Wall clock time and date at job start Tue Mar 31 2020 07:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46820 * 2 1 4 4 C 1.53001 * 109.46795 * 119.99136 * 2 1 3 5 5 C 1.53007 * 109.46829 * 65.00864 * 4 2 1 6 6 H 1.09000 * 109.46828 * 304.99539 * 5 4 2 7 7 C 1.53002 * 109.46816 * 184.99729 * 5 4 2 8 8 O 1.42901 * 109.46901 * 304.99207 * 7 5 4 9 9 N 1.46495 * 109.47244 * 64.99375 * 5 4 2 10 10 C 1.34779 * 119.99598 * 205.00185 * 9 5 4 11 11 O 1.21607 * 120.00321 * 359.97438 * 10 9 5 12 12 C 1.47436 * 119.99464 * 180.02562 * 10 9 5 13 13 C 1.39225 * 120.28514 * 354.16135 * 12 10 9 14 14 C 1.38222 * 120.09059 * 180.30038 * 13 12 10 15 15 C 1.38827 * 120.67454 * 359.43839 * 14 13 12 16 16 C 1.37589 * 120.57174 * 0.56399 * 15 14 13 17 17 C 1.40705 * 119.88108 * 359.72002 * 16 15 14 18 18 C 1.40900 * 120.32713 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99559 * 145.82958 * 18 17 16 20 20 C 1.40273 * 120.00210 * 325.83646 * 18 17 16 21 21 N 1.30632 * 119.99710 * 350.75411 * 20 18 17 22 22 Si 1.86795 * 120.00093 * 170.75918 * 20 18 17 23 23 H 1.48496 * 109.47331 * 89.99565 * 22 20 18 24 24 H 1.48497 * 109.47225 * 209.99575 * 22 20 18 25 25 H 1.48504 * 109.46990 * 329.99579 * 22 20 18 26 26 H 1.09006 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47536 * 299.99938 * 1 2 3 28 28 H 1.08998 * 109.47165 * 60.00470 * 1 2 3 29 29 H 1.08993 * 109.47309 * 239.99698 * 2 1 3 30 30 H 1.09001 * 109.47101 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46895 * 300.00044 * 3 2 1 32 32 H 1.08995 * 109.47558 * 59.99247 * 3 2 1 33 33 H 1.08994 * 109.47814 * 305.00218 * 4 2 1 34 34 H 1.09000 * 109.46450 * 184.99751 * 4 2 1 35 35 H 1.08993 * 109.47274 * 64.99580 * 7 5 4 36 36 H 1.08998 * 109.46613 * 184.99651 * 7 5 4 37 37 H 0.96700 * 113.99648 * 179.97438 * 8 7 5 38 38 H 0.96999 * 120.00331 * 24.99767 * 9 5 4 39 39 H 1.07996 * 119.95439 * 0.02562 * 13 12 10 40 40 H 1.08006 * 119.65921 * 179.70268 * 14 13 12 41 41 H 1.08003 * 119.71590 * 180.30598 * 15 14 13 42 42 H 1.08006 * 120.06067 * 179.74431 * 16 15 14 43 43 H 0.97001 * 119.99775 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6353 -2.1954 1.1881 6 1 0.5563 -2.2706 1.0528 7 6 2.0354 -2.8886 2.4921 8 8 3.4307 -2.6901 2.7284 9 7 2.3148 -2.8420 0.0628 10 6 1.7790 -3.9394 -0.5073 11 8 0.7318 -4.3932 -0.0873 12 6 2.4632 -4.5905 -1.6394 13 6 3.5964 -4.0101 -2.2027 14 6 4.2311 -4.6207 -3.2680 15 6 3.7575 -5.8205 -3.7814 16 6 2.6399 -6.4182 -3.2459 17 6 1.9719 -5.8142 -2.1648 18 6 0.8268 -6.4184 -1.6088 19 1 0.6339 -6.3370 -0.5493 20 6 -0.0624 -7.1257 -2.4313 21 7 0.0681 -7.0748 -3.7301 22 14 -1.4333 -8.1404 -1.6695 23 1 -2.6440 -7.2956 -1.5091 24 1 -1.7468 -9.2918 -2.5534 25 1 -0.9990 -8.6405 -0.3404 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9565 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1262 -0.6442 1.2952 35 1 1.4633 -2.4666 3.3183 36 1 1.8282 -3.9559 2.4145 37 1 3.7546 -3.1031 3.5405 38 1 3.1502 -2.4803 -0.2720 39 1 3.9775 -3.0792 -1.8096 40 1 5.1069 -4.1618 -3.7027 41 1 4.2683 -6.2866 -4.6109 42 1 2.2762 -7.3495 -3.6544 43 1 -0.5470 -7.5636 -4.2989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601368708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:25 Heat of formation + Delta-G solvation = -87.816448 kcal Electronic energy + Delta-G solvation = -23861.410619 eV Core-core repulsion = 20484.446651 eV Total energy + Delta-G solvation = -3376.963968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.31742 -37.66218 -36.35890 -35.94605 -33.83054 -33.19187 -30.49934 -29.74936 -28.69145 -27.10928 -25.97614 -25.36353 -22.60598 -21.22318 -20.61790 -19.68600 -19.37908 -17.45390 -17.29380 -16.28411 -15.49238 -15.17265 -14.90953 -14.71130 -14.31554 -14.12153 -13.64814 -13.52135 -13.28567 -13.07696 -12.68184 -12.48693 -12.25548 -12.05173 -11.89793 -11.79391 -11.53878 -11.39456 -11.08426 -10.97055 -10.67289 -10.57500 -10.48789 -10.47937 -10.40728 -10.04033 -9.82296 -9.63089 -9.23416 -8.35144 -8.26645 -7.54241 -7.31594 -6.76483 -4.34804 2.40799 2.84569 3.11031 3.18153 3.25636 3.99349 4.01109 4.19261 4.50100 4.71696 4.77954 4.98290 5.00856 5.39454 5.45519 5.56223 5.58456 5.67335 5.68815 5.79124 5.87010 5.91517 5.94680 6.04076 6.05439 6.14707 6.24893 6.29528 6.34410 6.47263 6.51101 6.69286 6.99830 7.14219 7.22375 7.30711 7.50579 7.67099 7.73718 7.93331 8.02777 8.21852 8.47409 8.70401 8.86280 8.93919 9.47499 10.19093 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.005161 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.848705 B = 5423.616653 C = 6042.724740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.113 4.113 5 C 0.151 3.849 6 H 0.097 0.903 7 C 0.063 3.937 8 O -0.568 6.568 9 N -0.733 5.733 10 C 0.566 3.434 11 O -0.543 6.543 12 C -0.260 4.260 13 C -0.056 4.056 14 C -0.246 4.246 15 C -0.096 4.096 16 C -0.149 4.149 17 C 0.146 3.854 18 C -0.416 4.416 19 H 0.104 0.896 20 C 0.069 3.931 21 N -0.795 5.795 22 Si 0.917 3.083 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.260 1.260 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.372 0.628 38 H 0.393 0.607 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 9.735 7.931 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.151 4.151 5 C 0.045 3.955 6 H 0.115 0.885 7 C -0.016 4.016 8 O -0.372 6.372 9 N -0.387 5.387 10 C 0.360 3.640 11 O -0.422 6.422 12 C -0.265 4.265 13 C -0.075 4.075 14 C -0.265 4.265 15 C -0.115 4.115 16 C -0.168 4.168 17 C 0.142 3.858 18 C -0.444 4.444 19 H 0.122 0.878 20 C -0.149 4.149 21 N -0.420 5.420 22 Si 0.741 3.259 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.184 1.184 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.218 0.782 38 H 0.228 0.772 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.135 0.865 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.995 9.652 7.452 12.356 hybrid contribution -0.192 -0.511 0.481 0.728 sum 1.803 9.140 7.932 12.236 Atomic orbital electron populations 1.21889 0.95348 1.02278 1.01163 1.21138 0.96004 0.95774 0.98930 1.21827 1.00799 0.96214 1.01351 1.21795 1.01908 0.93632 0.97805 1.20923 0.98299 0.91275 0.85014 0.88477 1.22721 0.81693 1.00183 0.97047 1.86473 1.24555 1.79140 1.47063 1.45968 1.27152 1.30899 1.34682 1.18423 0.84293 0.78811 0.82473 1.90657 1.23463 1.63648 1.64442 1.19477 1.02751 0.99555 1.04700 1.20658 0.94441 0.96937 0.95459 1.20281 1.03682 0.99922 1.02662 1.20795 0.96737 0.95600 0.98327 1.21342 0.94899 1.00858 0.99724 1.17484 0.91038 0.87939 0.89348 1.20137 1.03608 1.23325 0.97378 0.87815 1.26107 0.99424 0.94823 0.94498 1.69722 1.34370 1.33388 1.04520 0.86166 0.80647 0.79010 0.80044 1.19374 1.20356 1.18393 0.92015 0.93084 0.92959 0.90656 0.92830 0.92916 0.93024 0.91325 0.90828 0.93782 0.92857 0.78213 0.77227 0.89265 0.89176 0.89160 0.86540 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.95 37.16 0.33 -1.51 16 2 C -0.10 -1.22 2.86 -90.62 -0.26 -1.48 16 3 C -0.14 -1.47 9.19 37.16 0.34 -1.13 16 4 C -0.11 -1.39 3.94 -26.73 -0.11 -1.50 16 5 C 0.15 2.29 2.23 -67.93 -0.15 2.14 16 6 H 0.10 1.63 5.78 -51.93 -0.30 1.33 16 7 C 0.06 0.88 6.85 37.16 0.25 1.14 16 8 O -0.57 -7.43 12.83 -35.23 -0.45 -7.88 16 9 N -0.73 -13.17 4.34 -54.88 -0.24 -13.41 16 10 C 0.57 13.03 7.68 -12.51 -0.10 12.94 16 11 O -0.54 -14.03 13.25 5.27 0.07 -13.96 16 12 C -0.26 -6.40 5.92 -104.37 -0.62 -7.02 16 13 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 14 C -0.25 -5.33 10.03 -39.37 -0.39 -5.73 16 15 C -0.10 -2.19 10.01 -39.60 -0.40 -2.59 16 16 C -0.15 -3.83 8.62 -38.89 -0.34 -4.16 16 17 C 0.15 3.95 5.51 -106.54 -0.59 3.36 16 18 C -0.42 -11.48 7.68 -37.81 -0.29 -11.77 16 19 H 0.10 2.96 5.92 -52.49 -0.31 2.65 16 20 C 0.07 1.80 5.25 -17.30 -0.09 1.71 16 21 N -0.79 -20.80 11.14 55.56 0.62 -20.18 16 22 Si 0.92 19.80 29.57 -169.99 -5.03 14.77 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 26 H 0.06 0.89 6.46 -51.93 -0.34 0.55 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.06 7.62 -51.93 -0.40 0.66 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.93 7.73 -51.93 -0.40 0.52 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.37 3.28 9.12 45.56 0.42 3.69 16 38 H 0.39 6.53 6.67 -40.82 -0.27 6.26 16 39 H 0.09 1.64 6.44 -52.49 -0.34 1.30 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 42 H 0.12 3.05 6.60 -52.48 -0.35 2.71 16 43 H 0.28 6.70 8.29 -40.82 -0.34 6.36 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -30.22 348.58 -8.19 -38.41 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -5.65 Total: 14.20 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -2.77 Total: -17.20 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.38 Total: -33.58 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.38 Total: -21.84 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.22 -8.19 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601368708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.406 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds