 1.34298 * 108.42272 * 359.77008 * 23 22 21 25 25 H 1.09006 * 109.47216 * 299.99672 * 1 2 3 26 26 H 1.08994 * 109.47395 * 60.00163 * 1 2 3 27 27 H 1.09007 * 109.46593 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47126 * 299.99847 * 3 2 1 30 30 H 1.09001 * 109.47339 * 59.99925 * 3 2 1 31 31 H 1.08998 * 109.46763 * 299.99467 * 4 2 1 32 32 H 1.08994 * 109.47083 * 59.99538 * 4 2 1 33 33 H 1.08996 * 109.47041 * 179.97438 * 4 2 1 34 34 H 1.08001 * 119.99767 * 179.97438 * 5 2 1 35 35 H 1.07991 * 120.00489 * 359.97438 * 6 5 2 36 36 H 1.08994 * 109.47013 * 209.99592 * 10 9 7 37 37 H 1.09005 * 109.46881 * 329.99727 * 10 9 7 38 38 H 0.97004 * 119.99666 * 180.02562 * 14 13 11 39 39 H 1.08997 * 109.47351 * 210.00205 * 19 9 7 40 40 H 1.09001 * 109.47111 * 330.00312 * 19 9 7 41 41 H 1.07998 * 126.57862 * 0.02562 * 21 20 19 42 42 H 1.07997 * 126.58373 * 180.16004 * 22 21 20 43 43 H 1.08006 * 125.78958 * 179.74674 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 1.1682 -1.2161 2.1057 7 6 1.6586 -1.9100 3.3066 8 8 2.8543 -2.0215 3.4988 9 7 0.7828 -2.4177 4.1963 10 6 1.2712 -3.1034 5.3953 11 6 1.4398 -2.1050 6.5114 12 1 1.2062 -1.0638 6.3445 13 6 1.8924 -2.5207 7.7457 14 7 2.1764 -3.7886 7.9491 15 14 2.1021 -1.2829 9.1290 16 1 0.7947 -0.6431 9.4231 17 1 2.5970 -1.9780 10.3444 18 1 3.0807 -0.2438 8.7194 19 6 -0.6576 -2.2838 3.9645 20 6 -1.1526 -3.4715 3.1801 21 6 -1.6053 -4.6257 3.7019 22 6 -1.9653 -5.4538 2.6140 23 6 -1.7032 -4.7592 1.4922 24 8 -1.2112 -3.5593 1.8411 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 3.0943 -0.8093 1.4012 35 1 0.1064 -1.1175 1.9349 36 1 0.5528 -3.8662 5.6956 37 1 2.2310 -3.5730 5.1798 38 1 2.4944 -4.0811 8.8176 39 1 -1.1770 -2.2386 4.9217 40 1 -0.8517 -1.3704 3.4023 41 1 -1.6816 -4.8716 4.7508 42 1 -2.3696 -6.4535 2.6723 43 1 -1.8612 -5.1076 0.4822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074250310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:23 Heat of formation + Delta-G solvation = -31.734648 kcal Electronic energy + Delta-G solvation = -23666.826405 eV Core-core repulsion = 20292.294327 eV Total energy + Delta-G solvation = -3374.532078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.42950 -40.79446 -38.63114 -36.92657 -34.89510 -33.84446 -32.56675 -31.50207 -29.38648 -28.17601 -28.06962 -26.83280 -25.77232 -23.35983 -22.60732 -21.65143 -20.18410 -19.11776 -18.80256 -18.43048 -17.88691 -17.28444 -16.71612 -16.31858 -16.07854 -15.75948 -15.20774 -15.07411 -14.93025 -14.43057 -14.29559 -13.99080 -13.72909 -13.55937 -13.39220 -13.15044 -13.14003 -13.00118 -12.84538 -12.65858 -12.51858 -12.49850 -12.22545 -11.91079 -11.89609 -11.78903 -11.57732 -10.81846 -10.70991 -10.64852 -10.38366 -9.67312 -9.37469 -8.23130 -6.38202 0.44937 0.77169 1.37129 1.41584 1.48954 1.70181 2.08276 2.29300 2.47324 2.51274 3.06865 3.54664 3.79104 3.87309 3.98317 4.11641 4.15584 4.17544 4.24464 4.37416 4.47009 4.59333 4.79320 4.82152 4.90158 4.93689 4.95083 5.03481 5.05342 5.05605 5.16541 5.17595 5.22037 5.25355 5.32960 5.45694 5.46246 5.55335 5.59382 5.63130 5.79644 6.03512 6.24056 6.63328 6.71292 7.24928 7.40201 8.84443 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.005516 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.908509 B = 5075.086815 C = 6872.800763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C -0.137 4.137 4 C -0.136 4.136 5 C -0.051 4.051 6 C -0.220 4.220 7 C 0.527 3.473 8 O -0.600 6.600 9 N -0.594 5.594 10 C 0.265 3.735 11 C -0.544 4.544 12 H 0.057 0.943 13 C 0.009 3.991 14 N -0.928 5.928 15 Si 0.969 3.031 16 H -0.257 1.257 17 H -0.279 1.279 18 H -0.278 1.278 19 C 0.190 3.810 20 C -0.045 4.045 21 C -0.212 4.212 22 C -0.230 4.230 23 C -0.034 4.034 24 O -0.179 6.179 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.156 0.844 36 H 0.025 0.975 37 H -0.007 1.007 38 H 0.267 0.733 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.139 0.861 42 H 0.167 0.833 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.539 5.390 -18.878 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.043 4.043 3 C -0.194 4.194 4 C -0.193 4.193 5 C -0.071 4.071 6 C -0.240 4.240 7 C 0.319 3.681 8 O -0.484 6.484 9 N -0.323 5.323 10 C 0.144 3.856 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.793 3.207 16 H -0.182 1.182 17 H -0.204 1.204 18 H -0.204 1.204 19 C 0.067 3.933 20 C -0.096 4.096 21 C -0.232 4.232 22 C -0.249 4.249 23 C -0.101 4.101 24 O -0.075 6.075 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.173 0.827 36 H 0.043 0.957 37 H 0.011 0.989 38 H 0.076 0.924 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.157 0.843 42 H 0.185 0.815 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.795 5.426 -18.795 21.878 hybrid contribution 0.534 -0.392 1.525 1.662 sum -9.261 5.035 -17.271 20.233 Atomic orbital electron populations 1.22001 0.92886 1.02492 1.02971 1.19830 0.96945 0.95709 0.91806 1.21838 1.01223 0.93489 1.02862 1.21821 1.01183 1.00193 0.96086 1.23903 0.99037 0.90608 0.93579 1.22843 1.02189 1.04271 0.94668 1.19445 0.85515 0.78787 0.84313 1.90699 1.18079 1.61211 1.78375 1.48153 1.06110 1.55669 1.22342 1.18736 0.93493 0.92044 0.81321 1.21659 1.45322 0.94930 0.96352 0.92503 1.25869 0.94434 0.97355 1.01326 1.70059 1.45427 1.16603 1.24670 0.85447 0.79122 0.78482 0.77637 1.18169 1.20360 1.20406 1.20063 0.80163 0.93660 0.99365 1.22976 1.05498 0.99999 0.81106 1.21902 1.05634 0.94535 1.01119 1.22124 1.08191 1.02720 0.91827 1.24842 1.00573 0.83009 1.01676 1.83993 1.65166 1.35561 1.22757 0.92342 0.90128 0.92277 0.92642 0.89809 0.92936 0.92955 0.89816 0.92650 0.88145 0.82705 0.95728 0.98911 0.92381 0.86700 0.86663 0.84313 0.81536 0.74043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 7.13 71.98 0.51 -1.93 16 2 C -0.04 -0.84 0.99 -52.93 -0.05 -0.89 16 3 C -0.14 -2.34 8.46 71.98 0.61 -1.73 16 4 C -0.14 -2.28 8.46 71.98 0.61 -1.68 16 5 C -0.05 -1.50 8.33 24.52 0.20 -1.30 16 6 C -0.22 -7.30 8.18 23.43 0.19 -7.11 16 7 C 0.53 24.32 7.62 86.57 0.66 24.98 16 8 O -0.60 -33.77 15.80 -4.07 -0.06 -33.84 16 9 N -0.59 -27.05 2.44 -834.78 -2.04 -29.08 16 10 C 0.27 14.89 5.16 85.63 0.44 15.33 16 11 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 12 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 13 C 0.01 0.54 5.46 84.66 0.46 1.00 16 14 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 15 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 16 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 C 0.19 6.50 5.66 85.63 0.48 6.98 16 20 C -0.04 -1.44 6.90 24.83 0.17 -1.27 16 21 C -0.21 -6.81 10.81 22.19 0.24 -6.57 16 22 C -0.23 -5.88 10.91 22.19 0.24 -5.63 16 23 C -0.03 -0.75 12.09 66.97 0.81 0.06 16 24 O -0.18 -5.05 10.65 -2.50 -0.03 -5.08 16 25 H 0.06 1.00 7.50 -2.38 -0.02 0.99 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.05 7.50 -2.38 -0.02 1.03 16 28 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 3.42 7.49 -2.91 -0.02 3.40 16 35 H 0.16 4.22 3.91 -2.91 -0.01 4.21 16 36 H 0.02 1.40 8.07 -2.39 -0.02 1.38 16 37 H -0.01 -0.47 7.42 -2.38 -0.02 -0.49 16 38 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.11 3.85 8.07 -2.39 -0.02 3.83 16 40 H 0.12 3.16 6.09 -2.39 -0.01 3.15 16 41 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 42 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 43 H 0.24 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -77.64 361.92 6.99 -70.64 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.98 Total: 18.21 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.83 Total: -11.47 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -1.75 Total: -85.83 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.09 Total: -38.92 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.64 6.99 -70.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074250310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.910 kcal (2) G-P(sol) polarization free energy of solvation -77.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds