Wall clock time and date at job start Tue Mar 31 2020 07:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.53000 * 109.47420 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47632 * 179.97438 * 4 3 2 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 3 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47163 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.47034 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00364 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99970 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00045 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47486 * 90.00046 * 19 17 15 21 21 H 1.48507 * 109.47160 * 210.00309 * 19 17 15 22 22 H 1.48501 * 109.47007 * 329.99773 * 19 17 15 23 23 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 24 24 C 1.37709 * 119.90833 * 359.97438 * 23 9 8 25 25 H 1.08999 * 109.47069 * 60.00803 * 1 2 3 26 26 H 1.09001 * 109.47107 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47609 * 300.00456 * 1 2 3 28 28 H 1.09001 * 109.47463 * 239.99823 * 2 1 3 29 29 H 1.08999 * 109.47069 * 119.99197 * 2 1 3 30 30 H 1.08992 * 109.47364 * 59.99393 * 3 2 1 31 31 H 1.09005 * 109.47271 * 299.99613 * 3 2 1 32 32 H 1.09007 * 109.46974 * 59.98989 * 4 3 2 33 33 H 1.09005 * 109.46584 * 300.00035 * 4 3 2 34 34 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 35 35 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 36 36 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 37 37 H 1.08999 * 109.46594 * 299.99752 * 13 12 10 38 38 H 1.08991 * 109.46752 * 59.99612 * 13 12 10 39 39 H 1.08997 * 109.47263 * 300.00438 * 14 13 12 40 40 H 1.09005 * 109.47165 * 59.99794 * 14 13 12 41 41 H 0.96999 * 120.00277 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.04691 * 180.02562 * 23 9 8 43 43 H 1.07999 * 119.95155 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3916 2.9677 0.0010 7 6 6.2367 1.8642 -0.0038 8 6 7.6023 2.0404 0.0026 9 6 8.1384 3.3309 0.0020 10 6 9.6016 3.5243 0.0020 11 8 10.3423 2.5601 0.0021 12 7 10.1168 4.7697 0.0020 13 6 11.5692 4.9617 0.0015 14 6 11.8857 6.4586 0.0009 15 6 13.3797 6.6561 0.0010 16 1 14.0376 5.7997 0.0010 17 6 13.9066 7.9302 0.0000 18 7 13.1055 8.9732 -0.0005 19 14 15.7585 8.1750 -0.0005 20 1 16.2490 8.2390 -1.4007 21 1 16.0905 9.4425 0.6987 22 1 16.4083 7.0384 0.7002 23 6 7.2855 4.4377 0.0010 24 6 5.9208 4.2529 0.0001 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6765 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9328 0.9289 0.8909 34 1 5.8216 0.8671 -0.0079 35 1 8.2583 1.1824 0.0033 36 1 9.5258 5.5390 0.0016 37 1 11.9970 4.4999 0.8913 38 1 11.9963 4.5000 -0.8886 39 1 11.4578 6.9201 -0.8890 40 1 11.4584 6.9207 0.8909 41 1 13.4762 9.8696 -0.0008 42 1 7.6959 5.4367 0.0002 43 1 5.2610 5.1079 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:31 Heat of formation + Delta-G solvation = -98.174822 kcal Electronic energy + Delta-G solvation = -21528.221083 eV Core-core repulsion = 18150.807942 eV Total energy + Delta-G solvation = -3377.413140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49826 -40.51186 -38.29215 -36.63893 -35.97943 -34.86361 -32.36340 -32.12763 -30.89212 -29.90837 -26.87946 -25.36325 -24.31924 -23.24822 -22.80645 -21.91674 -21.43789 -19.40593 -18.72555 -18.35051 -17.36640 -17.23947 -16.50578 -16.48189 -16.39091 -15.88851 -15.68519 -15.05993 -14.90404 -14.78732 -14.54876 -14.30844 -14.23101 -13.85553 -13.54114 -13.24142 -13.13663 -12.98069 -12.83610 -12.53463 -12.25057 -12.17105 -12.00849 -11.85758 -11.75326 -11.67756 -11.47090 -11.44409 -10.97123 -10.60263 -10.15182 -10.09389 -9.29490 -8.23737 -6.34212 -0.15468 0.28523 1.42422 1.42860 1.54364 1.81885 2.08409 2.22035 2.45269 2.81111 3.11014 3.69090 3.76033 3.78131 3.92693 3.97108 4.11975 4.17804 4.30080 4.35170 4.41243 4.48257 4.48812 4.54344 4.63691 4.83969 4.86801 4.91874 4.95728 5.00607 5.11166 5.18699 5.25857 5.27037 5.31986 5.32879 5.44326 5.47973 5.57542 5.58842 5.78370 6.15948 6.32672 6.58431 6.78555 7.20761 7.35014 8.88041 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.052772 B = 0.002045 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.460403 B =13686.462735 C =14175.267949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.047 3.953 5 O -0.320 6.320 6 C 0.155 3.845 7 C -0.213 4.213 8 C -0.027 4.027 9 C -0.191 4.191 10 C 0.552 3.448 11 O -0.591 6.591 12 N -0.713 5.713 13 C 0.140 3.860 14 C 0.022 3.978 15 C -0.548 4.548 16 H 0.059 0.941 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.042 4.042 24 C -0.162 4.162 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.409 0.591 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.266 0.734 42 H 0.149 0.851 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.196 -15.292 -0.009 30.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.153 4.153 4 C -0.027 4.027 5 O -0.233 6.233 6 C 0.108 3.892 7 C -0.232 4.232 8 C -0.046 4.046 9 C -0.194 4.194 10 C 0.342 3.658 11 O -0.474 6.474 12 N -0.364 5.364 13 C 0.016 3.984 14 C -0.016 4.016 15 C -0.586 4.586 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.060 4.060 24 C -0.180 4.180 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.177 0.823 35 H 0.151 0.849 36 H 0.246 0.754 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.167 0.833 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.829 -15.620 -0.006 30.185 hybrid contribution 1.010 0.597 -0.008 1.173 sum -24.819 -15.024 -0.014 29.012 Atomic orbital electron populations 1.21761 0.94973 1.02262 1.02088 1.21431 0.96601 0.94711 1.02988 1.21579 0.91480 0.98657 1.03618 1.23194 0.96259 0.80516 1.02753 1.86021 1.18288 1.31466 1.87544 1.19381 0.82800 0.94297 0.92736 1.21385 0.92878 0.99560 1.09345 1.21119 0.95108 0.96122 0.92271 1.19800 0.91291 0.95770 1.12532 1.18696 0.88880 0.82726 0.75539 1.90706 1.62432 1.41246 1.53001 1.46067 1.08665 1.07974 1.73674 1.21274 0.78800 0.98296 0.99989 1.19150 0.96232 0.89684 0.96511 1.21461 0.92759 0.92756 1.51669 0.92303 1.25863 1.03226 0.95634 0.94368 1.70056 1.36803 0.98696 1.50917 0.85438 0.79299 0.77751 0.78511 1.19769 1.20472 1.19120 1.21321 0.92587 0.98538 0.93587 1.20582 0.94726 0.95857 1.06869 0.92592 0.91933 0.92585 0.91130 0.91133 0.91014 0.91007 0.90718 0.90715 0.82350 0.84860 0.75383 0.93376 0.93367 0.97144 0.97140 0.92533 0.83335 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 71.98 0.71 -0.30 16 2 C -0.12 -0.81 5.93 30.59 0.18 -0.63 16 3 C -0.12 -1.07 5.58 30.59 0.17 -0.90 16 4 C 0.05 0.54 4.73 71.98 0.34 0.88 16 5 O -0.32 -5.66 10.12 -90.23 -0.91 -6.57 16 6 C 0.15 3.08 6.70 22.63 0.15 3.23 16 7 C -0.21 -4.16 9.01 22.33 0.20 -3.96 16 8 C -0.03 -0.68 9.58 22.51 0.22 -0.47 16 9 C -0.19 -5.46 5.87 -20.08 -0.12 -5.58 16 10 C 0.55 20.30 7.76 86.71 0.67 20.97 16 11 O -0.59 -26.00 16.34 -3.99 -0.07 -26.06 16 12 N -0.71 -26.23 5.51 -466.22 -2.57 -28.80 16 13 C 0.14 6.21 5.61 86.38 0.48 6.69 16 14 C 0.02 1.11 5.09 29.85 0.15 1.26 16 15 C -0.55 -30.91 9.11 25.60 0.23 -30.67 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 17 C 0.01 0.45 5.46 84.65 0.46 0.91 16 18 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 19 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 C -0.04 -0.96 9.53 22.51 0.21 -0.75 16 24 C -0.16 -3.27 9.97 22.33 0.22 -3.05 16 25 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.07 0.72 7.64 -2.38 -0.02 0.70 16 33 H 0.07 0.72 7.66 -2.38 -0.02 0.70 16 34 H 0.16 2.14 6.28 -2.91 -0.02 2.12 16 35 H 0.13 3.43 7.64 -2.91 -0.02 3.41 16 36 H 0.41 12.79 6.49 -92.71 -0.60 12.19 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.15 2.95 6.39 -2.91 -0.02 2.93 16 43 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -69.03 361.76 3.46 -65.57 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.39 Total: 16.40 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 4.30 Total: -12.37 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -2.28 Total: -82.83 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.98 Total: -32.64 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.03 3.46 -65.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.602 kcal (2) G-P(sol) polarization free energy of solvation -69.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds