Wall clock time and date at job start Tue Mar 31 2020 07:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.53000 * 109.47420 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47632 * 179.97438 * 4 3 2 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47163 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.47034 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00364 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99970 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00045 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47486 * 90.00046 * 19 17 15 21 21 H 1.48507 * 109.47160 * 210.00309 * 19 17 15 22 22 H 1.48501 * 109.47007 * 329.99773 * 19 17 15 23 23 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 24 24 C 1.37709 * 119.90833 * 359.97438 * 23 9 8 25 25 H 1.08999 * 109.47069 * 60.00803 * 1 2 3 26 26 H 1.09001 * 109.47107 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47609 * 300.00456 * 1 2 3 28 28 H 1.09001 * 109.47463 * 239.99823 * 2 1 3 29 29 H 1.08999 * 109.47069 * 119.99197 * 2 1 3 30 30 H 1.08992 * 109.47364 * 59.99393 * 3 2 1 31 31 H 1.09005 * 109.47271 * 299.99613 * 3 2 1 32 32 H 1.09007 * 109.46974 * 59.98989 * 4 3 2 33 33 H 1.09005 * 109.46584 * 300.00035 * 4 3 2 34 34 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 35 35 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 36 36 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 37 37 H 1.08999 * 109.46594 * 299.99752 * 13 12 10 38 38 H 1.08991 * 109.46752 * 59.99612 * 13 12 10 39 39 H 1.08997 * 109.47263 * 300.00438 * 14 13 12 40 40 H 1.09005 * 109.47165 * 59.99794 * 14 13 12 41 41 H 0.96999 * 120.00277 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.04691 * 180.02562 * 23 9 8 43 43 H 1.07999 * 119.95155 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3916 2.9677 0.0010 7 6 6.2367 1.8642 -0.0038 8 6 7.6023 2.0404 0.0026 9 6 8.1384 3.3309 0.0020 10 6 9.6016 3.5243 0.0020 11 8 10.3423 2.5601 0.0021 12 7 10.1168 4.7697 0.0020 13 6 11.5692 4.9617 0.0015 14 6 11.8857 6.4586 0.0009 15 6 13.3797 6.6561 0.0010 16 1 14.0376 5.7997 0.0010 17 6 13.9066 7.9302 0.0000 18 7 13.1055 8.9732 -0.0005 19 14 15.7585 8.1750 -0.0005 20 1 16.2490 8.2390 -1.4007 21 1 16.0905 9.4425 0.6987 22 1 16.4083 7.0384 0.7002 23 6 7.2855 4.4377 0.0010 24 6 5.9208 4.2529 0.0001 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6765 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9328 0.9289 0.8909 34 1 5.8216 0.8671 -0.0079 35 1 8.2583 1.1824 0.0033 36 1 9.5258 5.5390 0.0016 37 1 11.9970 4.4999 0.8913 38 1 11.9963 4.5000 -0.8886 39 1 11.4578 6.9201 -0.8890 40 1 11.4584 6.9207 0.8909 41 1 13.4762 9.8696 -0.0008 42 1 7.6959 5.4367 0.0002 43 1 5.2610 5.1079 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:32 Heat of formation + Delta-G solvation = -79.248426 kcal Electronic energy + Delta-G solvation = -21527.400372 eV Core-core repulsion = 18150.807942 eV Total energy + Delta-G solvation = -3376.592430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52922 -39.28154 -37.32426 -35.51173 -34.89120 -32.89522 -31.32347 -30.97948 -29.69523 -28.92751 -25.07531 -24.66275 -23.06310 -22.49881 -21.45255 -20.99083 -20.12458 -18.51241 -17.39933 -16.79560 -16.42707 -16.13844 -15.21685 -15.12936 -14.92402 -14.85302 -14.49768 -14.15271 -13.91954 -13.64108 -13.39428 -13.37278 -13.00572 -12.61573 -12.51457 -12.26753 -12.13874 -11.64426 -11.63192 -11.33303 -11.19953 -11.03818 -10.96708 -10.94295 -10.63476 -10.32466 -9.84362 -9.48360 -9.23525 -9.21397 -8.60598 -8.42995 -8.24992 -6.08745 -4.11527 0.87740 1.19352 2.79051 3.03520 3.30255 3.36275 3.40286 3.68749 3.91709 4.34278 4.35487 4.42646 4.52985 4.61278 4.64817 4.73489 4.85949 4.98642 5.04123 5.14690 5.19912 5.26425 5.26819 5.28356 5.38189 5.45075 5.60001 5.68862 5.78088 5.83498 6.02519 6.11770 6.24299 6.35899 6.40763 6.48548 6.74473 6.91322 7.11891 7.52215 7.62037 7.89392 8.01534 8.28377 8.64515 8.94354 9.53282 11.02836 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.052772 B = 0.002045 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.460403 B =13686.462735 C =14175.267949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.056 3.944 5 O -0.313 6.313 6 C 0.149 3.851 7 C -0.220 4.220 8 C -0.021 4.021 9 C -0.166 4.166 10 C 0.551 3.449 11 O -0.551 6.551 12 N -0.717 5.717 13 C 0.121 3.879 14 C 0.011 3.989 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.046 4.046 24 C -0.159 4.159 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.396 0.604 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.137 0.863 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.947 -14.718 0.003 28.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.019 4.019 5 O -0.227 6.227 6 C 0.103 3.897 7 C -0.238 4.238 8 C -0.040 4.040 9 C -0.170 4.170 10 C 0.338 3.662 11 O -0.431 6.431 12 N -0.367 5.367 13 C -0.001 4.001 14 C -0.026 4.026 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.064 4.064 24 C -0.178 4.178 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.231 0.769 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.155 0.845 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.539 -15.049 0.007 28.786 hybrid contribution 0.795 0.462 -0.012 0.919 sum -23.744 -14.587 -0.004 27.867 Atomic orbital electron populations 1.21748 0.95125 1.01927 1.02143 1.21439 0.96496 0.95543 1.02506 1.21589 0.92400 0.97862 1.03886 1.22905 0.95480 0.81781 1.01719 1.86008 1.19113 1.29471 1.88071 1.19222 0.82146 0.94222 0.94129 1.21191 0.94015 0.98161 1.10481 1.21062 0.94072 0.96846 0.92028 1.20039 0.93615 0.94194 1.09110 1.18159 0.87336 0.83710 0.76981 1.90739 1.61058 1.40210 1.51124 1.46269 1.10029 1.06989 1.73414 1.21755 0.76568 1.00813 1.00935 1.19337 0.97483 0.87881 0.97896 1.21049 0.91247 0.92388 1.51349 0.92219 1.24995 0.98314 0.95983 0.94980 1.69955 1.34732 0.98213 1.50381 0.86508 0.85201 0.77627 0.78190 1.20567 1.21173 1.19731 1.21219 0.92270 0.98687 0.94257 1.20349 0.95022 0.94898 1.07521 0.92514 0.92441 0.92506 0.91609 0.91610 0.90720 0.90714 0.91789 0.91782 0.85061 0.84387 0.76889 0.92395 0.92411 0.95885 0.95876 0.92853 0.84529 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.91 37.16 0.37 -0.26 16 2 C -0.12 -0.54 5.93 -26.73 -0.16 -0.70 16 3 C -0.12 -0.68 5.58 -26.73 -0.15 -0.83 16 4 C 0.06 0.40 4.73 37.16 0.18 0.57 16 5 O -0.31 -3.17 10.12 -18.81 -0.19 -3.36 16 6 C 0.15 1.66 6.70 -39.02 -0.26 1.40 16 7 C -0.22 -2.38 9.01 -39.49 -0.36 -2.74 16 8 C -0.02 -0.27 9.58 -39.22 -0.38 -0.65 16 9 C -0.17 -2.41 5.87 -104.96 -0.62 -3.03 16 10 C 0.55 9.99 7.76 -12.44 -0.10 9.89 16 11 O -0.55 -11.82 16.34 5.29 0.09 -11.73 16 12 N -0.72 -13.00 5.51 -61.33 -0.34 -13.34 16 13 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 14 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 15 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 19 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.05 -0.55 9.53 -39.22 -0.37 -0.93 16 24 C -0.16 -1.78 9.97 -39.50 -0.39 -2.17 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.40 7.64 -51.93 -0.40 0.01 16 33 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 34 H 0.13 1.08 6.28 -52.48 -0.33 0.75 16 35 H 0.14 1.78 7.64 -52.49 -0.40 1.38 16 36 H 0.40 6.17 6.49 -40.82 -0.27 5.91 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.14 1.44 6.39 -52.48 -0.34 1.10 16 43 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -32.32 361.76 -8.83 -41.15 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.74 Total: 0.79 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.81 Total: -9.99 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.40 Total: -38.72 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.10 Total: -15.10 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.32 -8.83 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.098 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds