Wall clock time and date at job start Tue Mar 31 2020 07:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47249 * 2 1 4 4 C 1.53001 * 109.47567 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47424 * 180.02562 * 4 3 2 6 6 C 1.35720 * 116.99700 * 180.02562 * 5 4 3 7 7 C 1.39011 * 119.90657 * 0.24997 * 6 5 4 8 8 C 1.37690 * 120.09012 * 180.21192 * 7 6 5 9 9 C 1.39798 * 119.90421 * 359.51458 * 8 7 6 10 10 C 1.47500 * 120.09014 * 180.27613 * 9 8 7 11 11 O 1.21620 * 119.99986 * 323.89382 * 10 9 8 12 12 N 1.34775 * 119.99700 * 143.89014 * 10 9 8 13 13 C 1.36901 * 120.00160 * 186.66565 * 12 10 9 14 14 H 1.08004 * 119.99508 * 345.57035 * 13 12 10 15 15 C 1.39020 * 120.00410 * 165.56817 * 13 12 10 16 16 N 1.31389 * 119.99918 * 35.82664 * 15 13 12 17 17 Si 1.86796 * 120.00112 * 215.82529 * 15 13 12 18 18 H 1.48500 * 109.47000 * 90.00258 * 17 15 13 19 19 H 1.48499 * 109.47337 * 209.99825 * 17 15 13 20 20 H 1.48492 * 109.47402 * 330.00021 * 17 15 13 21 21 C 1.46508 * 120.00134 * 6.67211 * 12 10 9 22 22 C 1.53008 * 109.46901 * 99.92262 * 21 12 10 23 23 C 1.39793 * 119.81524 * 0.25143 * 9 8 7 24 24 C 1.37693 * 119.90505 * 0.02562 * 23 9 8 25 25 H 1.08996 * 109.47598 * 59.99638 * 1 2 3 26 26 H 1.09002 * 109.47732 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47116 * 299.99405 * 1 2 3 28 28 H 1.09006 * 109.46661 * 240.00381 * 2 1 3 29 29 H 1.08996 * 109.47598 * 120.00362 * 2 1 3 30 30 H 1.08999 * 109.47276 * 60.00384 * 3 2 1 31 31 H 1.09002 * 109.47628 * 300.00190 * 3 2 1 32 32 H 1.08999 * 109.46711 * 59.99790 * 4 3 2 33 33 H 1.09002 * 109.46600 * 300.00572 * 4 3 2 34 34 H 1.07995 * 119.95313 * 359.97438 * 7 6 5 35 35 H 1.07992 * 120.04504 * 179.79599 * 8 7 6 36 36 H 0.96995 * 119.99655 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.46765 * 219.91854 * 21 12 10 38 38 H 1.08996 * 109.46852 * 339.92623 * 21 12 10 39 39 H 1.09000 * 109.46584 * 194.92232 * 22 21 12 40 40 H 1.08998 * 109.47057 * 314.91994 * 22 21 12 41 41 H 1.08996 * 109.46785 * 74.92685 * 22 21 12 42 42 H 1.08004 * 120.05186 * 180.02562 * 23 9 8 43 43 H 1.08004 * 119.94967 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3918 2.9675 -0.0010 7 6 6.2367 1.8637 -0.0078 8 6 7.6023 2.0397 -0.0045 9 6 8.1387 3.3306 -0.0045 10 6 9.6010 3.5238 -0.0070 11 8 10.3165 2.7594 0.6117 12 7 10.1442 4.5475 -0.6951 13 6 11.5045 4.6489 -0.8112 14 1 12.1463 4.0605 -0.1721 15 6 12.0598 5.5091 -1.7515 16 7 11.4782 6.6573 -2.0158 17 14 13.6328 5.0328 -2.6393 18 1 13.2952 4.2926 -3.8817 19 1 14.3965 6.2584 -2.9854 20 1 14.4571 4.1686 -1.7568 21 6 9.2790 5.5519 -1.3189 22 6 9.2220 6.7974 -0.4320 23 6 7.2854 4.4379 -0.0026 24 6 5.9209 4.2530 -0.0002 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9288 -0.8909 33 1 3.9336 0.9285 0.8891 34 1 5.8214 0.8668 -0.0119 35 1 8.2580 1.1816 -0.0064 36 1 11.8655 7.2573 -2.6722 37 1 9.6797 5.8199 -2.2964 38 1 8.2752 5.1437 -1.4370 39 1 8.3907 7.4289 -0.7456 40 1 9.0793 6.4979 0.6062 41 1 10.1553 7.3527 -0.5251 42 1 7.6957 5.4369 -0.0030 43 1 5.2610 5.1079 0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:28 Heat of formation + Delta-G solvation = -45.861568 kcal Electronic energy + Delta-G solvation = -22956.904672 eV Core-core repulsion = 19581.760005 eV Total energy + Delta-G solvation = -3375.144667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49384 -40.39137 -38.12915 -37.14454 -35.94968 -34.06592 -32.23683 -31.63375 -30.96437 -29.92696 -27.09367 -25.24979 -24.23397 -23.77996 -22.97317 -21.88723 -21.10977 -19.17401 -18.81312 -18.14924 -17.31093 -16.95173 -16.78616 -16.06704 -16.01053 -15.65709 -15.53833 -15.14118 -14.86025 -14.55737 -14.21655 -14.10182 -13.99830 -13.71106 -13.27391 -13.14062 -13.00605 -12.84891 -12.77173 -12.64662 -12.20314 -12.12395 -12.03974 -11.98382 -11.87485 -11.65875 -11.56820 -11.39992 -10.64800 -10.41177 -10.03524 -9.79429 -9.16461 -8.50489 -5.80048 0.10444 0.35491 1.34356 1.42112 1.51914 2.04116 2.16391 2.24494 2.74535 2.92956 3.14496 3.79335 3.85511 3.93684 3.95006 4.04318 4.16545 4.25270 4.33862 4.37040 4.46732 4.51121 4.64604 4.68237 4.78120 4.84370 4.88936 4.93685 5.02438 5.04103 5.06323 5.19417 5.26342 5.30821 5.34458 5.37726 5.45816 5.49440 5.53707 5.68286 5.92744 6.06146 6.42413 6.51010 7.14631 7.43677 8.04661 8.49013 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033894 B = 0.003012 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.908410 B = 9294.086807 C = 9638.392719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.114 4.114 4 C 0.047 3.953 5 O -0.320 6.320 6 C 0.139 3.861 7 C -0.206 4.206 8 C -0.049 4.049 9 C -0.160 4.160 10 C 0.456 3.544 11 O -0.647 6.647 12 N -0.435 5.435 13 C -0.367 4.367 14 H 0.071 0.929 15 C 0.025 3.975 16 N -0.839 5.839 17 Si 0.968 3.032 18 H -0.272 1.272 19 H -0.267 1.267 20 H -0.280 1.280 21 C 0.093 3.907 22 C -0.147 4.147 23 C -0.078 4.078 24 C -0.156 4.156 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.158 0.842 35 H 0.121 0.879 36 H 0.280 0.720 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.075 0.925 42 H 0.155 0.845 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.695 -5.738 -0.746 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.151 4.151 4 C -0.028 4.028 5 O -0.233 6.233 6 C 0.092 3.908 7 C -0.224 4.224 8 C -0.069 4.069 9 C -0.164 4.164 10 C 0.248 3.752 11 O -0.539 6.539 12 N -0.150 5.150 13 C -0.494 4.494 14 H 0.089 0.911 15 C -0.182 4.182 16 N -0.473 5.473 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.192 1.192 20 H -0.205 1.205 21 C -0.029 4.029 22 C -0.205 4.205 23 C -0.096 4.096 24 C -0.175 4.175 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.175 0.825 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.172 0.828 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.477 -5.704 -0.603 21.265 hybrid contribution 1.430 -0.328 -0.206 1.481 sum -19.047 -6.032 -0.809 19.996 Atomic orbital electron populations 1.21755 0.94774 1.02293 1.02138 1.21435 0.96738 0.94678 1.02921 1.21571 0.91245 0.98694 1.03638 1.23161 0.96366 0.80787 1.02454 1.85995 1.18050 1.31157 1.88124 1.19208 0.82683 0.94029 0.94830 1.21289 0.92527 0.99462 1.09125 1.20978 0.95191 0.95609 0.95111 1.19944 0.92358 0.95593 1.08467 1.18450 0.88337 0.83638 0.84756 1.90527 1.64021 1.49888 1.49423 1.43920 1.06301 1.20721 1.44097 1.19382 0.82213 1.26849 1.20928 0.91132 1.25848 1.02535 0.93304 0.96550 1.70187 1.42002 1.05015 1.30144 0.85355 0.78267 0.78486 0.78731 1.19699 1.19178 1.20512 1.22315 0.93170 0.88435 0.98940 1.22072 1.03652 0.97845 0.96882 1.21927 0.92804 0.99496 0.95407 1.20553 0.94200 0.95883 1.06816 0.92518 0.91863 0.92525 0.91210 0.91235 0.90956 0.90922 0.91037 0.91134 0.82479 0.86146 0.90952 0.90058 0.89977 0.90481 0.95359 0.90632 0.82807 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.12 -1.22 5.93 30.59 0.18 -1.04 16 3 C -0.11 -1.51 5.58 30.59 0.17 -1.34 16 4 C 0.05 0.79 4.73 71.98 0.34 1.13 16 5 O -0.32 -7.62 10.12 -90.42 -0.92 -8.54 16 6 C 0.14 3.90 6.70 22.64 0.15 4.05 16 7 C -0.21 -5.91 9.01 22.33 0.20 -5.71 16 8 C -0.05 -1.84 9.61 22.52 0.22 -1.62 16 9 C -0.16 -6.88 5.43 -20.08 -0.11 -6.99 16 10 C 0.46 24.72 7.33 86.69 0.64 25.36 16 11 O -0.65 -40.21 16.47 -4.09 -0.07 -40.28 16 12 N -0.43 -23.46 2.65 -639.15 -1.69 -25.16 16 13 C -0.37 -21.37 9.23 84.09 0.78 -20.59 16 14 H 0.07 4.52 7.43 -2.91 -0.02 4.50 16 15 C 0.02 1.27 5.03 84.95 0.43 1.70 16 16 N -0.84 -41.45 8.44 21.68 0.18 -41.27 16 17 Si 0.97 41.88 29.67 68.60 2.04 43.92 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 19 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 C 0.09 4.20 4.88 86.38 0.42 4.62 16 22 C -0.15 -6.00 8.39 71.98 0.60 -5.40 16 23 C -0.08 -2.79 7.36 22.52 0.17 -2.63 16 24 C -0.16 -4.59 9.97 22.33 0.22 -4.37 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.10 7.64 -2.39 -0.02 1.08 16 33 H 0.07 1.09 7.66 -2.39 -0.02 1.08 16 34 H 0.16 3.41 6.28 -2.91 -0.02 3.39 16 35 H 0.12 4.59 8.01 -2.91 -0.02 4.56 16 36 H 0.28 12.73 8.31 -92.71 -0.77 11.96 16 37 H 0.08 3.90 5.87 -2.39 -0.01 3.88 16 38 H 0.08 3.28 4.28 -2.39 -0.01 3.27 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.03 1.16 7.40 -2.39 -0.02 1.14 16 41 H 0.07 3.50 6.06 -2.39 -0.01 3.48 16 42 H 0.15 5.46 3.37 -2.91 -0.01 5.45 16 43 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -68.61 343.26 5.67 -62.94 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 1.01 Total: 21.89 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 5.12 Total: -13.51 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -1.51 Total: -66.42 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.98 Total: -48.82 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.04 Total: 43.92 kcal Total: -68.61 5.67 -62.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.080 kcal (2) G-P(sol) polarization free energy of solvation -68.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds