Wall clock time and date at job start Tue Mar 31 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46915 * 2 1 4 4 O 1.42905 * 109.46910 * 61.11617 * 3 2 1 5 5 C 1.53001 * 109.46951 * 181.11391 * 3 2 1 6 6 C 1.53007 * 109.47114 * 305.00070 * 5 3 2 7 7 C 1.52994 * 109.46995 * 301.11588 * 3 2 1 8 8 N 1.46508 * 109.47045 * 181.30191 * 7 3 2 9 9 C 1.34775 * 119.99873 * 184.01410 * 8 7 3 10 10 O 1.21603 * 120.00294 * 359.97438 * 9 8 7 11 11 C 1.47432 * 119.99529 * 179.97438 * 9 8 7 12 12 C 1.39230 * 120.28760 * 355.80282 * 11 9 8 13 13 C 1.38217 * 120.09331 * 180.27599 * 12 11 9 14 14 C 1.38827 * 120.67511 * 359.70106 * 13 12 11 15 15 C 1.37597 * 120.57065 * 359.97438 * 14 13 12 16 16 C 1.40708 * 119.88326 * 0.03134 * 15 14 13 17 17 C 1.40883 * 120.32753 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00190 * 216.20673 * 17 16 15 19 19 C 1.40280 * 120.00283 * 36.21546 * 17 16 15 20 20 N 1.30628 * 120.00018 * 190.66299 * 19 17 16 21 21 Si 1.86803 * 119.99741 * 10.65687 * 19 17 16 22 22 H 1.48501 * 109.47091 * 267.26239 * 21 19 17 23 23 H 1.48504 * 109.47168 * 27.26533 * 21 19 17 24 24 H 1.48498 * 109.47097 * 147.26298 * 21 19 17 25 25 H 1.09003 * 109.46945 * 186.05267 * 1 2 3 26 26 H 1.08998 * 109.47045 * 306.05141 * 1 2 3 27 27 H 1.09000 * 109.46942 * 66.05400 * 1 2 3 28 28 H 1.08997 * 109.47352 * 239.99527 * 2 1 3 29 29 H 1.09007 * 109.46803 * 119.99764 * 2 1 3 30 30 H 0.96696 * 113.99484 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.46999 * 64.99686 * 5 3 2 32 32 H 1.08990 * 109.47062 * 184.99967 * 5 3 2 33 33 H 1.08994 * 109.46790 * 59.99843 * 6 5 3 34 34 H 1.08998 * 109.46793 * 180.02562 * 6 5 3 35 35 H 1.08996 * 109.46874 * 299.99693 * 6 5 3 36 36 H 1.08997 * 109.47487 * 61.30208 * 7 3 2 37 37 H 1.09001 * 109.47205 * 301.29653 * 7 3 2 38 38 H 0.97002 * 119.99558 * 4.01445 * 8 7 3 39 39 H 1.07995 * 119.94800 * 359.97438 * 12 11 9 40 40 H 1.07994 * 119.66069 * 179.71627 * 13 12 11 41 41 H 1.07999 * 119.71598 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.05764 * 180.02562 * 15 14 13 43 43 H 0.97000 * 119.99324 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5852 2.1085 1.1797 5 6 3.5698 1.4426 -0.0280 6 6 4.1013 0.6076 1.1387 7 6 1.5072 2.1718 -1.2349 8 7 2.0206 3.5438 -1.2512 9 6 1.6174 4.4029 -2.2082 10 8 0.8277 4.0391 -3.0584 11 6 2.1337 5.7837 -2.2243 12 6 2.9694 6.2328 -1.2052 13 6 3.4465 7.5299 -1.2212 14 6 3.1066 8.3970 -2.2508 15 6 2.2880 7.9801 -3.2752 16 6 1.7887 6.6646 -3.2826 17 6 0.9495 6.2281 -4.3266 18 1 0.1381 5.5465 -4.1181 19 6 1.1678 6.6786 -5.6370 20 7 0.2773 6.4468 -6.5642 21 14 2.7318 7.6101 -6.0560 22 1 2.4900 9.0691 -5.9216 23 1 3.8159 7.2003 -5.1274 24 1 3.1329 7.3013 -7.4521 25 1 -0.3633 -1.0220 0.1084 26 1 -0.3633 0.6048 0.8308 27 1 -0.3633 0.4171 -0.9392 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.8720 3.0295 1.2467 31 1 3.9159 1.0144 -0.9687 32 1 3.9347 2.4657 0.0615 33 1 3.7363 -0.4155 1.0491 34 1 5.1911 0.6081 1.1189 35 1 3.7552 1.0359 2.0793 36 1 0.4178 2.1919 -1.2032 37 1 1.8350 1.6505 -2.1343 38 1 2.6508 3.8339 -0.5733 39 1 3.2412 5.5681 -0.3986 40 1 4.0906 7.8723 -0.4248 41 1 3.4885 9.4071 -2.2481 42 1 2.0292 8.6614 -4.0722 43 1 0.4282 6.7586 -7.4702 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601250412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:28 Heat of formation + Delta-G solvation = -80.294344 kcal Electronic energy + Delta-G solvation = -23762.030088 eV Core-core repulsion = 20385.392304 eV Total energy + Delta-G solvation = -3376.637785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.73985 -38.49799 -36.85670 -33.98867 -33.69104 -33.22099 -31.93834 -30.49293 -30.25891 -27.64566 -25.42582 -24.19625 -23.06374 -22.27749 -21.03124 -19.97271 -19.60284 -17.73074 -17.11639 -16.05374 -15.91236 -15.38542 -15.01287 -14.50954 -14.41220 -14.13609 -13.95237 -13.83111 -13.64150 -13.38656 -13.05369 -12.65078 -12.40090 -12.24922 -12.08725 -12.06546 -11.86635 -11.61741 -11.40133 -11.06659 -10.97207 -10.94941 -10.74055 -10.48223 -10.41914 -10.18082 -9.87712 -9.81065 -9.27971 -8.52039 -8.45728 -7.85109 -7.61941 -6.92590 -4.51066 2.07509 2.57468 3.06585 3.15469 3.26490 3.79898 3.92401 3.97740 4.14259 4.57219 4.61318 4.63884 4.76485 5.13159 5.28540 5.35301 5.37365 5.43502 5.61297 5.63914 5.72352 5.80112 5.81243 5.86188 5.93210 5.98750 6.04349 6.05826 6.15093 6.19443 6.35197 6.37007 6.47787 6.76627 7.01248 7.06872 7.20137 7.36037 7.55570 7.57448 7.72599 7.98611 8.24233 8.45370 8.61246 8.84197 9.32383 10.04024 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.004535 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.050025 B = 6172.041124 C = 6965.116003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C 0.125 3.875 4 O -0.553 6.553 5 C -0.151 4.151 6 C -0.149 4.149 7 C 0.098 3.902 8 N -0.749 5.749 9 C 0.562 3.438 10 O -0.526 6.526 11 C -0.250 4.250 12 C -0.042 4.042 13 C -0.254 4.254 14 C -0.065 4.065 15 C -0.225 4.225 16 C 0.117 3.883 17 C -0.401 4.401 18 H 0.124 0.876 19 C 0.079 3.921 20 N -0.792 5.792 21 Si 0.907 3.093 22 H -0.268 1.268 23 H -0.243 1.243 24 H -0.289 1.289 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.374 0.626 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.386 0.614 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.443 -7.960 11.185 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C 0.084 3.916 4 O -0.358 6.358 5 C -0.189 4.189 6 C -0.206 4.206 7 C -0.026 4.026 8 N -0.406 5.406 9 C 0.355 3.645 10 O -0.403 6.403 11 C -0.255 4.255 12 C -0.060 4.060 13 C -0.274 4.274 14 C -0.084 4.084 15 C -0.244 4.244 16 C 0.112 3.888 17 C -0.428 4.428 18 H 0.142 0.858 19 C -0.142 4.142 20 N -0.415 5.415 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.166 1.166 24 H -0.216 1.216 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.221 0.779 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.221 0.779 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.428 -8.851 10.380 14.681 hybrid contribution 1.299 1.208 -0.172 1.782 sum 6.727 -7.643 10.208 14.418 Atomic orbital electron populations 1.21793 0.95109 1.01449 1.02833 1.21509 0.96965 0.93297 1.02687 1.21496 0.92402 0.93231 0.84483 1.86518 1.78108 1.28962 1.42246 1.22212 0.95440 1.01225 1.00043 1.21765 1.00250 1.00087 0.98535 1.21933 1.00017 0.83200 0.97474 1.45997 1.49926 1.11719 1.32921 1.18342 0.80849 0.85205 0.80130 1.90730 1.34270 1.78323 1.36977 1.19396 1.09955 0.93140 1.03033 1.20735 0.94731 0.95124 0.95452 1.20274 1.09989 0.95197 1.01921 1.20739 0.95786 0.97652 0.94218 1.21159 1.06133 0.96329 1.00786 1.17543 0.89167 0.89896 0.92206 1.20215 1.11150 1.21212 0.90212 0.85825 1.26393 0.97870 0.93391 0.96539 1.69573 1.33234 1.35044 1.03626 0.86386 0.83059 0.79715 0.77522 1.19385 1.16596 1.21573 0.93000 0.91675 0.92301 0.90666 0.90722 0.77865 0.90771 0.91556 0.92416 0.92988 0.92138 0.90670 0.91606 0.77853 0.88934 0.88537 0.88563 0.87771 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.28 37.16 0.35 -1.33 16 2 C -0.11 -1.09 4.68 -26.73 -0.13 -1.22 16 3 C 0.12 1.41 0.51 -90.62 -0.05 1.36 16 4 O -0.55 -6.45 11.79 -35.23 -0.42 -6.86 16 5 C -0.15 -1.52 4.94 -26.73 -0.13 -1.65 16 6 C -0.15 -1.31 9.32 37.16 0.35 -0.96 16 7 C 0.10 1.45 4.40 -4.04 -0.02 1.43 16 8 N -0.75 -12.36 5.00 -61.38 -0.31 -12.67 16 9 C 0.56 12.55 7.72 -12.52 -0.10 12.45 16 10 O -0.53 -13.91 13.53 5.27 0.07 -13.84 16 11 C -0.25 -5.78 5.92 -104.36 -0.62 -6.39 16 12 C -0.04 -0.80 9.52 -39.22 -0.37 -1.18 16 13 C -0.25 -4.89 10.03 -39.37 -0.39 -5.29 16 14 C -0.07 -1.34 10.01 -39.60 -0.40 -1.74 16 15 C -0.23 -5.28 7.01 -38.88 -0.27 -5.55 16 16 C 0.12 2.98 5.03 -106.54 -0.54 2.45 16 17 C -0.40 -11.24 8.32 -37.81 -0.31 -11.55 16 18 H 0.12 3.84 5.95 -52.49 -0.31 3.53 16 19 C 0.08 2.10 5.47 -17.30 -0.09 2.00 16 20 N -0.79 -21.48 13.92 55.56 0.77 -20.70 16 21 Si 0.91 20.65 24.52 -169.99 -4.17 16.48 16 22 H -0.27 -5.80 6.76 56.52 0.38 -5.42 16 23 H -0.24 -5.65 6.73 56.52 0.38 -5.27 16 24 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.77 7.54 -51.93 -0.39 0.38 16 27 H 0.06 0.69 6.78 -51.93 -0.35 0.34 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.71 6.41 -51.93 -0.33 0.37 16 30 H 0.37 3.69 8.02 45.56 0.37 4.05 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.66 6.86 -51.93 -0.36 0.30 16 33 H 0.06 0.48 6.37 -51.93 -0.33 0.14 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 36 H 0.08 1.24 6.62 -51.93 -0.34 0.90 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.39 5.26 4.48 -40.82 -0.18 5.07 16 39 H 0.09 1.41 6.42 -52.49 -0.34 1.08 16 40 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.10 2.41 5.00 -52.49 -0.26 2.15 16 43 H 0.29 6.98 8.29 -40.82 -0.34 6.64 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -30.46 334.91 -7.10 -37.56 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.38 Total: 12.16 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -2.73 Total: -17.17 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.47 Total: -33.37 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.34 Total: -20.71 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.17 Total: 16.48 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.46 -7.10 -37.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601250412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.732 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds