Wall clock time and date at job start Tue Mar 31 2020 07:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46890 * 2 1 4 4 H 1.08997 * 109.47403 * 174.08850 * 3 2 1 5 5 C 1.50704 * 109.47338 * 54.08962 * 3 2 1 6 6 H 1.08001 * 120.00082 * 240.00034 * 5 3 2 7 7 C 1.37874 * 119.99825 * 59.99420 * 5 3 2 8 8 N 1.31519 * 120.00233 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47040 * 60.00359 * 9 7 5 11 11 H 1.48500 * 109.46988 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47072 * 300.00364 * 9 7 5 13 13 N 1.46905 * 109.47752 * 294.08851 * 3 2 1 14 14 C 1.46903 * 110.99965 * 275.76571 * 13 3 2 15 15 C 1.50699 * 109.47027 * 176.23249 * 14 13 3 16 16 C 1.38384 * 120.14076 * 259.99850 * 15 14 13 17 17 C 1.38213 * 120.22262 * 179.97438 * 16 15 14 18 18 C 1.38395 * 120.20883 * 359.97438 * 17 16 15 19 19 C 1.38414 * 119.71303 * 0.02562 * 18 17 16 20 20 C 1.38425 * 120.14486 * 80.02019 * 15 14 13 21 21 O 1.36463 * 120.30664 * 0.09162 * 20 15 14 22 22 C 1.42907 * 115.91940 * 248.30946 * 21 20 15 23 23 C 1.52067 * 110.73891 * 275.60361 * 22 21 20 24 24 C 1.52056 * 112.37956 * 64.85961 * 23 22 21 25 25 O 1.36463 * 120.32419 * 180.02562 * 19 18 17 26 26 H 1.09000 * 109.47243 * 298.55852 * 1 2 3 27 27 H 1.09002 * 109.47026 * 58.55955 * 1 2 3 28 28 H 1.09002 * 109.47178 * 178.55489 * 1 2 3 29 29 H 1.09002 * 109.46949 * 240.00268 * 2 1 3 30 30 H 1.08993 * 109.47271 * 119.99972 * 2 1 3 31 31 H 0.96993 * 120.00310 * 179.97438 * 8 7 5 32 32 H 1.00907 * 110.99265 * 39.71347 * 13 3 2 33 33 H 1.09002 * 109.47362 * 56.22987 * 14 13 3 34 34 H 1.08996 * 109.46691 * 296.22810 * 14 13 3 35 35 H 1.08001 * 119.89325 * 359.97438 * 16 15 14 36 36 H 1.08001 * 119.89343 * 179.97438 * 17 16 15 37 37 H 1.08000 * 120.13567 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.21681 * 35.95504 * 22 21 20 39 39 H 1.09002 * 109.21846 * 155.33001 * 22 21 20 40 40 H 1.09003 * 108.93892 * 304.09066 * 23 22 21 41 41 H 1.08999 * 108.86830 * 185.58191 * 23 22 21 42 42 H 1.08994 * 109.21866 * 174.77805 * 24 23 22 43 43 H 1.09005 * 109.21033 * 55.40354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1058 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0670 0.9618 7 6 1.6308 1.7666 2.4449 8 7 2.3702 0.7036 2.6751 9 14 0.8639 2.6976 3.8713 10 1 -0.6141 2.6945 3.7269 11 1 1.2382 2.0407 5.1494 12 1 1.3583 4.0978 3.8714 13 7 1.6703 2.0927 -1.2644 14 6 2.6513 1.7943 -2.3163 15 6 2.1920 2.3995 -3.6178 16 6 1.5710 1.6105 -4.5701 17 6 1.1486 2.1639 -5.7641 18 6 1.3434 3.5109 -6.0148 19 6 1.9642 4.3029 -5.0643 20 6 2.3897 3.7469 -3.8660 21 8 3.0028 4.5356 -2.9363 22 6 2.1766 5.5178 -2.3079 23 6 2.0938 6.7757 -3.1584 24 6 1.4009 6.5301 -4.4894 25 8 2.1622 5.6326 -5.2983 26 1 -0.3634 0.4913 0.9026 27 1 -0.3633 0.5361 -0.8768 28 1 -0.3633 -1.0274 -0.0259 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.5176 0.4032 3.5854 32 1 0.7405 1.8246 -1.5504 33 1 2.7444 0.7143 -2.4306 34 1 3.6183 2.2153 -2.0412 35 1 1.4159 0.5588 -4.3798 36 1 0.6650 1.5431 -6.5038 37 1 1.0125 3.9422 -6.9480 38 1 1.1751 5.1099 -2.1712 39 1 2.5969 5.7706 -1.3345 40 1 3.1029 7.1417 -3.3479 41 1 1.5414 7.5375 -2.6082 42 1 1.2869 7.4782 -5.0149 43 1 0.4159 6.1002 -4.3071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:44 Heat of formation + Delta-G solvation = -52.177472 kcal Electronic energy + Delta-G solvation = -24171.759791 eV Core-core repulsion = 20796.341246 eV Total energy + Delta-G solvation = -3375.418546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71395 -37.86232 -37.19636 -36.27787 -32.98998 -32.75623 -31.26453 -29.57902 -28.91009 -26.68362 -26.24241 -24.39583 -23.18561 -21.98965 -21.87815 -20.76856 -19.26649 -18.13371 -16.96310 -16.77938 -16.00085 -15.35761 -15.19876 -15.01787 -14.77045 -14.41490 -13.99980 -13.79242 -13.65475 -13.14689 -12.91907 -12.85207 -12.39181 -12.32890 -12.03982 -11.82546 -11.64234 -11.32967 -10.99098 -10.90464 -10.79116 -10.60109 -10.52475 -10.24821 -9.99322 -9.84370 -9.63744 -9.53726 -8.98999 -8.53080 -8.33433 -8.29764 -7.19225 -5.96484 -3.97957 1.24867 1.33974 3.33232 3.38227 3.39924 3.42217 3.66689 4.13349 4.44675 4.72764 4.77663 4.95209 5.01866 5.14347 5.32479 5.35186 5.36495 5.42752 5.47267 5.54636 5.65310 5.69274 5.88597 6.00446 6.02812 6.12361 6.31853 6.34752 6.37714 6.39168 6.46827 6.57665 6.70377 6.73205 6.90011 7.28175 7.29686 7.31771 7.50845 7.70803 7.82040 7.88957 8.29506 8.55723 8.63156 9.06594 9.65324 11.10616 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.004920 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.094900 B = 5689.776850 C = 6771.268600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.034 0.966 5 C -0.486 4.486 6 H 0.059 0.941 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.674 5.674 14 C 0.101 3.899 15 C -0.070 4.070 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.126 4.126 19 C 0.057 3.943 20 C 0.092 3.908 21 O -0.309 6.309 22 C 0.071 3.929 23 C -0.188 4.188 24 C 0.062 3.938 25 O -0.323 6.323 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.021 0.979 29 H 0.010 0.990 30 H 0.092 0.908 31 H 0.259 0.741 32 H 0.324 0.676 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 6.277 -14.806 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.525 4.525 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.304 5.304 14 C -0.028 4.028 15 C -0.071 4.071 16 C -0.130 4.130 17 C -0.135 4.135 18 C -0.145 4.145 19 C 0.013 3.987 20 C 0.047 3.953 21 O -0.225 6.225 22 C -0.004 4.004 23 C -0.226 4.226 24 C -0.013 4.013 25 O -0.240 6.240 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.029 0.971 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.587 6.870 -14.517 16.267 hybrid contribution -0.903 -0.434 0.754 1.254 sum -3.490 6.436 -13.763 15.589 Atomic orbital electron populations 1.21560 0.97717 0.97930 1.01210 1.22108 0.94975 1.01235 1.00193 1.19201 0.96166 0.88539 0.85197 0.94837 1.20977 1.30427 1.11422 0.89696 0.92254 1.24896 0.95596 0.95172 0.98627 1.69871 1.39179 1.24123 1.20377 0.86654 0.79551 0.80033 0.81681 1.20468 1.21524 1.20410 1.60937 1.03497 1.63054 1.02960 1.20784 0.97866 0.96349 0.87824 1.20147 0.97370 0.92626 0.96929 1.21082 0.98560 0.99988 0.93357 1.20970 1.00771 0.94339 0.97406 1.20978 0.99594 0.94143 0.99786 1.19187 1.00494 0.84525 0.94511 1.18949 0.96961 0.90665 0.88745 1.86326 1.35120 1.47426 1.53633 1.22500 0.96144 0.86464 0.95284 1.22531 1.03130 0.99981 0.96965 1.22585 0.93663 0.93315 0.91751 1.86296 1.64854 1.12509 1.60325 0.91560 0.95240 0.95965 0.97084 0.88972 0.93087 0.85828 0.95292 0.90277 0.85488 0.85520 0.85395 0.91803 0.87782 0.90256 0.89510 0.88395 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.39 37.16 0.35 -2.31 16 2 C -0.15 -3.34 5.50 -26.73 -0.15 -3.49 16 3 C 0.22 5.24 2.33 -68.86 -0.16 5.08 16 4 H 0.03 0.91 7.86 -51.93 -0.41 0.51 16 5 C -0.49 -12.85 7.35 -34.44 -0.25 -13.10 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.55 5.22 -17.82 -0.09 1.46 16 8 N -0.90 -25.01 11.39 55.43 0.63 -24.38 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -13.93 6.24 -109.22 -0.68 -14.61 16 14 C 0.10 1.87 5.29 -4.97 -0.03 1.84 16 15 C -0.07 -1.14 5.37 -104.50 -0.56 -1.70 16 16 C -0.11 -1.53 9.67 -39.54 -0.38 -1.91 16 17 C -0.12 -1.39 10.04 -39.53 -0.40 -1.79 16 18 C -0.13 -1.61 10.01 -39.46 -0.39 -2.01 16 19 C 0.06 0.86 5.73 -39.31 -0.23 0.63 16 20 C 0.09 1.54 5.70 -39.31 -0.22 1.32 16 21 O -0.31 -5.49 9.42 -36.66 -0.35 -5.84 16 22 C 0.07 1.06 6.51 36.68 0.24 1.30 16 23 C -0.19 -2.18 5.92 -27.69 -0.16 -2.35 16 24 C 0.06 0.70 6.51 36.68 0.24 0.94 16 25 O -0.32 -4.71 10.15 -36.66 -0.37 -5.08 16 26 H 0.07 1.53 7.05 -51.93 -0.37 1.17 16 27 H 0.03 0.56 6.42 -51.93 -0.33 0.22 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.23 7.24 -51.93 -0.38 -0.15 16 30 H 0.09 2.39 6.25 -51.93 -0.32 2.06 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.32 6.48 6.55 -39.29 -0.26 6.23 16 33 H 0.03 0.52 7.10 -51.93 -0.37 0.16 16 34 H 0.08 1.59 7.85 -51.93 -0.41 1.18 16 35 H 0.13 1.55 8.04 -52.49 -0.42 1.13 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 39 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.62 7.93 -51.93 -0.41 0.21 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -28.89 341.78 -9.43 -38.32 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.59 Total: 6.49 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -2.20 Total: -16.09 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: -0.05 Total: -38.99 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.72 Total: -10.92 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.89 -9.43 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.859 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds