Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 C 1.52999 * 109.47473 * 120.00140 * 2 1 3 5 5 N 1.46502 * 109.46954 * 65.00055 * 4 2 1 6 6 C 1.46501 * 119.99601 * 269.99800 * 5 4 2 7 7 C 1.50701 * 109.47493 * 269.99993 * 6 5 4 8 8 H 1.07998 * 119.99560 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00006 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99614 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00150 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47474 * 89.99592 * 11 9 7 13 13 H 1.48497 * 109.47094 * 210.00007 * 11 9 7 14 14 H 1.48505 * 109.46876 * 329.99613 * 11 9 7 15 15 C 1.34770 * 120.00277 * 90.00307 * 5 4 2 16 16 O 1.21282 * 120.00256 * 180.02562 * 15 5 4 17 17 C 1.50703 * 120.00010 * 359.97438 * 15 5 4 18 18 O 1.42902 * 109.47357 * 180.02562 * 17 15 5 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 15 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 H 1.09000 * 109.46975 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46952 * 299.99791 * 1 2 3 27 27 H 1.08996 * 109.47349 * 59.99940 * 1 2 3 28 28 H 1.09001 * 109.46952 * 240.00209 * 2 1 3 29 29 H 1.08997 * 109.47275 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46926 * 300.00193 * 3 2 1 31 31 H 1.08996 * 109.47172 * 59.99816 * 3 2 1 32 32 H 1.09003 * 109.46894 * 305.00055 * 4 2 1 33 33 H 1.09000 * 109.47258 * 184.99862 * 4 2 1 34 34 H 1.08997 * 109.47683 * 30.00837 * 6 5 4 35 35 H 1.09011 * 109.46732 * 150.00140 * 6 5 4 36 36 H 0.97001 * 119.99386 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.46805 * 59.99992 * 17 15 5 38 38 H 1.08998 * 109.47364 * 300.00344 * 17 15 5 39 39 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 40 40 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 0.3747 -2.5659 1.7612 7 6 0.5718 -2.9409 3.2075 8 1 1.5509 -2.8639 3.6566 9 6 -0.4979 -3.3822 3.9572 10 7 -0.3257 -3.7099 5.2191 11 14 -2.1912 -3.5161 3.1800 12 1 -2.3617 -4.8702 2.5947 13 1 -3.2307 -3.2903 4.2162 14 1 -2.3275 -2.4941 2.1112 15 6 2.4716 -3.0330 0.6115 16 8 2.1505 -4.2016 0.5624 17 6 3.7858 -2.5874 0.0239 18 8 4.4681 -3.7156 -0.5274 19 6 5.6785 -3.4849 -1.1005 20 6 6.3961 -4.5348 -1.6550 21 6 7.6261 -4.2978 -2.2375 22 6 8.1424 -3.0154 -2.2677 23 6 7.4290 -1.9672 -1.7161 24 6 6.1986 -2.1992 -1.1325 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6055 -0.2617 2.1369 33 1 3.1264 -0.6443 1.2950 34 1 -0.3484 -1.7533 1.6918 35 1 0.0043 -3.4298 1.2091 36 1 -1.0784 -4.0201 5.7466 37 1 4.3990 -2.1376 0.8048 38 1 3.6028 -1.8544 -0.7617 39 1 5.9954 -5.5374 -1.6275 40 1 8.1853 -5.1148 -2.6689 41 1 9.1043 -2.8322 -2.7231 42 1 7.8342 -0.9665 -1.7413 43 1 5.6419 -1.3802 -0.7014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044289183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = -71.145091 kcal Electronic energy + Delta-G solvation = -23404.505321 eV Core-core repulsion = 20028.264278 eV Total energy + Delta-G solvation = -3376.241043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51450 -40.49457 -38.34057 -37.76433 -35.36553 -34.25356 -32.13086 -31.48075 -30.60931 -28.69877 -27.96812 -26.93220 -24.53727 -23.51242 -22.88776 -21.48379 -20.08820 -19.43039 -19.16908 -17.91419 -17.49953 -17.34223 -16.78651 -16.49186 -16.17835 -15.75427 -15.45232 -15.18613 -14.85476 -14.73551 -14.33924 -14.29864 -13.81984 -13.77360 -13.59353 -13.47047 -13.15268 -12.97250 -12.68794 -12.53430 -12.45357 -12.18125 -12.15248 -11.97661 -11.82110 -11.78584 -11.59803 -11.53637 -10.84168 -10.76051 -9.93299 -9.47429 -9.18754 -8.36028 -6.40887 0.41430 0.49783 1.29529 1.34637 1.42015 1.55957 1.65532 2.28578 2.62645 2.86725 2.98431 3.41517 3.75264 3.93498 3.95006 4.00541 4.04246 4.06442 4.23953 4.31652 4.48253 4.55160 4.58567 4.66133 4.70052 4.73865 4.86435 4.90063 4.93831 5.06015 5.11152 5.11872 5.28235 5.37234 5.40982 5.42508 5.49585 5.51594 5.61592 5.61873 5.86911 6.20223 6.38202 6.57253 6.60612 7.16135 7.29270 8.80994 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.004177 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.159530 B = 6702.369024 C = 7762.531852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.138 4.138 4 C 0.102 3.898 5 N -0.587 5.587 6 C 0.227 3.773 7 C -0.538 4.538 8 H 0.029 0.971 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.943 3.057 12 H -0.279 1.279 13 H -0.273 1.273 14 H -0.235 1.235 15 C 0.497 3.503 16 O -0.582 6.582 17 C 0.057 3.943 18 O -0.326 6.326 19 C 0.100 3.900 20 C -0.177 4.177 21 C -0.082 4.082 22 C -0.161 4.161 23 C -0.080 4.080 24 C -0.216 4.216 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.013 0.987 36 H 0.269 0.731 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.520 12.403 -17.318 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.128 4.128 3 C -0.195 4.195 4 C -0.020 4.020 5 N -0.318 5.318 6 C 0.105 3.895 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.765 3.235 12 H -0.205 1.205 13 H -0.198 1.198 14 H -0.158 1.158 15 C 0.285 3.715 16 O -0.462 6.462 17 C -0.021 4.021 18 O -0.239 6.239 19 C 0.056 3.944 20 C -0.196 4.196 21 C -0.100 4.100 22 C -0.179 4.179 23 C -0.098 4.098 24 C -0.235 4.235 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.173 0.827 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.141 11.578 -17.150 24.513 hybrid contribution -1.071 -0.706 0.661 1.443 sum 12.070 10.872 -16.489 23.147 Atomic orbital electron populations 1.21967 0.95823 1.01027 1.02326 1.21566 0.96225 0.97850 0.97157 1.21743 1.01889 0.93199 1.02701 1.22043 1.01336 0.78877 0.99718 1.47851 1.19767 1.08677 1.55485 1.19453 0.82775 0.95802 0.91488 1.21587 0.95672 1.44761 0.95675 0.95220 1.25815 1.03647 0.93969 0.95107 1.70047 1.33274 1.45953 1.09124 0.85791 0.78619 0.79766 0.79300 1.20461 1.19766 1.15807 1.20736 0.86301 0.85641 0.78815 1.90677 1.75912 1.19838 1.59783 1.22590 0.90813 0.88450 1.00259 1.86136 1.30686 1.35401 1.71724 1.19482 0.84783 0.95500 0.94669 1.20704 0.96914 0.98179 1.03784 1.21284 0.93393 0.98662 0.96638 1.21490 1.01755 0.92387 1.02243 1.21366 0.92833 1.00792 0.94795 1.21558 0.99830 0.95174 1.06891 0.94670 0.92573 0.91104 0.90806 0.90837 0.91289 0.92342 0.90311 0.88393 0.92036 0.96912 0.92246 0.87108 0.85889 0.86212 0.83056 0.82979 0.82662 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 8.18 71.98 0.59 -3.23 16 2 C -0.11 -2.32 3.12 -10.79 -0.03 -2.36 16 3 C -0.14 -2.00 9.19 71.98 0.66 -1.34 16 4 C 0.10 2.85 4.70 86.38 0.41 3.26 16 5 N -0.59 -23.52 2.28 -826.14 -1.88 -25.40 16 6 C 0.23 11.04 3.30 85.63 0.28 11.33 16 7 C -0.54 -31.95 9.94 25.60 0.25 -31.69 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C 0.01 0.76 5.47 84.65 0.46 1.23 16 10 N -0.94 -60.22 13.96 21.45 0.30 -59.92 16 11 Si 0.94 44.81 27.47 68.60 1.88 46.70 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 14 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 15 C 0.50 21.06 7.75 87.66 0.68 21.74 16 16 O -0.58 -31.65 16.08 16.00 0.26 -31.40 16 17 C 0.06 1.69 3.77 71.24 0.27 1.96 16 18 O -0.33 -11.45 9.67 -73.37 -0.71 -12.16 16 19 C 0.10 2.80 6.69 22.51 0.15 2.95 16 20 C -0.18 -4.53 9.99 22.37 0.22 -4.31 16 21 C -0.08 -1.51 10.04 22.25 0.22 -1.29 16 22 C -0.16 -2.46 10.04 22.28 0.22 -2.23 16 23 C -0.08 -1.26 10.04 22.25 0.22 -1.04 16 24 C -0.22 -4.43 9.04 22.36 0.20 -4.23 16 25 H 0.03 1.07 5.89 -2.39 -0.01 1.06 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.51 7.30 -2.39 -0.02 1.49 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 2.39 8.07 -2.39 -0.02 2.38 16 33 H 0.10 2.10 6.44 -2.39 -0.02 2.09 16 34 H 0.06 2.73 5.04 -2.39 -0.01 2.71 16 35 H 0.01 0.68 6.85 -2.38 -0.02 0.67 16 36 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 37 H 0.11 2.74 6.92 -2.39 -0.02 2.72 16 38 H 0.12 2.68 6.78 -2.39 -0.02 2.66 16 39 H 0.12 3.18 8.06 -2.91 -0.02 3.15 16 40 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 43 H 0.15 2.30 6.30 -2.91 -0.02 2.28 16 Total: -1.00 -82.51 350.38 5.60 -76.91 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.93 Total: 14.53 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 4.82 Total: -9.25 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -1.59 Total: -85.33 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.45 Total: -43.56 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -82.51 5.60 -76.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044289183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.767 kcal (2) G-P(sol) polarization free energy of solvation -82.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds