Wall clock time and date at job start Tue Mar 31 2020 07:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47249 * 2 1 4 4 C 1.53001 * 109.47567 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47424 * 180.02562 * 4 3 2 6 6 C 1.35720 * 116.99700 * 180.02562 * 5 4 3 7 7 C 1.39011 * 119.90657 * 0.24997 * 6 5 4 8 8 C 1.37690 * 120.09012 * 180.21192 * 7 6 5 9 9 C 1.39798 * 119.90421 * 359.51458 * 8 7 6 10 10 C 1.47500 * 120.09014 * 180.27613 * 9 8 7 11 11 O 1.21620 * 119.99986 * 323.89382 * 10 9 8 12 12 N 1.34775 * 119.99700 * 143.89014 * 10 9 8 13 13 C 1.36901 * 120.00160 * 186.66565 * 12 10 9 14 14 H 1.08004 * 119.99508 * 345.57035 * 13 12 10 15 15 C 1.39020 * 120.00410 * 165.56817 * 13 12 10 16 16 N 1.31389 * 119.99918 * 35.82664 * 15 13 12 17 17 Si 1.86796 * 120.00112 * 215.82529 * 15 13 12 18 18 H 1.48500 * 109.47000 * 90.00258 * 17 15 13 19 19 H 1.48499 * 109.47337 * 209.99825 * 17 15 13 20 20 H 1.48492 * 109.47402 * 330.00021 * 17 15 13 21 21 C 1.46508 * 120.00134 * 6.67211 * 12 10 9 22 22 C 1.53008 * 109.46901 * 99.92262 * 21 12 10 23 23 C 1.39793 * 119.81524 * 0.25143 * 9 8 7 24 24 C 1.37693 * 119.90505 * 0.02562 * 23 9 8 25 25 H 1.08996 * 109.47598 * 59.99638 * 1 2 3 26 26 H 1.09002 * 109.47732 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47116 * 299.99405 * 1 2 3 28 28 H 1.09006 * 109.46661 * 240.00381 * 2 1 3 29 29 H 1.08996 * 109.47598 * 120.00362 * 2 1 3 30 30 H 1.08999 * 109.47276 * 60.00384 * 3 2 1 31 31 H 1.09002 * 109.47628 * 300.00190 * 3 2 1 32 32 H 1.08999 * 109.46711 * 59.99790 * 4 3 2 33 33 H 1.09002 * 109.46600 * 300.00572 * 4 3 2 34 34 H 1.07995 * 119.95313 * 359.97438 * 7 6 5 35 35 H 1.07992 * 120.04504 * 179.79599 * 8 7 6 36 36 H 0.96995 * 119.99655 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.46765 * 219.91854 * 21 12 10 38 38 H 1.08996 * 109.46852 * 339.92623 * 21 12 10 39 39 H 1.09000 * 109.46584 * 194.92232 * 22 21 12 40 40 H 1.08998 * 109.47057 * 314.91994 * 22 21 12 41 41 H 1.08996 * 109.46785 * 74.92685 * 22 21 12 42 42 H 1.08004 * 120.05186 * 180.02562 * 23 9 8 43 43 H 1.08004 * 119.94967 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3918 2.9675 -0.0010 7 6 6.2367 1.8637 -0.0078 8 6 7.6023 2.0397 -0.0045 9 6 8.1387 3.3306 -0.0045 10 6 9.6010 3.5238 -0.0070 11 8 10.3165 2.7594 0.6117 12 7 10.1442 4.5475 -0.6951 13 6 11.5045 4.6489 -0.8112 14 1 12.1463 4.0605 -0.1721 15 6 12.0598 5.5091 -1.7515 16 7 11.4782 6.6573 -2.0158 17 14 13.6328 5.0328 -2.6393 18 1 13.2952 4.2926 -3.8817 19 1 14.3965 6.2584 -2.9854 20 1 14.4571 4.1686 -1.7568 21 6 9.2790 5.5519 -1.3189 22 6 9.2220 6.7974 -0.4320 23 6 7.2854 4.4379 -0.0026 24 6 5.9209 4.2530 -0.0002 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9288 -0.8909 33 1 3.9336 0.9285 0.8891 34 1 5.8214 0.8668 -0.0119 35 1 8.2580 1.1816 -0.0064 36 1 11.8655 7.2573 -2.6722 37 1 9.6797 5.8199 -2.2964 38 1 8.2752 5.1437 -1.4370 39 1 8.3907 7.4289 -0.7456 40 1 9.0793 6.4979 0.6062 41 1 10.1553 7.3527 -0.5251 42 1 7.6957 5.4369 -0.0030 43 1 5.2610 5.1079 0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:29 Heat of formation + Delta-G solvation = -29.789344 kcal Electronic energy + Delta-G solvation = -22956.207728 eV Core-core repulsion = 19581.760005 eV Total energy + Delta-G solvation = -3374.447724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.10746 -38.84785 -36.77127 -35.27551 -35.15616 -32.17331 -30.84000 -30.26346 -29.38055 -28.92414 -25.22451 -24.34581 -22.64419 -22.30195 -21.74429 -21.14998 -19.40266 -17.96214 -16.91491 -16.51404 -16.42317 -15.62006 -14.97971 -14.93162 -14.54183 -14.23285 -14.05039 -13.67948 -13.54431 -13.43142 -12.98156 -12.84534 -12.65013 -12.23107 -12.10843 -11.80004 -11.63027 -11.45587 -11.33783 -11.23714 -11.08161 -11.03976 -10.83983 -10.64532 -10.38891 -10.36559 -10.22395 -9.85472 -8.71169 -8.58378 -8.42755 -7.90539 -7.78186 -6.54662 -3.74221 1.53576 1.70534 3.14196 3.18416 3.25796 3.30907 3.73518 4.07813 4.38177 4.55938 4.59808 4.72745 4.79962 4.94555 5.01703 5.03310 5.12122 5.20207 5.27723 5.42927 5.45451 5.52291 5.59017 5.69726 5.73761 5.80650 5.87409 5.93690 5.98665 6.18625 6.35513 6.48517 6.54504 6.58378 6.62149 6.75441 6.95753 7.02587 7.25513 7.42592 7.58913 7.72012 8.10288 8.47269 9.14338 9.38813 9.99927 10.46321 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033894 B = 0.003012 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.908410 B = 9294.086807 C = 9638.392719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.058 3.942 5 O -0.318 6.318 6 C 0.124 3.876 7 C -0.217 4.217 8 C -0.041 4.041 9 C -0.127 4.127 10 C 0.471 3.529 11 O -0.595 6.595 12 N -0.426 5.426 13 C -0.317 4.317 14 H 0.108 0.892 15 C 0.045 3.955 16 N -0.841 5.841 17 Si 0.906 3.094 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.091 3.909 22 C -0.158 4.158 23 C -0.078 4.078 24 C -0.160 4.160 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.270 0.730 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.101 0.899 42 H 0.156 0.844 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.985 -5.902 0.282 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.232 6.232 6 C 0.079 3.921 7 C -0.236 4.236 8 C -0.061 4.061 9 C -0.131 4.131 10 C 0.261 3.739 11 O -0.483 6.483 12 N -0.142 5.142 13 C -0.443 4.443 14 H 0.126 0.874 15 C -0.161 4.161 16 N -0.478 5.478 17 Si 0.732 3.268 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.032 4.032 22 C -0.216 4.216 23 C -0.096 4.096 24 C -0.179 4.179 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.119 0.881 42 H 0.173 0.827 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.728 -5.912 0.448 18.693 hybrid contribution 0.761 -0.260 -0.536 0.966 sum -16.967 -6.173 -0.088 18.055 Atomic orbital electron populations 1.21748 0.95275 1.01791 1.02072 1.21437 0.96330 0.95762 1.02469 1.21573 0.92801 0.97607 1.03682 1.22799 0.95059 0.82394 1.01460 1.85967 1.19577 1.28781 1.88873 1.19105 0.81663 0.94277 0.97043 1.21063 0.94112 0.97608 1.10775 1.20944 0.93739 0.96763 0.94635 1.20197 0.94960 0.93495 1.04418 1.17647 0.86314 0.84362 0.85566 1.90597 1.62130 1.48258 1.47275 1.43730 1.06457 1.19907 1.44155 1.19621 0.81179 1.25024 1.18494 0.87422 1.25263 0.99706 0.93900 0.97202 1.70157 1.41279 1.05439 1.30901 0.86250 0.81640 0.78527 0.80374 1.20240 1.21176 1.19185 1.22226 0.92740 0.88394 0.99812 1.22220 1.03473 0.98464 0.97398 1.22019 0.92006 1.00478 0.95144 1.20321 0.95049 0.94432 1.08110 0.92563 0.92540 0.92564 0.91653 0.91654 0.90867 0.90861 0.92106 0.92119 0.85783 0.85311 0.91947 0.88412 0.92382 0.94337 0.94804 0.88075 0.82722 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.15 0.37 -0.51 16 2 C -0.12 -0.80 5.93 -26.74 -0.16 -0.96 16 3 C -0.12 -0.97 5.58 -26.73 -0.15 -1.12 16 4 C 0.06 0.60 4.73 37.16 0.18 0.77 16 5 O -0.32 -4.39 10.12 -18.87 -0.19 -4.58 16 6 C 0.12 1.95 6.70 -39.01 -0.26 1.69 16 7 C -0.22 -3.38 9.01 -39.50 -0.36 -3.74 16 8 C -0.04 -0.77 9.61 -39.20 -0.38 -1.15 16 9 C -0.13 -2.68 5.43 -104.96 -0.57 -3.25 16 10 C 0.47 12.10 7.33 -12.49 -0.09 12.01 16 11 O -0.60 -17.26 16.47 5.26 0.09 -17.17 16 12 N -0.43 -11.00 2.65 -116.00 -0.31 -11.31 16 13 C -0.32 -8.73 9.23 -15.00 -0.14 -8.87 16 14 H 0.11 3.18 7.43 -52.48 -0.39 2.79 16 15 C 0.05 1.15 5.03 -17.45 -0.09 1.06 16 16 N -0.84 -20.79 8.44 55.50 0.47 -20.32 16 17 Si 0.91 20.11 29.67 -169.99 -5.04 15.07 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.09 2.04 4.88 -4.03 -0.02 2.02 16 22 C -0.16 -3.25 8.39 37.16 0.31 -2.94 16 23 C -0.08 -1.44 7.36 -39.20 -0.29 -1.73 16 24 C -0.16 -2.59 9.97 -39.50 -0.39 -2.99 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.59 7.64 -51.93 -0.40 0.19 16 33 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 34 H 0.12 1.57 6.28 -52.49 -0.33 1.24 16 35 H 0.13 2.37 8.01 -52.49 -0.42 1.95 16 36 H 0.27 6.28 8.31 -40.82 -0.34 5.95 16 37 H 0.10 2.33 5.87 -51.93 -0.30 2.03 16 38 H 0.06 1.17 4.28 -51.93 -0.22 0.95 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.69 7.40 -51.93 -0.38 0.31 16 41 H 0.10 2.34 6.06 -51.93 -0.31 2.02 16 42 H 0.16 2.82 3.37 -52.48 -0.18 2.65 16 43 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -30.07 343.26 -8.13 -38.19 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.28 Total: 4.66 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.04 Total: -9.71 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.16 Total: -31.63 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.10 Total: -21.75 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.04 Total: 15.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.07 -8.13 -38.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.404 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds