Wall clock time and date at job start Tue Mar 31 2020 07:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47425 * 2 1 4 4 C 1.53003 * 109.46915 * 120.00050 * 2 1 3 5 5 O 1.42896 * 109.47350 * 64.99944 * 4 2 1 6 6 C 1.42897 * 114.00329 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47526 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47422 * 180.02562 * 7 6 5 9 9 O 1.21277 * 119.99788 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00132 * 180.02562 * 8 7 6 11 11 C 1.39237 * 120.00231 * 185.18464 * 10 8 7 12 12 C 1.39486 * 119.82855 * 324.05356 * 11 10 8 13 13 C 1.36370 * 120.16515 * 180.29933 * 12 11 10 14 14 C 1.40876 * 119.82773 * 359.48291 * 13 12 11 15 15 C 1.41160 * 120.16091 * 180.25102 * 14 13 12 16 16 H 1.07993 * 119.99606 * 205.02487 * 15 14 13 17 17 C 1.39904 * 120.00083 * 25.02497 * 15 14 13 18 18 N 1.30878 * 119.99809 * 17.77995 * 17 15 14 19 19 Si 1.86795 * 120.00190 * 197.77450 * 17 15 14 20 20 H 1.48501 * 109.47012 * 94.98303 * 19 17 15 21 21 H 1.48500 * 109.47567 * 214.98476 * 19 17 15 22 22 H 1.48504 * 109.46924 * 334.98548 * 19 17 15 23 23 C 1.40865 * 119.67384 * 0.51475 * 14 13 12 24 24 C 1.36379 * 119.82607 * 359.73526 * 23 14 13 25 25 H 1.09001 * 109.47140 * 300.00125 * 1 2 3 26 26 H 1.09001 * 109.46844 * 60.00135 * 1 2 3 27 27 H 1.08996 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47140 * 239.99875 * 2 1 3 29 29 H 1.08994 * 109.47152 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46999 * 299.99770 * 3 2 1 31 31 H 1.09001 * 109.47063 * 59.99827 * 3 2 1 32 32 H 1.08999 * 109.46988 * 304.99861 * 4 2 1 33 33 H 1.09001 * 109.47227 * 184.99921 * 4 2 1 34 34 H 1.09010 * 109.47004 * 60.00145 * 6 5 4 35 35 H 1.08995 * 109.47569 * 300.00357 * 6 5 4 36 36 H 1.09004 * 109.46908 * 59.99771 * 7 6 5 37 37 H 1.09004 * 109.47079 * 300.00672 * 7 6 5 38 38 H 0.97007 * 119.99967 * 5.17437 * 10 8 7 39 39 H 1.07998 * 119.91418 * 0.02562 * 12 11 10 40 40 H 1.08005 * 120.08508 * 179.69974 * 13 12 11 41 41 H 0.97000 * 119.99698 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.08712 * 179.71205 * 23 14 13 43 43 H 1.07999 * 119.91122 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.6619 -2.0981 1.1921 6 6 2.0922 -2.8663 2.3175 7 6 1.6341 -4.3166 2.1505 8 6 2.0874 -5.1265 3.3377 9 8 2.7155 -4.5962 4.2294 10 7 1.7957 -6.4404 3.4081 11 6 2.1191 -7.1651 4.5522 12 6 3.2912 -6.8736 5.2499 13 6 3.6177 -7.5831 6.3678 14 6 2.7622 -8.6053 6.8237 15 6 3.0906 -9.3406 7.9830 16 1 2.7020 -10.3392 8.1172 17 6 3.9195 -8.7756 8.9583 18 7 4.1087 -7.4809 8.9861 19 14 4.7559 -9.8691 10.2208 20 1 6.1261 -10.2032 9.7559 21 1 4.8345 -9.1545 11.5201 22 1 3.9720 -11.1190 10.3899 23 6 1.5802 -8.8938 6.1137 24 6 1.2697 -8.1791 4.9944 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6444 1.2952 34 1 1.6590 -2.4514 3.2277 35 1 3.1796 -2.8339 2.3853 36 1 2.0669 -4.7317 1.2403 37 1 0.5466 -4.3486 2.0830 38 1 1.3604 -6.8813 2.6616 39 1 3.9440 -6.0870 4.9014 40 1 4.5280 -7.3595 6.9043 41 1 4.6831 -7.0891 9.6625 42 1 0.9219 -9.6792 6.4545 43 1 0.3641 -8.3995 4.4488 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031745393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:05 Heat of formation + Delta-G solvation = -101.808801 kcal Electronic energy + Delta-G solvation = -22034.556294 eV Core-core repulsion = 18656.985573 eV Total energy + Delta-G solvation = -3377.570722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25084 -39.44316 -38.91479 -36.28257 -36.01180 -34.74986 -32.66514 -31.38748 -30.70327 -28.00334 -27.39242 -26.60645 -24.63928 -23.20483 -22.55688 -21.28389 -20.87628 -19.25582 -18.57693 -18.05366 -17.47213 -17.10970 -16.91509 -16.32683 -15.86358 -15.70936 -15.37038 -15.07920 -14.78994 -14.43475 -14.11098 -13.93812 -13.88778 -13.66695 -13.46254 -13.31559 -12.98402 -12.82327 -12.69231 -12.40662 -12.35323 -12.32602 -11.91982 -11.75079 -11.73618 -11.70557 -11.50841 -11.23558 -10.79969 -10.60893 -10.44090 -9.46047 -8.89604 -8.62847 -6.28000 0.80987 1.13786 1.37391 1.44225 1.52444 1.77787 2.10118 2.20400 2.73907 2.91729 3.70600 3.76694 3.90817 3.96683 4.04936 4.14639 4.31627 4.43858 4.47837 4.48873 4.55970 4.60217 4.72817 4.82427 4.83505 4.84060 4.99371 5.01847 5.06052 5.10259 5.19457 5.22848 5.30067 5.40329 5.43838 5.45191 5.68184 5.86933 6.08466 6.10126 6.17107 6.33583 6.67221 6.73064 6.91806 7.00430 7.41811 8.32469 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033903 B = 0.002409 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.698065 B =11622.028960 C =12244.804986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.059 3.941 5 O -0.394 6.394 6 C 0.082 3.918 7 C -0.119 4.119 8 C 0.499 3.501 9 O -0.581 6.581 10 N -0.641 5.641 11 C 0.003 3.997 12 C -0.100 4.100 13 C -0.184 4.184 14 C 0.072 3.928 15 C -0.494 4.494 16 H 0.082 0.918 17 C 0.029 3.971 18 N -0.829 5.829 19 Si 0.986 3.014 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.253 1.253 23 C -0.224 4.224 24 C -0.097 4.097 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.421 0.579 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.287 0.713 42 H 0.111 0.889 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 10.744 -16.551 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.017 4.017 5 O -0.313 6.313 6 C 0.005 3.995 7 C -0.159 4.159 8 C 0.288 3.712 9 O -0.461 6.461 10 N -0.286 5.286 11 C -0.090 4.090 12 C -0.120 4.120 13 C -0.204 4.204 14 C 0.070 3.930 15 C -0.523 4.523 16 H 0.100 0.900 17 C -0.186 4.186 18 N -0.455 5.455 19 Si 0.807 3.193 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.176 1.176 23 C -0.244 4.244 24 C -0.117 4.117 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.258 0.742 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.903 11.257 -15.977 20.150 hybrid contribution 0.588 -0.350 0.919 1.146 sum -4.315 10.907 -15.058 19.087 Atomic orbital electron populations 1.21778 0.94381 1.01897 1.01995 1.21126 0.96943 0.96306 0.96828 1.21780 1.01320 0.94186 1.02853 1.22766 0.98864 0.81044 0.99036 1.87747 1.79035 1.21269 1.43274 1.21980 0.98462 0.90747 0.88357 1.21359 1.05152 0.93014 0.96358 1.21214 0.79303 0.82289 0.88369 1.90713 1.41387 1.71680 1.42329 1.42837 1.60146 1.08446 1.17188 1.17271 0.97330 1.00498 0.93949 1.20596 0.96141 0.98629 0.96657 1.20899 1.00886 1.01125 0.97502 1.18039 0.90732 0.91643 0.92604 1.19839 1.27459 1.02086 1.02900 0.89959 1.26888 0.94981 0.96201 1.00499 1.69951 1.30006 1.12990 1.32506 0.85130 0.78891 0.78855 0.76440 1.18842 1.19485 1.17622 1.20834 0.98287 1.05371 0.99949 1.20443 0.98042 0.96492 0.96754 0.92914 0.91579 0.92960 0.90507 0.92230 0.90884 0.92342 0.93329 0.93131 0.93849 0.93587 0.85524 0.85711 0.74160 0.88580 0.88706 0.90275 0.87139 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.09 71.98 0.65 -1.41 16 2 C -0.09 -1.39 3.16 -10.79 -0.03 -1.43 16 3 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 4 C 0.06 1.12 5.32 71.98 0.38 1.50 16 5 O -0.39 -8.86 9.88 -148.98 -1.47 -10.33 16 6 C 0.08 2.04 5.23 71.98 0.38 2.42 16 7 C -0.12 -2.63 6.07 29.85 0.18 -2.45 16 8 C 0.50 16.65 7.66 87.66 0.67 17.33 16 9 O -0.58 -25.78 13.42 -3.02 -0.04 -25.82 16 10 N -0.64 -20.86 5.30 -303.12 -1.61 -22.47 16 11 C 0.00 0.13 6.30 38.56 0.24 0.37 16 12 C -0.10 -5.18 8.62 22.13 0.19 -4.99 16 13 C -0.18 -10.43 8.63 22.48 0.19 -10.23 16 14 C 0.07 4.02 5.57 -21.27 -0.12 3.90 16 15 C -0.49 -27.07 9.03 23.39 0.21 -26.86 16 16 H 0.08 4.27 7.91 -2.91 -0.02 4.24 16 17 C 0.03 1.50 5.13 85.24 0.44 1.94 16 18 N -0.83 -45.90 10.98 21.82 0.24 -45.66 16 19 Si 0.99 39.21 29.59 68.60 2.03 41.24 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 23 C -0.22 -10.84 9.74 22.48 0.22 -10.62 16 24 C -0.10 -4.09 9.90 22.13 0.22 -3.87 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.87 7.82 -2.39 -0.02 0.85 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 34 H 0.04 1.20 8.10 -2.38 -0.02 1.18 16 35 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 36 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.42 9.54 8.82 -92.70 -0.82 8.72 16 39 H 0.10 5.07 6.24 -2.91 -0.02 5.06 16 40 H 0.09 5.70 6.19 -2.91 -0.02 5.68 16 41 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 42 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 43 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -69.67 358.15 3.82 -65.86 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.18 Total: 32.56 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 4.49 Total: -35.37 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -1.37 Total: -68.13 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.51 Total: -36.15 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -69.67 3.82 -65.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031745393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.953 kcal (2) G-P(sol) polarization free energy of solvation -69.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds