Wall clock time and date at job start Tue Mar 31 2020 07:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46890 * 2 1 4 4 H 1.08997 * 109.47403 * 174.08850 * 3 2 1 5 5 C 1.50704 * 109.47338 * 54.08962 * 3 2 1 6 6 H 1.08001 * 120.00082 * 240.00034 * 5 3 2 7 7 C 1.37874 * 119.99825 * 59.99420 * 5 3 2 8 8 N 1.31519 * 120.00233 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47040 * 60.00359 * 9 7 5 11 11 H 1.48500 * 109.46988 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47072 * 300.00364 * 9 7 5 13 13 N 1.46905 * 109.47752 * 294.08851 * 3 2 1 14 14 C 1.46903 * 110.99965 * 275.76571 * 13 3 2 15 15 C 1.50699 * 109.47027 * 176.23249 * 14 13 3 16 16 C 1.38384 * 120.14076 * 259.99850 * 15 14 13 17 17 C 1.38213 * 120.22262 * 179.97438 * 16 15 14 18 18 C 1.38395 * 120.20883 * 359.97438 * 17 16 15 19 19 C 1.38414 * 119.71303 * 0.02562 * 18 17 16 20 20 C 1.38425 * 120.14486 * 80.02019 * 15 14 13 21 21 O 1.36463 * 120.30664 * 0.09162 * 20 15 14 22 22 C 1.42907 * 115.91940 * 248.30946 * 21 20 15 23 23 C 1.52067 * 110.73891 * 275.60361 * 22 21 20 24 24 C 1.52056 * 112.37956 * 64.85961 * 23 22 21 25 25 O 1.36463 * 120.32419 * 180.02562 * 19 18 17 26 26 H 1.09000 * 109.47243 * 298.55852 * 1 2 3 27 27 H 1.09002 * 109.47026 * 58.55955 * 1 2 3 28 28 H 1.09002 * 109.47178 * 178.55489 * 1 2 3 29 29 H 1.09002 * 109.46949 * 240.00268 * 2 1 3 30 30 H 1.08993 * 109.47271 * 119.99972 * 2 1 3 31 31 H 0.96993 * 120.00310 * 179.97438 * 8 7 5 32 32 H 1.00907 * 110.99265 * 39.71347 * 13 3 2 33 33 H 1.09002 * 109.47362 * 56.22987 * 14 13 3 34 34 H 1.08996 * 109.46691 * 296.22810 * 14 13 3 35 35 H 1.08001 * 119.89325 * 359.97438 * 16 15 14 36 36 H 1.08001 * 119.89343 * 179.97438 * 17 16 15 37 37 H 1.08000 * 120.13567 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.21681 * 35.95504 * 22 21 20 39 39 H 1.09002 * 109.21846 * 155.33001 * 22 21 20 40 40 H 1.09003 * 108.93892 * 304.09066 * 23 22 21 41 41 H 1.08999 * 108.86830 * 185.58191 * 23 22 21 42 42 H 1.08994 * 109.21866 * 174.77805 * 24 23 22 43 43 H 1.09005 * 109.21033 * 55.40354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1058 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0670 0.9618 7 6 1.6308 1.7666 2.4449 8 7 2.3702 0.7036 2.6751 9 14 0.8639 2.6976 3.8713 10 1 -0.6141 2.6945 3.7269 11 1 1.2382 2.0407 5.1494 12 1 1.3583 4.0978 3.8714 13 7 1.6703 2.0927 -1.2644 14 6 2.6513 1.7943 -2.3163 15 6 2.1920 2.3995 -3.6178 16 6 1.5710 1.6105 -4.5701 17 6 1.1486 2.1639 -5.7641 18 6 1.3434 3.5109 -6.0148 19 6 1.9642 4.3029 -5.0643 20 6 2.3897 3.7469 -3.8660 21 8 3.0028 4.5356 -2.9363 22 6 2.1766 5.5178 -2.3079 23 6 2.0938 6.7757 -3.1584 24 6 1.4009 6.5301 -4.4894 25 8 2.1622 5.6326 -5.2983 26 1 -0.3634 0.4913 0.9026 27 1 -0.3633 0.5361 -0.8768 28 1 -0.3633 -1.0274 -0.0259 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.5176 0.4032 3.5854 32 1 0.7405 1.8246 -1.5504 33 1 2.7444 0.7143 -2.4306 34 1 3.6183 2.2153 -2.0412 35 1 1.4159 0.5588 -4.3798 36 1 0.6650 1.5431 -6.5038 37 1 1.0125 3.9422 -6.9480 38 1 1.1751 5.1099 -2.1712 39 1 2.5969 5.7706 -1.3345 40 1 3.1029 7.1417 -3.3479 41 1 1.5414 7.5375 -2.6082 42 1 1.2869 7.4782 -5.0149 43 1 0.4159 6.1002 -4.3071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:43 Heat of formation + Delta-G solvation = -69.354414 kcal Electronic energy + Delta-G solvation = -24172.504639 eV Core-core repulsion = 20796.341246 eV Total energy + Delta-G solvation = -3376.163394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81897 -39.07623 -38.35617 -37.92187 -34.71166 -33.77667 -33.00078 -31.05004 -29.99492 -28.41444 -27.41899 -25.98281 -25.00013 -23.08498 -22.95633 -21.94120 -21.14858 -19.26502 -18.27150 -18.05271 -17.63804 -16.77680 -16.52360 -16.29407 -16.12530 -15.79212 -15.41194 -15.13681 -14.93016 -14.54704 -14.43310 -14.10105 -14.00414 -13.76859 -13.48548 -13.10072 -12.97284 -12.77773 -12.63642 -12.47450 -12.42615 -12.03391 -11.93139 -11.74527 -11.59851 -11.39151 -11.28512 -10.99518 -10.76200 -10.41735 -9.66557 -9.39648 -8.90670 -8.03732 -6.12012 0.18600 0.23840 1.43876 1.44764 1.51946 2.38869 2.47239 2.60615 3.01589 3.25232 3.64114 3.77390 3.84030 3.91823 4.10661 4.25216 4.30452 4.34442 4.45468 4.46891 4.49897 4.55703 4.57847 4.65819 4.70402 4.76707 4.82459 4.87235 5.02047 5.11867 5.12478 5.30412 5.35926 5.41098 5.44771 5.54846 5.69933 5.71402 5.75815 5.85110 6.24840 6.33020 6.66710 6.69684 6.85108 7.00030 7.55398 9.01649 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.004920 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.094900 B = 5689.776850 C = 6771.268600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 C 0.223 3.777 4 H -0.008 1.008 5 C -0.495 4.495 6 H 0.052 0.948 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.672 5.672 14 C 0.111 3.889 15 C -0.093 4.093 16 C -0.111 4.111 17 C -0.102 4.102 18 C -0.119 4.119 19 C 0.045 3.955 20 C 0.067 3.933 21 O -0.339 6.339 22 C 0.066 3.934 23 C -0.180 4.180 24 C 0.057 3.943 25 O -0.337 6.337 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.026 0.974 30 H 0.060 0.940 31 H 0.258 0.742 32 H 0.330 0.670 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.131 0.869 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 6.781 -16.976 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.178 4.178 3 C 0.115 3.885 4 H 0.010 0.990 5 C -0.534 4.534 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.303 5.303 14 C -0.018 4.018 15 C -0.094 4.094 16 C -0.130 4.130 17 C -0.120 4.120 18 C -0.138 4.138 19 C 0.001 3.999 20 C 0.022 3.978 21 O -0.256 6.256 22 C -0.008 4.008 23 C -0.218 4.218 24 C -0.017 4.017 25 O -0.254 6.254 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.149 0.851 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.161 0.839 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.133 0.867 42 H 0.148 0.852 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.615 7.383 -16.703 18.836 hybrid contribution -0.244 -0.574 1.355 1.491 sum -4.859 6.810 -15.348 17.480 Atomic orbital electron populations 1.21433 0.95785 0.99351 1.00830 1.21945 0.96593 0.99887 0.99365 1.18933 0.93449 0.89621 0.86497 0.99020 1.21188 1.30213 1.11279 0.90747 0.92990 1.25578 0.96025 0.95904 1.00904 1.70011 1.40223 1.25325 1.20632 0.85734 0.79108 0.78740 0.78757 1.19541 1.21393 1.20228 1.60757 1.04233 1.62778 1.02504 1.20581 0.96121 0.96504 0.88574 1.20019 0.99676 0.93074 0.96587 1.21307 0.97695 1.00547 0.93426 1.21383 0.99200 0.94326 0.97081 1.21365 0.98114 0.94304 0.99998 1.19399 1.00867 0.85201 0.94408 1.19208 0.98231 0.90826 0.89499 1.86265 1.36522 1.48371 1.54423 1.22580 0.94933 0.87548 0.95759 1.22472 1.03491 0.98633 0.97165 1.22837 0.93233 0.94089 0.91540 1.86265 1.65780 1.12542 1.60857 0.94025 0.93292 0.93743 0.95499 0.92111 0.93280 0.85091 0.94840 0.93131 0.83884 0.81515 0.82569 0.93029 0.88842 0.90749 0.86676 0.85153 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.39 71.98 0.68 -4.11 16 2 C -0.14 -6.43 5.50 30.59 0.17 -6.26 16 3 C 0.22 11.21 2.33 44.17 0.10 11.31 16 4 H -0.01 -0.47 7.86 -2.39 -0.02 -0.49 16 5 C -0.50 -26.86 7.35 25.60 0.19 -26.67 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 7 C 0.01 0.76 5.22 84.65 0.44 1.21 16 8 N -0.92 -52.88 11.39 21.45 0.24 -52.64 16 9 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.67 -28.50 6.24 -499.46 -3.12 -31.62 16 14 C 0.11 4.27 5.29 85.56 0.45 4.72 16 15 C -0.09 -3.02 5.37 -19.79 -0.11 -3.13 16 16 C -0.11 -2.80 9.67 22.30 0.22 -2.59 16 17 C -0.10 -2.04 10.04 22.30 0.22 -1.82 16 18 C -0.12 -2.65 10.01 22.35 0.22 -2.43 16 19 C 0.05 1.30 5.73 22.44 0.13 1.43 16 20 C 0.07 2.26 5.70 22.45 0.13 2.39 16 21 O -0.34 -12.58 9.42 -84.13 -0.79 -13.38 16 22 C 0.07 2.04 6.51 71.67 0.47 2.51 16 23 C -0.18 -4.02 5.92 29.98 0.18 -3.84 16 24 C 0.06 1.19 6.51 71.67 0.47 1.66 16 25 O -0.34 -9.30 10.15 -84.13 -0.85 -10.15 16 26 H 0.04 1.90 7.05 -2.39 -0.02 1.88 16 27 H 0.05 1.79 6.42 -2.39 -0.02 1.77 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 1.13 7.24 -2.39 -0.02 1.11 16 30 H 0.06 3.23 6.25 -2.39 -0.01 3.22 16 31 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.33 13.17 6.55 -89.69 -0.59 12.58 16 33 H 0.03 1.23 7.10 -2.39 -0.02 1.21 16 34 H 0.05 2.19 7.85 -2.39 -0.02 2.17 16 35 H 0.14 3.08 8.04 -2.91 -0.02 3.06 16 36 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.05 1.66 7.93 -2.39 -0.02 1.64 16 39 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.20 7.93 -2.38 -0.02 1.18 16 Total: -1.00 -65.00 341.78 1.88 -63.13 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.42 Total: 24.57 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 3.95 Total: -25.62 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.87 Total: -84.26 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -1.65 Total: -23.53 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -65.00 1.88 -63.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.229 kcal (2) G-P(sol) polarization free energy of solvation -65.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds