Wall clock time and date at job start Tue Mar 31 2020 07:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46820 * 2 1 4 4 C 1.53001 * 109.46795 * 119.99136 * 2 1 3 5 5 C 1.53007 * 109.46829 * 65.00864 * 4 2 1 6 6 H 1.09000 * 109.46828 * 304.99539 * 5 4 2 7 7 C 1.53002 * 109.46816 * 184.99729 * 5 4 2 8 8 O 1.42901 * 109.46901 * 304.99207 * 7 5 4 9 9 N 1.46495 * 109.47244 * 64.99375 * 5 4 2 10 10 C 1.34779 * 119.99598 * 205.00185 * 9 5 4 11 11 O 1.21607 * 120.00321 * 359.97438 * 10 9 5 12 12 C 1.47436 * 119.99464 * 180.02562 * 10 9 5 13 13 C 1.39225 * 120.28514 * 354.16135 * 12 10 9 14 14 C 1.38222 * 120.09059 * 180.30038 * 13 12 10 15 15 C 1.38827 * 120.67454 * 359.43839 * 14 13 12 16 16 C 1.37589 * 120.57174 * 0.56399 * 15 14 13 17 17 C 1.40705 * 119.88108 * 359.72002 * 16 15 14 18 18 C 1.40900 * 120.32713 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99559 * 145.82958 * 18 17 16 20 20 C 1.40273 * 120.00210 * 325.83646 * 18 17 16 21 21 N 1.30632 * 119.99710 * 350.75411 * 20 18 17 22 22 Si 1.86795 * 120.00093 * 170.75918 * 20 18 17 23 23 H 1.48496 * 109.47331 * 89.99565 * 22 20 18 24 24 H 1.48497 * 109.47225 * 209.99575 * 22 20 18 25 25 H 1.48504 * 109.46990 * 329.99579 * 22 20 18 26 26 H 1.09006 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47536 * 299.99938 * 1 2 3 28 28 H 1.08998 * 109.47165 * 60.00470 * 1 2 3 29 29 H 1.08993 * 109.47309 * 239.99698 * 2 1 3 30 30 H 1.09001 * 109.47101 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46895 * 300.00044 * 3 2 1 32 32 H 1.08995 * 109.47558 * 59.99247 * 3 2 1 33 33 H 1.08994 * 109.47814 * 305.00218 * 4 2 1 34 34 H 1.09000 * 109.46450 * 184.99751 * 4 2 1 35 35 H 1.08993 * 109.47274 * 64.99580 * 7 5 4 36 36 H 1.08998 * 109.46613 * 184.99651 * 7 5 4 37 37 H 0.96700 * 113.99648 * 179.97438 * 8 7 5 38 38 H 0.96999 * 120.00331 * 24.99767 * 9 5 4 39 39 H 1.07996 * 119.95439 * 0.02562 * 13 12 10 40 40 H 1.08006 * 119.65921 * 179.70268 * 14 13 12 41 41 H 1.08003 * 119.71590 * 180.30598 * 15 14 13 42 42 H 1.08006 * 120.06067 * 179.74431 * 16 15 14 43 43 H 0.97001 * 119.99775 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6353 -2.1954 1.1881 6 1 0.5563 -2.2706 1.0528 7 6 2.0354 -2.8886 2.4921 8 8 3.4307 -2.6901 2.7284 9 7 2.3148 -2.8420 0.0628 10 6 1.7790 -3.9394 -0.5073 11 8 0.7318 -4.3932 -0.0873 12 6 2.4632 -4.5905 -1.6394 13 6 3.5964 -4.0101 -2.2027 14 6 4.2311 -4.6207 -3.2680 15 6 3.7575 -5.8205 -3.7814 16 6 2.6399 -6.4182 -3.2459 17 6 1.9719 -5.8142 -2.1648 18 6 0.8268 -6.4184 -1.6088 19 1 0.6339 -6.3370 -0.5493 20 6 -0.0624 -7.1257 -2.4313 21 7 0.0681 -7.0748 -3.7301 22 14 -1.4333 -8.1404 -1.6695 23 1 -2.6440 -7.2956 -1.5091 24 1 -1.7468 -9.2918 -2.5534 25 1 -0.9990 -8.6405 -0.3404 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9565 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1262 -0.6442 1.2952 35 1 1.4633 -2.4666 3.3183 36 1 1.8282 -3.9559 2.4145 37 1 3.7546 -3.1031 3.5405 38 1 3.1502 -2.4803 -0.2720 39 1 3.9775 -3.0792 -1.8096 40 1 5.1069 -4.1618 -3.7027 41 1 4.2683 -6.2866 -4.6109 42 1 2.2762 -7.3495 -3.6544 43 1 -0.5470 -7.5636 -4.2989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601368708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:23 Heat of formation + Delta-G solvation = -107.711098 kcal Electronic energy + Delta-G solvation = -23862.273316 eV Core-core repulsion = 20484.446651 eV Total energy + Delta-G solvation = -3377.826664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92120 -39.17227 -38.00437 -36.96173 -35.65898 -34.69917 -32.11525 -31.59815 -30.23089 -28.01967 -27.27029 -27.00914 -24.31693 -22.90897 -22.04162 -21.10257 -20.75814 -19.32330 -18.46500 -17.93102 -17.12974 -16.81399 -16.13999 -15.97971 -15.80852 -15.65608 -15.07938 -14.99181 -14.77977 -14.49937 -14.46319 -13.97196 -13.45435 -13.34838 -13.13124 -12.98627 -12.95474 -12.85780 -12.70838 -12.49223 -12.40060 -12.27724 -11.89998 -11.54188 -11.52566 -11.46667 -11.42158 -11.13756 -10.90826 -10.19916 -9.84280 -9.37373 -9.21634 -8.66412 -6.34547 0.54489 1.01981 1.32705 1.46010 1.49492 2.20768 2.39087 2.52564 2.80544 3.44906 3.71281 3.75248 3.97862 4.05091 4.29620 4.33854 4.38257 4.40038 4.51324 4.57786 4.64399 4.76214 4.82148 4.85442 4.87432 4.98103 5.03287 5.10795 5.12881 5.19330 5.26032 5.35569 5.37915 5.47907 5.53099 5.63186 5.79138 5.84809 6.07496 6.11983 6.35469 6.66596 6.83224 6.88973 6.94580 7.04222 7.72601 8.31386 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014379 B = 0.005161 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.848705 B = 5423.616653 C = 6042.724740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.100 4.100 5 C 0.143 3.857 6 H 0.078 0.922 7 C 0.070 3.930 8 O -0.575 6.575 9 N -0.713 5.713 10 C 0.562 3.438 11 O -0.580 6.580 12 C -0.279 4.279 13 C -0.055 4.055 14 C -0.237 4.237 15 C -0.093 4.093 16 C -0.177 4.177 17 C 0.114 3.886 18 C -0.455 4.455 19 H 0.081 0.919 20 C 0.031 3.969 21 N -0.825 5.825 22 Si 0.979 3.021 23 H -0.271 1.271 24 H -0.257 1.257 25 H -0.263 1.263 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.019 0.981 37 H 0.392 0.608 38 H 0.402 0.598 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 11.890 8.605 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.196 4.196 4 C -0.138 4.138 5 C 0.038 3.962 6 H 0.096 0.904 7 C -0.009 4.009 8 O -0.382 6.382 9 N -0.366 5.366 10 C 0.355 3.645 11 O -0.462 6.462 12 C -0.284 4.284 13 C -0.073 4.073 14 C -0.256 4.256 15 C -0.111 4.111 16 C -0.197 4.197 17 C 0.111 3.889 18 C -0.484 4.484 19 H 0.099 0.901 20 C -0.183 4.183 21 N -0.451 5.451 22 Si 0.800 3.200 23 H -0.196 1.196 24 H -0.181 1.181 25 H -0.187 1.187 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.241 0.759 38 H 0.238 0.762 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.118 0.882 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.555 11.837 8.141 14.800 hybrid contribution -0.486 -1.024 0.290 1.170 sum 3.069 10.813 8.431 14.051 Atomic orbital electron populations 1.21874 0.95738 1.00684 1.02248 1.21127 0.95672 0.97145 0.97932 1.21772 1.01197 0.94455 1.02195 1.21724 1.02213 0.91047 0.98768 1.21164 0.97185 0.93380 0.84478 0.90395 1.22522 0.82880 0.98132 0.97366 1.86409 1.23719 1.79355 1.48733 1.45756 1.27018 1.29146 1.34699 1.18387 0.83891 0.79835 0.82407 1.90633 1.25083 1.64984 1.65478 1.19892 1.03809 0.99338 1.05359 1.21045 0.93164 0.98013 0.95126 1.20785 1.04189 0.98943 1.01707 1.21168 0.95529 0.95943 0.98497 1.21290 0.96599 1.01084 1.00709 1.17870 0.91472 0.89152 0.90438 1.20094 1.05382 1.26267 0.96699 0.90082 1.26791 1.01226 0.95444 0.94867 1.69749 1.35644 1.34449 1.05303 0.85257 0.77461 0.77959 0.79284 1.19609 1.18095 1.18734 0.94892 0.91111 0.92816 0.92865 0.92139 0.92699 0.91620 0.89071 0.90316 0.90658 0.96219 0.75884 0.76187 0.85486 0.85106 0.86264 0.88230 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.95 71.98 0.64 -2.87 16 2 C -0.10 -2.25 2.86 -10.79 -0.03 -2.28 16 3 C -0.14 -2.40 9.19 71.98 0.66 -1.74 16 4 C -0.10 -2.20 3.94 30.60 0.12 -2.08 16 5 C 0.14 4.25 2.23 45.00 0.10 4.35 16 6 H 0.08 2.67 5.78 -2.39 -0.01 2.65 16 7 C 0.07 1.90 6.85 71.98 0.49 2.39 16 8 O -0.57 -13.70 12.83 -148.98 -1.91 -15.61 16 9 N -0.71 -25.40 4.34 -445.78 -1.94 -27.34 16 10 C 0.56 26.64 7.68 86.67 0.67 27.31 16 11 O -0.58 -31.66 13.25 -4.05 -0.05 -31.71 16 12 C -0.28 -14.00 5.92 -19.70 -0.12 -14.11 16 13 C -0.05 -2.29 9.52 22.50 0.21 -2.08 16 14 C -0.24 -9.59 10.03 22.41 0.22 -9.36 16 15 C -0.09 -4.14 10.01 22.26 0.22 -3.91 16 16 C -0.18 -9.37 8.62 22.72 0.20 -9.17 16 17 C 0.11 6.45 5.51 -21.11 -0.12 6.33 16 18 C -0.46 -26.68 7.68 23.42 0.18 -26.50 16 19 H 0.08 4.98 5.92 -2.91 -0.02 4.96 16 20 C 0.03 1.69 5.25 85.37 0.45 2.14 16 21 N -0.82 -44.98 11.14 21.88 0.24 -44.74 16 22 Si 0.98 42.36 29.57 68.60 2.03 44.39 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 26 H 0.03 0.96 6.46 -2.38 -0.02 0.94 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.43 7.62 -2.39 -0.02 1.41 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.71 7.73 -2.39 -0.02 1.69 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.39 5.94 9.12 -74.06 -0.68 5.27 16 38 H 0.40 12.68 6.67 -92.71 -0.62 12.07 16 39 H 0.13 4.24 6.44 -2.91 -0.02 4.23 16 40 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 41 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 42 H 0.10 5.48 6.60 -2.91 -0.02 5.46 16 43 H 0.29 14.19 8.29 -92.71 -0.77 13.43 16 Total: -1.00 -69.57 348.58 2.01 -67.56 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.26 Total: 39.05 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 3.91 Total: -31.59 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.69 Total: -72.08 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.96 Total: -47.33 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -69.57 2.01 -67.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601368708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.151 kcal (2) G-P(sol) polarization free energy of solvation -69.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds