Wall clock time and date at job start Tue Mar 31 2020 07:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47425 * 2 1 4 4 C 1.53003 * 109.46915 * 120.00050 * 2 1 3 5 5 O 1.42896 * 109.47350 * 64.99944 * 4 2 1 6 6 C 1.42897 * 114.00329 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47526 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47422 * 180.02562 * 7 6 5 9 9 O 1.21277 * 119.99788 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00132 * 180.02562 * 8 7 6 11 11 C 1.39237 * 120.00231 * 185.18464 * 10 8 7 12 12 C 1.39486 * 119.82855 * 324.05356 * 11 10 8 13 13 C 1.36370 * 120.16515 * 180.29933 * 12 11 10 14 14 C 1.40876 * 119.82773 * 359.48291 * 13 12 11 15 15 C 1.41160 * 120.16091 * 180.25102 * 14 13 12 16 16 H 1.07993 * 119.99606 * 205.02487 * 15 14 13 17 17 C 1.39904 * 120.00083 * 25.02497 * 15 14 13 18 18 N 1.30878 * 119.99809 * 17.77995 * 17 15 14 19 19 Si 1.86795 * 120.00190 * 197.77450 * 17 15 14 20 20 H 1.48501 * 109.47012 * 94.98303 * 19 17 15 21 21 H 1.48500 * 109.47567 * 214.98476 * 19 17 15 22 22 H 1.48504 * 109.46924 * 334.98548 * 19 17 15 23 23 C 1.40865 * 119.67384 * 0.51475 * 14 13 12 24 24 C 1.36379 * 119.82607 * 359.73526 * 23 14 13 25 25 H 1.09001 * 109.47140 * 300.00125 * 1 2 3 26 26 H 1.09001 * 109.46844 * 60.00135 * 1 2 3 27 27 H 1.08996 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47140 * 239.99875 * 2 1 3 29 29 H 1.08994 * 109.47152 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46999 * 299.99770 * 3 2 1 31 31 H 1.09001 * 109.47063 * 59.99827 * 3 2 1 32 32 H 1.08999 * 109.46988 * 304.99861 * 4 2 1 33 33 H 1.09001 * 109.47227 * 184.99921 * 4 2 1 34 34 H 1.09010 * 109.47004 * 60.00145 * 6 5 4 35 35 H 1.08995 * 109.47569 * 300.00357 * 6 5 4 36 36 H 1.09004 * 109.46908 * 59.99771 * 7 6 5 37 37 H 1.09004 * 109.47079 * 300.00672 * 7 6 5 38 38 H 0.97007 * 119.99967 * 5.17437 * 10 8 7 39 39 H 1.07998 * 119.91418 * 0.02562 * 12 11 10 40 40 H 1.08005 * 120.08508 * 179.69974 * 13 12 11 41 41 H 0.97000 * 119.99698 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.08712 * 179.71205 * 23 14 13 43 43 H 1.07999 * 119.91122 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.6619 -2.0981 1.1921 6 6 2.0922 -2.8663 2.3175 7 6 1.6341 -4.3166 2.1505 8 6 2.0874 -5.1265 3.3377 9 8 2.7155 -4.5962 4.2294 10 7 1.7957 -6.4404 3.4081 11 6 2.1191 -7.1651 4.5522 12 6 3.2912 -6.8736 5.2499 13 6 3.6177 -7.5831 6.3678 14 6 2.7622 -8.6053 6.8237 15 6 3.0906 -9.3406 7.9830 16 1 2.7020 -10.3392 8.1172 17 6 3.9195 -8.7756 8.9583 18 7 4.1087 -7.4809 8.9861 19 14 4.7559 -9.8691 10.2208 20 1 6.1261 -10.2032 9.7559 21 1 4.8345 -9.1545 11.5201 22 1 3.9720 -11.1190 10.3899 23 6 1.5802 -8.8938 6.1137 24 6 1.2697 -8.1791 4.9944 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6444 1.2952 34 1 1.6590 -2.4514 3.2277 35 1 3.1796 -2.8339 2.3853 36 1 2.0669 -4.7317 1.2403 37 1 0.5466 -4.3486 2.0830 38 1 1.3604 -6.8813 2.6616 39 1 3.9440 -6.0870 4.9014 40 1 4.5280 -7.3595 6.9043 41 1 4.6831 -7.0891 9.6625 42 1 0.9219 -9.6792 6.4545 43 1 0.3641 -8.3995 4.4488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031745393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:05 Heat of formation + Delta-G solvation = -83.969682 kcal Electronic energy + Delta-G solvation = -22033.782732 eV Core-core repulsion = 18656.985573 eV Total energy + Delta-G solvation = -3376.797159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.72385 -38.39777 -37.24070 -35.34293 -34.45089 -32.97786 -31.48091 -29.47462 -28.91317 -27.42274 -26.32942 -25.09635 -23.33512 -21.37507 -20.90103 -20.43320 -19.44188 -17.34434 -17.28916 -16.50759 -16.47591 -15.85731 -15.34361 -15.10376 -14.85465 -14.33936 -13.97015 -13.56191 -13.42919 -13.07597 -13.01129 -12.67107 -12.61468 -12.39860 -12.05112 -11.84698 -11.61504 -11.46965 -11.42067 -11.23777 -11.13905 -11.02029 -10.92058 -10.80742 -10.51407 -9.95037 -9.87048 -9.66539 -9.44091 -9.09422 -8.66573 -7.52257 -7.02723 -6.74411 -4.29550 2.58444 2.99380 3.07600 3.11147 3.11749 3.21114 3.39754 3.93174 4.05463 4.58847 4.63139 4.64214 4.84873 4.92734 5.05068 5.23819 5.25059 5.30357 5.34460 5.46286 5.57541 5.59422 5.67058 5.71729 5.76559 5.80172 5.84548 6.01809 6.08387 6.15338 6.41023 6.81325 6.99768 7.05413 7.09945 7.16058 7.29607 7.60366 7.67918 7.97065 8.05924 8.21068 8.31789 8.63192 8.77311 8.88445 9.00996 10.18741 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033903 B = 0.002409 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.698065 B =11622.028960 C =12244.804986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.147 4.147 4 C 0.067 3.933 5 O -0.392 6.392 6 C 0.079 3.921 7 C -0.136 4.136 8 C 0.501 3.499 9 O -0.532 6.532 10 N -0.650 5.650 11 C -0.011 4.011 12 C -0.085 4.085 13 C -0.159 4.159 14 C 0.106 3.894 15 C -0.459 4.459 16 H 0.079 0.921 17 C 0.074 3.926 18 N -0.788 5.788 19 Si 0.909 3.091 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.216 4.216 24 C -0.103 4.103 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.395 0.605 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.281 0.719 42 H 0.095 0.905 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 10.869 -14.751 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.009 4.009 5 O -0.311 6.311 6 C 0.002 3.998 7 C -0.176 4.176 8 C 0.287 3.713 9 O -0.409 6.409 10 N -0.293 5.293 11 C -0.103 4.103 12 C -0.105 4.105 13 C -0.179 4.179 14 C 0.103 3.897 15 C -0.488 4.488 16 H 0.097 0.903 17 C -0.145 4.145 18 N -0.412 5.412 19 Si 0.734 3.266 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.237 4.237 24 C -0.123 4.123 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.229 0.771 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.477 11.385 -14.117 18.466 hybrid contribution 0.224 -0.511 0.519 0.762 sum -3.253 10.874 -13.598 17.712 Atomic orbital electron populations 1.21788 0.94587 1.02483 1.01315 1.21106 0.96783 0.95582 0.97943 1.21791 1.01129 0.95290 1.02190 1.22551 0.98526 0.81905 0.97960 1.87762 1.79032 1.20336 1.43995 1.22109 0.99203 0.90053 0.88414 1.21440 1.03549 0.94519 0.98114 1.20321 0.80845 0.82383 0.87746 1.90716 1.39305 1.70764 1.40079 1.42929 1.60215 1.08362 1.17815 1.17190 0.98869 1.00951 0.93307 1.20546 0.94727 0.98799 0.96396 1.20999 1.00948 0.99550 0.96358 1.17687 0.89473 0.90997 0.91504 1.19565 1.25527 1.01658 1.02087 0.90336 1.25954 0.94973 0.94983 0.98548 1.69870 1.29030 1.11110 1.31233 0.86288 0.80206 0.80858 0.79296 1.19329 1.20292 1.18566 1.20545 0.98978 1.04770 0.99362 1.20068 0.96938 0.97804 0.97491 0.92888 0.92922 0.91784 0.90424 0.92489 0.92076 0.92466 0.93283 0.93351 0.92383 0.92431 0.88518 0.88422 0.77126 0.87608 0.86314 0.90781 0.88637 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.09 37.16 0.34 -0.83 16 2 C -0.10 -0.79 3.16 -90.62 -0.29 -1.08 16 3 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 4 C 0.07 0.67 5.32 37.16 0.20 0.87 16 5 O -0.39 -4.73 9.88 -35.23 -0.35 -5.08 16 6 C 0.08 1.03 5.23 37.16 0.19 1.23 16 7 C -0.14 -1.70 6.07 -27.88 -0.17 -1.87 16 8 C 0.50 8.75 7.66 -10.99 -0.08 8.67 16 9 O -0.53 -11.68 13.42 5.56 0.07 -11.61 16 10 N -0.65 -11.40 5.30 -9.74 -0.05 -11.45 16 11 C -0.01 -0.25 6.30 -83.57 -0.53 -0.77 16 12 C -0.08 -2.13 8.62 -39.79 -0.34 -2.47 16 13 C -0.16 -4.29 8.63 -39.26 -0.34 -4.63 16 14 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 15 C -0.46 -12.23 9.03 -37.85 -0.34 -12.57 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 17 C 0.07 1.88 5.13 -17.33 -0.09 1.79 16 18 N -0.79 -20.89 10.98 55.55 0.61 -20.28 16 19 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.22 -5.28 9.74 -39.26 -0.38 -5.66 16 24 C -0.10 -2.27 9.90 -39.79 -0.39 -2.66 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.81 8.10 -51.92 -0.42 0.39 16 35 H 0.06 0.79 8.10 -51.93 -0.42 0.36 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 5.29 8.82 -40.82 -0.36 4.93 16 39 H 0.11 2.67 6.24 -52.49 -0.33 2.34 16 40 H 0.12 3.32 6.19 -52.48 -0.32 3.00 16 41 H 0.28 6.78 8.30 -40.82 -0.34 6.45 16 42 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -30.61 358.15 -8.71 -39.32 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.88 Total: 8.31 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -2.48 Total: -18.35 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: 0.56 Total: -31.73 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.27 Total: -16.69 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.61 -8.71 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031745393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.653 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds