Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 C 1.52999 * 109.47473 * 120.00140 * 2 1 3 5 5 N 1.46502 * 109.46954 * 65.00055 * 4 2 1 6 6 C 1.46501 * 119.99601 * 269.99800 * 5 4 2 7 7 C 1.50701 * 109.47493 * 269.99993 * 6 5 4 8 8 H 1.07998 * 119.99560 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00006 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99614 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00150 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47474 * 89.99592 * 11 9 7 13 13 H 1.48497 * 109.47094 * 210.00007 * 11 9 7 14 14 H 1.48505 * 109.46876 * 329.99613 * 11 9 7 15 15 C 1.34770 * 120.00277 * 90.00307 * 5 4 2 16 16 O 1.21282 * 120.00256 * 180.02562 * 15 5 4 17 17 C 1.50703 * 120.00010 * 359.97438 * 15 5 4 18 18 O 1.42902 * 109.47357 * 180.02562 * 17 15 5 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 15 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 H 1.09000 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46952 * 299.99791 * 1 2 3 27 27 H 1.08996 * 109.47349 * 59.99940 * 1 2 3 28 28 H 1.09001 * 109.46952 * 240.00209 * 2 1 3 29 29 H 1.08997 * 109.47275 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46926 * 300.00193 * 3 2 1 31 31 H 1.08996 * 109.47172 * 59.99816 * 3 2 1 32 32 H 1.09003 * 109.46894 * 305.00055 * 4 2 1 33 33 H 1.09000 * 109.47258 * 184.99862 * 4 2 1 34 34 H 1.08997 * 109.47683 * 30.00837 * 6 5 4 35 35 H 1.09011 * 109.46732 * 150.00140 * 6 5 4 36 36 H 0.97001 * 119.99386 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.46805 * 59.99992 * 17 15 5 38 38 H 1.08998 * 109.47364 * 300.00344 * 17 15 5 39 39 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 40 40 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 0.3747 -2.5659 1.7612 7 6 0.5718 -2.9409 3.2075 8 1 1.5509 -2.8639 3.6566 9 6 -0.4979 -3.3822 3.9572 10 7 -0.3257 -3.7099 5.2191 11 14 -2.1912 -3.5161 3.1800 12 1 -2.3617 -4.8702 2.5947 13 1 -3.2307 -3.2903 4.2162 14 1 -2.3275 -2.4941 2.1112 15 6 2.4716 -3.0330 0.6115 16 8 2.1505 -4.2016 0.5624 17 6 3.7858 -2.5874 0.0239 18 8 4.4681 -3.7156 -0.5274 19 6 5.6785 -3.4849 -1.1005 20 6 6.3961 -4.5348 -1.6550 21 6 7.6261 -4.2978 -2.2375 22 6 8.1424 -3.0154 -2.2677 23 6 7.4290 -1.9672 -1.7161 24 6 6.1986 -2.1992 -1.1325 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6055 -0.2617 2.1369 33 1 3.1264 -0.6443 1.2950 34 1 -0.3484 -1.7533 1.6918 35 1 0.0043 -3.4298 1.2091 36 1 -1.0784 -4.0201 5.7466 37 1 4.3990 -2.1376 0.8048 38 1 3.6028 -1.8544 -0.7617 39 1 5.9954 -5.5374 -1.6275 40 1 8.1853 -5.1148 -2.6689 41 1 9.1043 -2.8322 -2.7231 42 1 7.8342 -0.9665 -1.7413 43 1 5.6419 -1.3802 -0.7014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044289183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = -49.979837 kcal Electronic energy + Delta-G solvation = -23403.587527 eV Core-core repulsion = 20028.264278 eV Total energy + Delta-G solvation = -3375.323249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32703 -39.18003 -37.30697 -36.40739 -33.67525 -32.38405 -31.21641 -30.32312 -29.22167 -27.26659 -27.02681 -25.58332 -23.02512 -22.50051 -21.71571 -20.40498 -18.64107 -18.39097 -17.03293 -16.55234 -16.27341 -16.08388 -15.68648 -15.24435 -14.59187 -14.54387 -14.38169 -13.90863 -13.53623 -13.50620 -13.32876 -12.81743 -12.52535 -12.47022 -12.27102 -12.20890 -11.86014 -11.70651 -11.57937 -11.27512 -11.06831 -11.03602 -10.96055 -10.69736 -10.58534 -10.40466 -10.13014 -9.55611 -9.12551 -9.09501 -8.60204 -8.27169 -7.79850 -6.10502 -4.09468 1.21999 1.35250 2.86139 3.16532 3.27611 3.33217 3.35897 3.68978 3.94158 4.37589 4.63533 4.73101 4.83529 4.87526 4.97309 4.99202 5.07543 5.13684 5.22956 5.25725 5.27288 5.38929 5.51493 5.55878 5.67026 5.72756 5.88940 5.95702 5.98354 6.00722 6.14414 6.20938 6.28528 6.36871 6.40532 6.46090 6.62819 6.70101 6.88549 7.22600 7.39247 7.58452 8.10712 8.43639 8.82836 8.93369 9.49201 11.02889 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.004177 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.159530 B = 6702.369024 C = 7762.531852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.144 4.144 4 C 0.111 3.889 5 N -0.585 5.585 6 C 0.215 3.785 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.896 5.896 11 Si 0.874 3.126 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.510 3.490 16 O -0.516 6.516 17 C 0.043 3.957 18 O -0.287 6.287 19 C 0.135 3.865 20 C -0.152 4.152 21 C -0.081 4.081 22 C -0.166 4.166 23 C -0.080 4.080 24 C -0.213 4.213 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.180 9.386 -14.871 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 C -0.202 4.202 4 C -0.013 4.013 5 N -0.318 5.318 6 C 0.095 3.905 7 C -0.569 4.569 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.701 3.299 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.190 1.190 15 C 0.295 3.705 16 O -0.391 6.391 17 C -0.036 4.036 18 O -0.199 6.199 19 C 0.089 3.911 20 C -0.170 4.170 21 C -0.099 4.099 22 C -0.184 4.184 23 C -0.098 4.098 24 C -0.232 4.232 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.765 8.488 -14.686 20.643 hybrid contribution -0.827 0.237 -0.106 0.867 sum 10.938 8.725 -14.792 20.361 Atomic orbital electron populations 1.21944 0.94685 1.02805 1.01342 1.21621 0.97183 0.96122 0.98681 1.21781 1.00639 0.95713 1.02035 1.21658 0.99272 0.81881 0.98502 1.47794 1.21086 1.06412 1.56505 1.19814 0.80077 0.95933 0.94662 1.21329 0.97514 1.44791 0.93303 0.90731 1.24842 0.98861 0.94515 0.94698 1.69896 1.31656 1.44550 1.07347 0.86881 0.84296 0.79398 0.79324 1.19861 1.21029 1.18982 1.19711 0.84727 0.86480 0.79608 1.90723 1.74194 1.17056 1.57117 1.22681 0.93745 0.88444 0.98745 1.86202 1.28896 1.34197 1.70596 1.19171 0.85274 0.93740 0.92900 1.20509 0.95521 0.98587 1.02432 1.20960 0.94417 0.97101 0.97438 1.21034 1.00811 0.93040 1.03515 1.20927 0.93714 0.99095 0.96108 1.21303 0.98957 0.95991 1.06933 0.91635 0.92287 0.93282 0.91543 0.92806 0.92672 0.92249 0.89154 0.91534 0.94246 0.94616 0.92530 0.89408 0.89615 0.84989 0.85454 0.86104 0.85894 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.18 37.16 0.30 -1.71 16 2 C -0.12 -1.41 3.12 -90.62 -0.28 -1.69 16 3 C -0.14 -1.34 9.19 37.16 0.34 -1.00 16 4 C 0.11 1.63 4.70 -4.04 -0.02 1.61 16 5 N -0.59 -11.60 2.28 -175.05 -0.40 -12.00 16 6 C 0.22 5.11 3.30 -5.19 -0.02 5.09 16 7 C -0.53 -15.07 9.94 -34.44 -0.34 -15.42 16 8 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 11 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 15 C 0.51 10.52 7.75 -10.99 -0.09 10.43 16 16 O -0.52 -13.24 16.08 -14.35 -0.23 -13.47 16 17 C 0.04 0.65 3.77 36.01 0.14 0.79 16 18 O -0.29 -4.94 9.67 -39.33 -0.38 -5.32 16 19 C 0.14 1.91 6.69 -39.22 -0.26 1.65 16 20 C -0.15 -1.93 9.99 -39.43 -0.39 -2.33 16 21 C -0.08 -0.83 10.04 -39.61 -0.40 -1.22 16 22 C -0.17 -1.57 10.04 -39.56 -0.40 -1.97 16 23 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 24 C -0.21 -2.47 9.04 -39.44 -0.36 -2.83 16 25 H 0.06 1.04 5.89 -51.93 -0.31 0.73 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.79 7.30 -51.93 -0.38 0.41 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 34 H 0.04 0.88 5.04 -51.93 -0.26 0.62 16 35 H 0.04 0.92 6.85 -51.92 -0.36 0.57 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.09 1.17 6.92 -51.93 -0.36 0.81 16 38 H 0.09 1.05 6.78 -51.93 -0.35 0.70 16 39 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.13 1.25 6.30 -52.48 -0.33 0.92 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -34.65 350.38 -8.39 -43.03 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.49 Total: 0.28 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.27 Total: -7.75 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.37 Total: -38.76 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.61 Total: -18.79 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.65 -8.39 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044289183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.947 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds