Wall clock time and date at job start Tue Mar 31 2020 07:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47168 * 2 1 4 4 H 1.08995 * 109.47187 * 54.30138 * 3 2 1 5 5 C 1.50691 * 109.47065 * 174.30518 * 3 2 1 6 6 H 1.08001 * 120.00451 * 120.00320 * 5 3 2 7 7 C 1.37878 * 120.00237 * 299.99432 * 5 3 2 8 8 N 1.31511 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99633 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47329 * 89.99824 * 9 7 5 11 11 H 1.48496 * 109.47142 * 209.99461 * 9 7 5 12 12 H 1.48491 * 109.47204 * 329.99625 * 9 7 5 13 13 N 1.46900 * 109.46860 * 294.30548 * 3 2 1 14 14 C 1.46894 * 111.00162 * 153.03639 * 13 3 2 15 15 C 1.50700 * 109.47341 * 174.45526 * 14 13 3 16 16 C 1.38383 * 120.14384 * 259.99540 * 15 14 13 17 17 C 1.38209 * 120.22271 * 180.02562 * 16 15 14 18 18 C 1.38383 * 120.21233 * 359.95312 * 17 16 15 19 19 C 1.38409 * 119.71230 * 0.02562 * 18 17 16 20 20 C 1.38426 * 120.14044 * 79.98061 * 15 14 13 21 21 O 1.36455 * 120.31365 * 0.09429 * 20 15 14 22 22 C 1.42918 * 115.91728 * 248.27452 * 21 20 15 23 23 C 1.52070 * 110.72987 * 275.59212 * 22 21 20 24 24 C 1.52061 * 112.37703 * 64.86713 * 23 22 21 25 25 O 1.36472 * 120.32682 * 180.02562 * 19 18 17 26 26 H 1.08997 * 109.46953 * 179.47300 * 1 2 3 27 27 H 1.09003 * 109.46730 * 299.46966 * 1 2 3 28 28 H 1.08995 * 109.47098 * 59.46881 * 1 2 3 29 29 H 1.09004 * 109.46878 * 240.00112 * 2 1 3 30 30 H 1.08997 * 109.47172 * 119.99751 * 2 1 3 31 31 H 0.97005 * 119.99698 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00618 * 29.07947 * 13 3 2 33 33 H 1.09007 * 109.47473 * 54.45521 * 14 13 3 34 34 H 1.09005 * 109.47154 * 294.45664 * 14 13 3 35 35 H 1.08006 * 119.89017 * 0.02562 * 16 15 14 36 36 H 1.08002 * 119.89086 * 179.97438 * 17 16 15 37 37 H 1.08009 * 120.14273 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.21864 * 35.94466 * 22 21 20 39 39 H 1.08997 * 109.21792 * 155.32830 * 22 21 20 40 40 H 1.08996 * 108.94257 * 304.09360 * 23 22 21 41 41 H 1.09006 * 108.86619 * 185.58141 * 23 22 21 42 42 H 1.09002 * 109.22015 * 174.77807 * 24 23 22 43 43 H 1.08999 * 109.21779 * 55.39867 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5959 1.9850 0.8345 5 6 3.5404 1.4448 0.1410 6 1 4.1546 1.8863 -0.6299 7 6 4.1291 0.8835 1.2542 8 7 5.4385 0.8851 1.3770 9 14 3.0668 0.1195 2.5874 10 1 2.8494 -1.3179 2.2841 11 1 3.7491 0.2507 3.8998 12 1 1.7576 0.8182 2.6382 13 7 1.6658 2.0942 -1.2623 14 6 1.5396 3.5472 -1.0874 15 6 1.2899 4.1944 -2.4253 16 6 2.3296 4.7993 -3.1094 17 6 2.1023 5.3938 -4.3363 18 6 0.8337 5.3871 -4.8890 19 6 -0.2083 4.7826 -4.2075 20 6 0.0196 4.1860 -2.9752 21 8 -1.0148 3.5943 -2.3104 22 6 -1.5409 2.4058 -2.9045 23 6 -2.5683 2.7471 -3.9724 24 6 -1.9552 3.4894 -5.1494 25 8 -1.4643 4.7682 -4.7411 26 1 -0.3633 -1.0276 -0.0095 27 1 -0.3633 0.5056 0.8947 28 1 -0.3633 0.5220 -0.8851 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8526 0.4905 2.1605 32 1 0.8151 1.6996 -1.6347 33 1 2.4604 3.9429 -0.6586 34 1 0.7059 3.7617 -0.4188 35 1 3.3220 4.8070 -2.6833 36 1 2.9176 5.8648 -4.8654 37 1 0.6573 5.8524 -5.8476 38 1 -0.7264 1.8401 -3.3572 39 1 -2.0143 1.7983 -2.1332 40 1 -3.3460 3.3691 -3.5292 41 1 -3.0207 1.8237 -4.3343 42 1 -2.7125 3.6257 -5.9215 43 1 -1.1317 2.9015 -5.5546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:41 Heat of formation + Delta-G solvation = -45.443303 kcal Electronic energy + Delta-G solvation = -24277.118295 eV Core-core repulsion = 20901.991764 eV Total energy + Delta-G solvation = -3375.126530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85074 -37.89028 -37.42224 -36.44311 -32.98461 -32.89805 -31.92186 -29.99359 -28.97226 -27.36156 -26.52785 -24.65595 -22.51469 -22.19096 -21.94627 -20.73891 -19.86060 -18.30244 -17.08762 -16.80695 -16.60690 -15.42974 -15.42264 -15.29624 -14.99202 -14.57239 -14.11591 -14.02461 -13.98053 -13.37134 -13.19813 -13.04023 -12.55852 -12.33805 -12.25337 -11.98084 -11.70192 -11.66176 -11.42017 -11.08662 -11.05300 -10.84695 -10.49716 -10.46189 -10.29718 -10.00586 -9.81253 -9.43484 -9.23759 -8.56785 -8.48571 -8.37073 -7.38054 -6.03991 -4.00773 1.22747 1.33247 3.25180 3.36565 3.38016 3.38227 3.48671 4.00934 4.40769 4.51051 4.58975 4.86809 4.96846 5.07617 5.13933 5.19946 5.23381 5.32766 5.35884 5.44234 5.47722 5.56882 5.63123 5.71868 5.79144 5.80318 5.90739 5.93952 6.03771 6.34266 6.38628 6.42479 6.47439 6.58927 6.64951 6.71259 6.78083 6.80506 7.14268 7.16495 7.64532 7.71311 7.93781 8.23230 8.75153 9.08217 9.59232 11.09345 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.004925 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.975439 B = 5684.245248 C = 6730.971635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.136 4.136 3 C 0.189 3.811 4 H 0.003 0.997 5 C -0.495 4.495 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.667 5.667 14 C 0.105 3.895 15 C -0.060 4.060 16 C -0.092 4.092 17 C -0.113 4.113 18 C -0.127 4.127 19 C 0.059 3.941 20 C 0.067 3.933 21 O -0.317 6.317 22 C 0.057 3.943 23 C -0.185 4.185 24 C 0.060 3.940 25 O -0.322 6.322 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.316 0.684 33 H 0.090 0.910 34 H 0.034 0.966 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 4.766 -12.283 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.081 3.919 4 H 0.020 0.980 5 C -0.533 4.533 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.298 5.298 14 C -0.024 4.024 15 C -0.061 4.061 16 C -0.111 4.111 17 C -0.131 4.131 18 C -0.146 4.146 19 C 0.015 3.985 20 C 0.022 3.978 21 O -0.233 6.233 22 C -0.018 4.018 23 C -0.223 4.223 24 C -0.015 4.015 25 O -0.239 6.239 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.517 4.941 -12.232 18.888 hybrid contribution -1.305 -0.820 1.113 1.901 sum -14.822 4.120 -11.119 18.982 Atomic orbital electron populations 1.21928 0.98275 1.00459 1.00773 1.22132 0.92910 1.00480 1.01853 1.19637 0.96985 0.89225 0.86078 0.97980 1.21022 0.89025 1.37482 1.05799 0.90035 1.24949 0.94741 0.95988 0.97726 1.69883 1.08922 1.45916 1.29249 0.86966 0.80843 0.79756 0.81319 1.20622 1.22471 1.19284 1.60600 1.37150 1.01179 1.30844 1.20752 1.01246 0.89769 0.90675 1.20085 0.90266 0.97547 0.98172 1.21149 0.99076 0.96498 0.94356 1.21067 0.96202 0.99891 0.95929 1.20987 0.91390 1.02095 1.00084 1.19089 0.85270 1.01723 0.92440 1.19014 0.87888 0.98790 0.92087 1.86350 1.47571 1.40403 1.48964 1.22655 0.96374 0.85978 0.96782 1.22457 1.00529 1.01892 0.97379 1.22600 0.98830 0.84085 0.95936 1.86345 1.28098 1.29698 1.79754 0.93536 0.93447 0.93441 0.91402 0.92663 0.92740 0.86636 0.89195 0.94769 0.84603 0.85263 0.85331 0.92040 0.88081 0.90049 0.89420 0.88241 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.76 37.16 0.36 -2.30 16 2 C -0.14 -2.88 5.00 -26.73 -0.13 -3.02 16 3 C 0.19 4.41 1.61 -68.87 -0.11 4.30 16 4 H 0.00 0.07 6.89 -51.93 -0.36 -0.29 16 5 C -0.49 -13.76 9.21 -34.44 -0.32 -14.08 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 7 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 8 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 9 Si 0.88 21.79 24.41 -169.99 -4.15 17.64 16 10 H -0.28 -6.71 6.82 56.52 0.39 -6.33 16 11 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 13 N -0.67 -13.62 6.26 -109.22 -0.68 -14.30 16 14 C 0.10 1.99 5.25 -4.98 -0.03 1.96 16 15 C -0.06 -0.99 5.45 -104.50 -0.57 -1.56 16 16 C -0.09 -1.37 9.67 -39.54 -0.38 -1.75 16 17 C -0.11 -1.41 10.04 -39.54 -0.40 -1.81 16 18 C -0.13 -1.62 10.01 -39.46 -0.39 -2.02 16 19 C 0.06 0.86 5.73 -39.31 -0.23 0.63 16 20 C 0.07 1.06 5.70 -39.31 -0.22 0.84 16 21 O -0.32 -4.96 9.42 -36.64 -0.35 -5.31 16 22 C 0.06 0.69 5.99 36.68 0.22 0.91 16 23 C -0.18 -1.78 5.92 -27.68 -0.16 -1.94 16 24 C 0.06 0.62 6.51 36.68 0.24 0.85 16 25 O -0.32 -4.43 10.16 -36.69 -0.37 -4.80 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.72 6.46 -51.93 -0.34 0.38 16 29 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.06 1.26 3.21 -51.93 -0.17 1.09 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.32 5.82 5.75 -39.29 -0.23 5.60 16 33 H 0.09 1.82 7.86 -51.93 -0.41 1.41 16 34 H 0.03 0.66 7.87 -51.93 -0.41 0.25 16 35 H 0.14 1.96 8.04 -52.48 -0.42 1.54 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 38 H 0.06 0.75 7.69 -51.93 -0.40 0.35 16 39 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.57 7.93 -51.93 -0.41 0.16 16 LS Contribution 337.15 15.07 5.08 5.08 Total: -1.00 -31.67 337.15 -8.46 -40.14 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.55 Total: 5.38 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -2.22 Total: -17.17 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.09 Total: -40.95 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.72 Total: -10.11 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.15 Total: 17.64 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.67 -8.46 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.305 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds