Wall clock time and date at job start Tue Mar 31 2020 06:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46915 * 2 1 4 4 O 1.42905 * 109.46910 * 61.11617 * 3 2 1 5 5 C 1.53001 * 109.46951 * 181.11391 * 3 2 1 6 6 C 1.53007 * 109.47114 * 305.00070 * 5 3 2 7 7 C 1.52994 * 109.46995 * 301.11588 * 3 2 1 8 8 N 1.46508 * 109.47045 * 181.30191 * 7 3 2 9 9 C 1.34775 * 119.99873 * 184.01410 * 8 7 3 10 10 O 1.21603 * 120.00294 * 359.97438 * 9 8 7 11 11 C 1.47432 * 119.99529 * 179.97438 * 9 8 7 12 12 C 1.39230 * 120.28760 * 355.80282 * 11 9 8 13 13 C 1.38217 * 120.09331 * 180.27599 * 12 11 9 14 14 C 1.38827 * 120.67511 * 359.70106 * 13 12 11 15 15 C 1.37597 * 120.57065 * 359.97438 * 14 13 12 16 16 C 1.40708 * 119.88326 * 0.03134 * 15 14 13 17 17 C 1.40883 * 120.32753 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00190 * 216.20673 * 17 16 15 19 19 C 1.40280 * 120.00283 * 36.21546 * 17 16 15 20 20 N 1.30628 * 120.00018 * 190.66299 * 19 17 16 21 21 Si 1.86803 * 119.99741 * 10.65687 * 19 17 16 22 22 H 1.48501 * 109.47091 * 267.26239 * 21 19 17 23 23 H 1.48504 * 109.47168 * 27.26533 * 21 19 17 24 24 H 1.48498 * 109.47097 * 147.26298 * 21 19 17 25 25 H 1.09003 * 109.46945 * 186.05267 * 1 2 3 26 26 H 1.08998 * 109.47045 * 306.05141 * 1 2 3 27 27 H 1.09000 * 109.46942 * 66.05400 * 1 2 3 28 28 H 1.08997 * 109.47352 * 239.99527 * 2 1 3 29 29 H 1.09007 * 109.46803 * 119.99764 * 2 1 3 30 30 H 0.96696 * 113.99484 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.46999 * 64.99686 * 5 3 2 32 32 H 1.08990 * 109.47062 * 184.99967 * 5 3 2 33 33 H 1.08994 * 109.46790 * 59.99843 * 6 5 3 34 34 H 1.08998 * 109.46793 * 180.02562 * 6 5 3 35 35 H 1.08996 * 109.46874 * 299.99693 * 6 5 3 36 36 H 1.08997 * 109.47487 * 61.30208 * 7 3 2 37 37 H 1.09001 * 109.47205 * 301.29653 * 7 3 2 38 38 H 0.97002 * 119.99558 * 4.01445 * 8 7 3 39 39 H 1.07995 * 119.94800 * 359.97438 * 12 11 9 40 40 H 1.07994 * 119.66069 * 179.71627 * 13 12 11 41 41 H 1.07999 * 119.71598 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.05764 * 180.02562 * 15 14 13 43 43 H 0.97000 * 119.99324 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5852 2.1085 1.1797 5 6 3.5698 1.4426 -0.0280 6 6 4.1013 0.6076 1.1387 7 6 1.5072 2.1718 -1.2349 8 7 2.0206 3.5438 -1.2512 9 6 1.6174 4.4029 -2.2082 10 8 0.8277 4.0391 -3.0584 11 6 2.1337 5.7837 -2.2243 12 6 2.9694 6.2328 -1.2052 13 6 3.4465 7.5299 -1.2212 14 6 3.1066 8.3970 -2.2508 15 6 2.2880 7.9801 -3.2752 16 6 1.7887 6.6646 -3.2826 17 6 0.9495 6.2281 -4.3266 18 1 0.1381 5.5465 -4.1181 19 6 1.1678 6.6786 -5.6370 20 7 0.2773 6.4468 -6.5642 21 14 2.7318 7.6101 -6.0560 22 1 2.4900 9.0691 -5.9216 23 1 3.8159 7.2003 -5.1274 24 1 3.1329 7.3013 -7.4521 25 1 -0.3633 -1.0220 0.1084 26 1 -0.3633 0.6048 0.8308 27 1 -0.3633 0.4171 -0.9392 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.8720 3.0295 1.2467 31 1 3.9159 1.0144 -0.9687 32 1 3.9347 2.4657 0.0615 33 1 3.7363 -0.4155 1.0491 34 1 5.1911 0.6081 1.1189 35 1 3.7552 1.0359 2.0793 36 1 0.4178 2.1919 -1.2032 37 1 1.8350 1.6505 -2.1343 38 1 2.6508 3.8339 -0.5733 39 1 3.2412 5.5681 -0.3986 40 1 4.0906 7.8723 -0.4248 41 1 3.4885 9.4071 -2.2481 42 1 2.0292 8.6614 -4.0722 43 1 0.4282 6.7586 -7.4702 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601250412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:27 Heat of formation + Delta-G solvation = -102.486042 kcal Electronic energy + Delta-G solvation = -23762.992392 eV Core-core repulsion = 20385.392304 eV Total energy + Delta-G solvation = -3377.600089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13722 -39.88650 -38.55635 -35.72075 -35.02534 -34.49428 -32.73946 -32.29811 -31.89991 -28.87501 -27.15867 -25.37256 -23.95355 -23.85090 -22.76164 -21.25083 -20.92603 -19.51652 -18.66104 -17.36871 -17.25831 -16.89176 -16.25542 -16.01714 -15.82485 -15.68078 -15.31464 -15.09216 -14.71455 -14.61045 -14.54693 -14.28817 -13.95693 -13.78432 -13.30457 -13.12555 -12.85655 -12.79601 -12.69491 -12.52425 -12.47638 -12.20074 -12.06165 -11.88694 -11.80036 -11.62376 -11.27347 -11.09162 -10.82043 -10.34703 -10.04514 -9.52513 -9.41802 -8.83163 -6.49531 0.33563 0.83667 1.22982 1.36589 1.45562 2.08994 2.24749 2.35509 2.70660 3.24147 3.53438 3.61303 3.75088 3.86711 4.20787 4.24327 4.32193 4.41559 4.44136 4.52764 4.59099 4.64423 4.70260 4.75114 4.83687 4.88747 4.97097 5.01641 5.05011 5.15944 5.21939 5.27696 5.29270 5.43218 5.45997 5.47223 5.56931 5.68320 5.86432 5.96070 6.26894 6.46675 6.63558 6.73239 6.78159 6.88707 7.61416 8.21230 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.004535 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.050025 B = 6172.041124 C = 6965.116003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C 0.137 3.863 4 O -0.558 6.558 5 C -0.150 4.150 6 C -0.145 4.145 7 C 0.098 3.902 8 N -0.723 5.723 9 C 0.554 3.446 10 O -0.578 6.578 11 C -0.267 4.267 12 C -0.039 4.039 13 C -0.229 4.229 14 C -0.062 4.062 15 C -0.247 4.247 16 C 0.100 3.900 17 C -0.452 4.452 18 H 0.071 0.929 19 C 0.035 3.965 20 N -0.849 5.849 21 Si 0.968 3.032 22 H -0.248 1.248 23 H -0.249 1.249 24 H -0.280 1.280 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.382 0.618 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.405 0.595 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.101 0.899 43 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.273 -7.239 14.690 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C 0.096 3.904 4 O -0.365 6.365 5 C -0.188 4.188 6 C -0.202 4.202 7 C -0.026 4.026 8 N -0.379 5.379 9 C 0.347 3.653 10 O -0.459 6.459 11 C -0.272 4.272 12 C -0.057 4.057 13 C -0.248 4.248 14 C -0.080 4.080 15 C -0.266 4.266 16 C 0.096 3.904 17 C -0.481 4.481 18 H 0.089 0.911 19 C -0.178 4.178 20 N -0.476 5.476 21 Si 0.791 3.209 22 H -0.173 1.173 23 H -0.172 1.172 24 H -0.207 1.207 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.231 0.769 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.243 0.757 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.119 0.881 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.285 -8.129 13.950 18.625 hybrid contribution 0.199 0.943 -0.889 1.311 sum 9.484 -7.186 13.061 17.668 Atomic orbital electron populations 1.21772 0.95911 1.02135 1.01299 1.21579 0.96259 0.92744 1.03965 1.21422 0.93455 0.93127 0.82426 1.86526 1.78421 1.29702 1.41855 1.22204 0.93827 1.01955 1.00779 1.21734 1.00864 1.00025 0.97568 1.22063 0.98893 0.82326 0.99360 1.45674 1.49019 1.11651 1.31518 1.18555 0.80337 0.85992 0.80437 1.90737 1.36604 1.79193 1.39386 1.19797 1.10514 0.93353 1.03521 1.21216 0.92832 0.96429 0.95225 1.20954 1.07869 0.94241 1.01716 1.21261 0.94008 0.99811 0.92905 1.21254 1.07673 0.95342 1.02365 1.17813 0.88975 0.91350 0.92273 1.19964 1.12611 1.23075 0.92427 0.91125 1.27132 1.00694 0.94171 0.95852 1.69633 1.35391 1.38295 1.04282 0.85469 0.78806 0.79410 0.77249 1.17257 1.17233 1.20706 0.91293 0.92790 0.94177 0.89690 0.89056 0.76918 0.90936 0.91050 0.91854 0.91965 0.92213 0.92926 0.92588 0.75679 0.84075 0.83627 0.84594 0.88140 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.28 71.98 0.67 -2.61 16 2 C -0.11 -2.02 4.68 30.60 0.14 -1.88 16 3 C 0.14 2.85 0.51 -10.79 -0.01 2.84 16 4 O -0.56 -11.73 11.79 -148.98 -1.76 -13.48 16 5 C -0.15 -2.56 4.94 30.60 0.15 -2.41 16 6 C -0.14 -2.02 9.32 71.98 0.67 -1.35 16 7 C 0.10 2.91 4.40 86.38 0.38 3.29 16 8 N -0.72 -23.24 5.00 -466.36 -2.33 -25.57 16 9 C 0.55 25.39 7.72 86.67 0.67 26.06 16 10 O -0.58 -33.01 13.53 -4.04 -0.05 -33.07 16 11 C -0.27 -12.17 5.92 -19.70 -0.12 -12.28 16 12 C -0.04 -1.32 9.52 22.50 0.21 -1.10 16 13 C -0.23 -7.34 10.03 22.41 0.22 -7.11 16 14 C -0.06 -2.23 10.01 22.26 0.22 -2.01 16 15 C -0.25 -11.27 7.01 22.72 0.16 -11.11 16 16 C 0.10 5.22 5.03 -21.11 -0.11 5.11 16 17 C -0.45 -27.33 8.32 23.41 0.19 -27.14 16 18 H 0.07 4.90 5.95 -2.91 -0.02 4.89 16 19 C 0.04 2.01 5.47 85.37 0.47 2.48 16 20 N -0.85 -49.93 13.92 21.88 0.30 -49.62 16 21 Si 0.97 43.79 24.52 68.60 1.68 45.47 16 22 H -0.25 -10.22 6.76 99.48 0.67 -9.55 16 23 H -0.25 -11.26 6.73 99.48 0.67 -10.59 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.26 7.54 -2.39 -0.02 1.24 16 27 H 0.04 0.99 6.78 -2.39 -0.02 0.97 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.46 6.41 -2.38 -0.02 1.45 16 30 H 0.38 6.36 8.02 -74.06 -0.59 5.76 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.14 6.86 -2.39 -0.02 1.12 16 33 H 0.06 0.82 6.37 -2.39 -0.02 0.80 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.86 7.82 -2.39 -0.02 0.84 16 36 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.40 9.75 4.48 -92.71 -0.42 9.33 16 39 H 0.14 3.40 6.42 -2.91 -0.02 3.38 16 40 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 41 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 42 H 0.10 4.58 5.00 -2.91 -0.01 4.57 16 43 H 0.29 15.36 8.29 -92.71 -0.77 14.59 16 Total: -1.00 -74.29 334.91 1.74 -72.55 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -0.04 Total: 32.95 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 3.94 Total: -29.23 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -2.03 Total: -75.20 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -1.81 Total: -46.55 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.68 Total: 45.47 kcal Total: -74.29 1.74 -72.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601250412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.940 kcal (2) G-P(sol) polarization free energy of solvation -74.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds