Wall clock time and date at job start Tue Mar 31 2020 07:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47168 * 2 1 4 4 H 1.08995 * 109.47187 * 54.30138 * 3 2 1 5 5 C 1.50691 * 109.47065 * 174.30518 * 3 2 1 6 6 H 1.08001 * 120.00451 * 120.00320 * 5 3 2 7 7 C 1.37878 * 120.00237 * 299.99432 * 5 3 2 8 8 N 1.31511 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99633 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47329 * 89.99824 * 9 7 5 11 11 H 1.48496 * 109.47142 * 209.99461 * 9 7 5 12 12 H 1.48491 * 109.47204 * 329.99625 * 9 7 5 13 13 N 1.46900 * 109.46860 * 294.30548 * 3 2 1 14 14 C 1.46894 * 111.00162 * 153.03639 * 13 3 2 15 15 C 1.50700 * 109.47341 * 174.45526 * 14 13 3 16 16 C 1.38383 * 120.14384 * 259.99540 * 15 14 13 17 17 C 1.38209 * 120.22271 * 180.02562 * 16 15 14 18 18 C 1.38383 * 120.21233 * 359.95312 * 17 16 15 19 19 C 1.38409 * 119.71230 * 0.02562 * 18 17 16 20 20 C 1.38426 * 120.14044 * 79.98061 * 15 14 13 21 21 O 1.36455 * 120.31365 * 0.09429 * 20 15 14 22 22 C 1.42918 * 115.91728 * 248.27452 * 21 20 15 23 23 C 1.52070 * 110.72987 * 275.59212 * 22 21 20 24 24 C 1.52061 * 112.37703 * 64.86713 * 23 22 21 25 25 O 1.36472 * 120.32682 * 180.02562 * 19 18 17 26 26 H 1.08997 * 109.46953 * 179.47300 * 1 2 3 27 27 H 1.09003 * 109.46730 * 299.46966 * 1 2 3 28 28 H 1.08995 * 109.47098 * 59.46881 * 1 2 3 29 29 H 1.09004 * 109.46878 * 240.00112 * 2 1 3 30 30 H 1.08997 * 109.47172 * 119.99751 * 2 1 3 31 31 H 0.97005 * 119.99698 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00618 * 29.07947 * 13 3 2 33 33 H 1.09007 * 109.47473 * 54.45521 * 14 13 3 34 34 H 1.09005 * 109.47154 * 294.45664 * 14 13 3 35 35 H 1.08006 * 119.89017 * 0.02562 * 16 15 14 36 36 H 1.08002 * 119.89086 * 179.97438 * 17 16 15 37 37 H 1.08009 * 120.14273 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.21864 * 35.94466 * 22 21 20 39 39 H 1.08997 * 109.21792 * 155.32830 * 22 21 20 40 40 H 1.08996 * 108.94257 * 304.09360 * 23 22 21 41 41 H 1.09006 * 108.86619 * 185.58141 * 23 22 21 42 42 H 1.09002 * 109.22015 * 174.77807 * 24 23 22 43 43 H 1.08999 * 109.21779 * 55.39867 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5959 1.9850 0.8345 5 6 3.5404 1.4448 0.1410 6 1 4.1546 1.8863 -0.6299 7 6 4.1291 0.8835 1.2542 8 7 5.4385 0.8851 1.3770 9 14 3.0668 0.1195 2.5874 10 1 2.8494 -1.3179 2.2841 11 1 3.7491 0.2507 3.8998 12 1 1.7576 0.8182 2.6382 13 7 1.6658 2.0942 -1.2623 14 6 1.5396 3.5472 -1.0874 15 6 1.2899 4.1944 -2.4253 16 6 2.3296 4.7993 -3.1094 17 6 2.1023 5.3938 -4.3363 18 6 0.8337 5.3871 -4.8890 19 6 -0.2083 4.7826 -4.2075 20 6 0.0196 4.1860 -2.9752 21 8 -1.0148 3.5943 -2.3104 22 6 -1.5409 2.4058 -2.9045 23 6 -2.5683 2.7471 -3.9724 24 6 -1.9552 3.4894 -5.1494 25 8 -1.4643 4.7682 -4.7411 26 1 -0.3633 -1.0276 -0.0095 27 1 -0.3633 0.5056 0.8947 28 1 -0.3633 0.5220 -0.8851 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8526 0.4905 2.1605 32 1 0.8151 1.6996 -1.6347 33 1 2.4604 3.9429 -0.6586 34 1 0.7059 3.7617 -0.4188 35 1 3.3220 4.8070 -2.6833 36 1 2.9176 5.8648 -4.8654 37 1 0.6573 5.8524 -5.8476 38 1 -0.7264 1.8401 -3.3572 39 1 -2.0143 1.7983 -2.1332 40 1 -3.3460 3.3691 -3.5292 41 1 -3.0207 1.8237 -4.3343 42 1 -2.7125 3.6257 -5.9215 43 1 -1.1317 2.9015 -5.5546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:41 Heat of formation + Delta-G solvation = -66.791081 kcal Electronic energy + Delta-G solvation = -24278.044004 eV Core-core repulsion = 20901.991764 eV Total energy + Delta-G solvation = -3376.052239 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.90200 -39.08243 -38.47739 -38.00876 -34.65990 -33.81669 -33.77699 -31.31986 -30.03636 -29.14612 -27.49977 -26.16412 -24.21633 -23.19151 -22.99477 -21.85503 -21.70635 -19.32754 -18.86999 -18.10323 -17.72868 -17.09691 -16.54831 -16.33843 -16.29896 -15.93549 -15.74896 -15.18812 -15.01904 -14.85850 -14.57375 -14.18619 -14.10059 -13.81629 -13.63830 -13.29965 -13.03239 -12.93908 -12.74670 -12.59117 -12.41341 -12.18221 -12.08226 -11.78835 -11.67579 -11.36692 -11.28773 -11.24343 -10.85072 -10.68154 -9.70008 -9.44864 -9.09066 -8.26812 -6.28230 0.15202 0.20957 1.27590 1.34025 1.43484 2.31492 2.35305 2.52085 2.92120 3.05924 3.49216 3.73218 3.80907 3.88613 3.97641 4.18149 4.26171 4.27393 4.30609 4.31693 4.38876 4.39976 4.44424 4.47899 4.57713 4.70842 4.75922 4.79618 4.84670 4.96707 5.03325 5.05457 5.09537 5.15656 5.28346 5.36931 5.40540 5.56496 5.66772 5.69819 6.03706 6.16809 6.43555 6.59686 6.77576 6.87975 7.36011 8.90306 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.004925 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.975439 B = 5684.245248 C = 6730.971635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.194 3.806 4 H -0.008 1.008 5 C -0.498 4.498 6 H 0.036 0.964 7 C 0.011 3.989 8 N -0.949 5.949 9 Si 0.945 3.055 10 H -0.263 1.263 11 H -0.299 1.299 12 H -0.252 1.252 13 N -0.670 5.670 14 C 0.114 3.886 15 C -0.084 4.084 16 C -0.107 4.107 17 C -0.102 4.102 18 C -0.120 4.120 19 C 0.052 3.948 20 C 0.058 3.942 21 O -0.339 6.339 22 C 0.046 3.954 23 C -0.179 4.179 24 C 0.052 3.948 25 O -0.336 6.336 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.331 0.669 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.129 0.871 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.056 0.944 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.129 0.871 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.012 4.226 -13.753 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.085 3.915 4 H 0.009 0.991 5 C -0.536 4.536 6 H 0.054 0.946 7 C -0.186 4.186 8 N -0.590 5.590 9 Si 0.772 3.228 10 H -0.189 1.189 11 H -0.227 1.227 12 H -0.176 1.176 13 N -0.302 5.302 14 C -0.015 4.015 15 C -0.085 4.085 16 C -0.126 4.126 17 C -0.120 4.120 18 C -0.138 4.138 19 C 0.008 3.992 20 C 0.013 3.987 21 O -0.256 6.256 22 C -0.028 4.028 23 C -0.216 4.216 24 C -0.022 4.022 25 O -0.253 6.253 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.147 0.853 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.460 4.398 -13.730 21.881 hybrid contribution -0.387 -0.585 1.432 1.595 sum -16.847 3.813 -12.298 21.204 Atomic orbital electron populations 1.21860 0.94501 1.02691 1.01622 1.22018 0.96290 0.97994 1.01082 1.19430 0.93922 0.91176 0.86990 0.99059 1.21254 0.91396 1.36420 1.04568 0.94605 1.25763 0.95889 0.96686 1.00270 1.70040 1.11018 1.47653 1.30337 0.85912 0.79460 0.79689 0.77725 1.18873 1.22729 1.17622 1.60436 1.38230 1.02089 1.29423 1.20556 0.99560 0.88927 0.92445 1.19919 0.91640 0.99424 0.97549 1.21238 0.98446 0.97333 0.95585 1.21367 0.97325 0.98627 0.94695 1.21347 0.90748 1.00842 1.00857 1.19264 0.86205 1.01536 0.92146 1.19077 0.87523 0.99384 0.92673 1.86299 1.47548 1.41651 1.50103 1.22941 0.96833 0.84984 0.98033 1.22431 0.99484 1.03276 0.96438 1.22920 0.99618 0.82888 0.96817 1.86316 1.27621 1.31743 1.79625 0.90631 0.93430 0.91812 0.91684 0.93957 0.92662 0.84988 0.91861 0.95286 0.85329 0.82002 0.82411 0.92575 0.86669 0.90518 0.86132 0.85292 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.76 71.98 0.70 -3.90 16 2 C -0.14 -5.59 5.00 30.60 0.15 -5.43 16 3 C 0.19 9.15 1.61 44.17 0.07 9.22 16 4 H -0.01 -0.40 6.89 -2.39 -0.02 -0.41 16 5 C -0.50 -28.88 9.21 25.60 0.24 -28.64 16 6 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 7 C 0.01 0.62 5.45 84.66 0.46 1.09 16 8 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 9 Si 0.94 45.33 24.41 68.60 1.67 47.00 16 10 H -0.26 -11.85 6.82 99.48 0.68 -11.18 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.25 -11.34 6.53 99.48 0.65 -10.69 16 13 N -0.67 -27.90 6.26 -499.47 -3.13 -31.02 16 14 C 0.11 4.53 5.25 85.56 0.45 4.98 16 15 C -0.08 -2.87 5.45 -19.78 -0.11 -2.98 16 16 C -0.11 -3.24 9.67 22.30 0.22 -3.03 16 17 C -0.10 -2.39 10.04 22.30 0.22 -2.17 16 18 C -0.12 -2.77 10.01 22.35 0.22 -2.54 16 19 C 0.05 1.45 5.73 22.44 0.13 1.58 16 20 C 0.06 1.82 5.70 22.45 0.13 1.95 16 21 O -0.34 -10.38 9.42 -84.04 -0.79 -11.17 16 22 C 0.05 1.02 5.99 71.68 0.43 1.45 16 23 C -0.18 -2.92 5.92 29.98 0.18 -2.74 16 24 C 0.05 0.90 6.51 71.67 0.47 1.37 16 25 O -0.34 -8.47 10.16 -84.23 -0.86 -9.32 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.74 6.46 -2.39 -0.02 1.72 16 29 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.04 1.85 3.21 -2.39 -0.01 1.84 16 31 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 32 H 0.33 12.04 5.75 -89.69 -0.52 11.52 16 33 H 0.06 2.77 7.86 -2.38 -0.02 2.75 16 34 H 0.03 1.16 7.87 -2.38 -0.02 1.14 16 35 H 0.13 3.95 8.04 -2.91 -0.02 3.92 16 36 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.06 1.28 7.69 -2.39 -0.02 1.26 16 39 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.02 7.93 -2.39 -0.02 1.00 16 Total: -1.00 -71.83 337.15 1.56 -70.26 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.40 Total: 23.80 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.96 Total: -29.81 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -2.83 Total: -90.77 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.65 Total: -20.49 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.67 Total: 47.00 kcal Total: -71.83 1.56 -70.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.472 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds