Wall clock time and date at job start Tue Mar 31 2020 07:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46977 * 2 1 4 4 H 1.09006 * 109.47036 * 304.99551 * 3 2 1 5 5 C 1.52992 * 109.47514 * 64.99812 * 3 2 1 6 6 C 1.50706 * 109.46848 * 185.00065 * 3 2 1 7 7 O 1.21286 * 120.00189 * 359.97438 * 6 3 2 8 8 N 1.34773 * 119.99707 * 179.97438 * 6 3 2 9 9 C 1.39921 * 119.99939 * 185.26895 * 8 6 3 10 10 C 1.38929 * 120.04357 * 213.33934 * 9 8 6 11 11 C 1.38114 * 120.04228 * 179.97438 * 10 9 8 12 12 C 1.38213 * 120.12515 * 359.67937 * 11 10 9 13 13 C 1.38767 * 120.08451 * 0.59615 * 12 11 10 14 14 O 1.35893 * 120.02305 * 179.70329 * 13 12 11 15 15 C 1.42901 * 117.00205 * 359.72538 * 14 13 12 16 16 C 1.52994 * 109.47193 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47143 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99804 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00142 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99920 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99894 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47631 * 89.99381 * 21 19 17 23 23 H 1.48498 * 109.47013 * 209.99647 * 21 19 17 24 24 H 1.48507 * 109.47095 * 329.99380 * 21 19 17 25 25 C 1.38628 * 119.95529 * 359.42663 * 13 12 11 26 26 H 1.08993 * 109.46709 * 60.00166 * 1 2 3 27 27 H 1.08999 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47022 * 300.00203 * 1 2 3 29 29 H 1.09000 * 109.47022 * 239.99797 * 2 1 3 30 30 H 1.09000 * 109.46906 * 119.99464 * 2 1 3 31 31 H 1.08998 * 109.47489 * 300.00103 * 5 3 2 32 32 H 1.09006 * 109.47181 * 59.99828 * 5 3 2 33 33 H 1.09004 * 109.47546 * 179.97438 * 5 3 2 34 34 H 0.97006 * 120.00285 * 5.26661 * 8 6 3 35 35 H 1.08003 * 119.98152 * 359.97359 * 10 9 8 36 36 H 1.08008 * 119.94023 * 179.97438 * 11 10 9 37 37 H 1.08003 * 119.96180 * 180.32144 * 12 11 10 38 38 H 1.09009 * 109.46582 * 300.00464 * 15 14 13 39 39 H 1.09001 * 109.46904 * 59.99792 * 15 14 13 40 40 H 1.09008 * 109.46854 * 299.99788 * 16 15 14 41 41 H 1.09002 * 109.47337 * 59.99552 * 16 15 14 42 42 H 0.97005 * 119.99746 * 180.02562 * 20 19 17 43 43 H 1.07993 * 120.06162 * 180.25647 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3072 6 6 3.5420 1.4443 -0.1239 7 8 4.1452 0.3951 -0.2037 8 7 4.2149 2.6118 -0.1458 9 6 5.5958 2.6192 -0.3712 10 6 6.3955 3.5757 0.2417 11 6 7.7586 3.5827 0.0196 12 6 8.3316 2.6349 -0.8072 13 6 7.5371 1.6806 -1.4266 14 8 8.1011 0.7529 -2.2440 15 6 9.5168 0.8228 -2.4252 16 6 9.9656 -0.2929 -3.3710 17 6 11.4586 -0.2188 -3.5625 18 1 12.0302 0.5472 -3.0596 19 6 12.0949 -1.1296 -4.3790 20 7 13.3977 -1.0646 -4.5465 21 14 11.1064 -2.4549 -5.2482 22 1 10.6620 -1.9524 -6.5731 23 1 11.9522 -3.6612 -5.4347 24 1 9.9189 -2.8050 -4.4279 25 6 6.1685 1.6706 -1.2065 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.5490 2.1253 1.3969 32 1 2.0699 1.5876 2.1491 33 1 1.9990 3.1542 1.3074 34 1 3.7419 3.4470 -0.0054 35 1 5.9510 4.3144 0.8923 36 1 8.3787 4.3274 0.4967 37 1 9.3985 2.6396 -0.9749 38 1 9.7810 1.7899 -2.8533 39 1 10.0127 0.7044 -1.4617 40 1 9.7013 -1.2601 -2.9431 41 1 9.4697 -0.1741 -4.3343 42 1 13.8453 -1.7052 -5.1212 43 1 5.5491 0.9262 -1.6844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055569871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:04 Heat of formation + Delta-G solvation = -69.131191 kcal Electronic energy + Delta-G solvation = -22383.320964 eV Core-core repulsion = 19007.167250 eV Total energy + Delta-G solvation = -3376.153714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84011 -39.44718 -37.40498 -35.75613 -34.66433 -33.30201 -31.11777 -30.60521 -29.59142 -28.84535 -25.78995 -25.19343 -23.43905 -22.25933 -21.57277 -20.40281 -19.93849 -18.46555 -17.39752 -16.75206 -16.17364 -15.86300 -15.65272 -15.41768 -15.33571 -14.87986 -14.38896 -14.07913 -13.90969 -13.57841 -13.19482 -13.06967 -12.82836 -12.58681 -12.53117 -12.12600 -11.99490 -11.85391 -11.77584 -11.54803 -11.21991 -11.04490 -10.91714 -10.84028 -10.36570 -10.15266 -9.96128 -9.84289 -9.76480 -9.32038 -8.60318 -8.28727 -7.86983 -6.11614 -4.12308 1.31801 1.59852 2.44205 2.78013 3.31001 3.38142 3.45033 3.76833 3.93414 4.26275 4.37410 4.41623 4.50282 4.87891 4.96321 4.97731 5.09522 5.12736 5.15704 5.22749 5.33507 5.37723 5.42539 5.46131 5.55059 5.64495 5.72722 5.84240 5.88415 5.94807 5.95471 6.01307 6.25329 6.32578 6.43858 6.51456 6.66088 6.90580 7.13125 7.19301 7.26393 7.64666 7.92500 7.94861 8.40737 8.89011 9.48943 11.00859 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.002997 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.475922 B = 9340.015779 C =10643.730128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.109 4.109 4 H 0.101 0.899 5 C -0.147 4.147 6 C 0.511 3.489 7 O -0.509 6.509 8 N -0.673 5.673 9 C 0.177 3.823 10 C -0.196 4.196 11 C -0.060 4.060 12 C -0.225 4.225 13 C 0.163 3.837 14 O -0.317 6.317 15 C 0.072 3.928 16 C -0.010 4.010 17 C -0.526 4.526 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.262 1.262 25 C -0.164 4.164 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.409 0.591 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.023 0.977 42 H 0.266 0.734 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.731 10.709 11.811 30.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.130 4.130 4 H 0.119 0.881 5 C -0.205 4.205 6 C 0.299 3.701 7 O -0.382 6.382 8 N -0.319 5.319 9 C 0.084 3.916 10 C -0.216 4.216 11 C -0.079 4.079 12 C -0.244 4.244 13 C 0.116 3.884 14 O -0.229 6.229 15 C -0.002 4.002 16 C -0.047 4.047 17 C -0.564 4.564 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.707 3.293 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.185 4.185 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.245 0.755 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.279 9.657 11.536 29.417 hybrid contribution -0.301 -0.060 -0.367 0.478 sum -25.580 9.597 11.169 29.516 Atomic orbital electron populations 1.21840 0.95317 1.02088 1.01806 1.21376 0.95476 0.93865 1.03897 1.21382 0.90909 0.99955 1.00778 0.88140 1.21858 1.02643 1.00082 0.95899 1.20936 0.90249 0.83327 0.75617 1.90786 1.69839 1.31100 1.46467 1.43539 1.06588 1.09955 1.71775 1.17303 0.82584 0.96544 0.95202 1.20631 0.93816 1.02495 1.04665 1.20679 0.93912 0.97152 0.96169 1.21405 1.00877 0.98602 1.03522 1.18904 0.91955 0.88212 0.89362 1.86137 1.26119 1.49529 1.61164 1.23101 0.75153 1.01462 1.00460 1.19593 0.97178 0.93638 0.94299 1.20839 0.89581 1.16394 1.29557 0.90729 1.24928 0.94818 0.97328 0.95936 1.69894 1.08317 1.37001 1.38414 0.86761 0.80578 0.81509 0.80467 1.20062 1.21181 1.18690 1.20239 0.92947 1.02779 1.02510 0.92658 0.92316 0.92457 0.90832 0.91119 0.90883 0.91828 0.92210 0.75478 0.86090 0.85591 0.84892 0.92438 0.92409 0.95352 0.95830 0.92468 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.16 0.36 -0.51 16 2 C -0.11 -0.87 4.75 -26.73 -0.13 -1.00 16 3 C -0.11 -0.78 2.73 -91.77 -0.25 -1.03 16 4 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 5 C -0.15 -0.73 8.84 37.15 0.33 -0.40 16 6 C 0.51 5.74 6.89 -10.98 -0.08 5.67 16 7 O -0.51 -8.14 13.60 5.55 0.08 -8.07 16 8 N -0.67 -6.68 5.27 -9.88 -0.05 -6.74 16 9 C 0.18 2.37 6.28 -83.72 -0.53 1.85 16 10 C -0.20 -2.29 9.96 -39.37 -0.39 -2.68 16 11 C -0.06 -0.77 10.03 -39.64 -0.40 -1.16 16 12 C -0.22 -3.53 9.04 -39.40 -0.36 -3.88 16 13 C 0.16 2.96 6.68 -39.24 -0.26 2.70 16 14 O -0.32 -6.63 10.13 -19.40 -0.20 -6.82 16 15 C 0.07 1.54 4.68 37.15 0.17 1.72 16 16 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 16 17 C -0.53 -15.06 9.66 -34.44 -0.33 -15.39 16 18 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 21 Si 0.88 22.02 27.47 -169.99 -4.67 17.36 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 25 C -0.16 -2.76 8.59 -39.25 -0.34 -3.09 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 29 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.27 6.57 -51.93 -0.34 -0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.21 7.46 -51.93 -0.39 -0.18 16 34 H 0.41 2.45 8.09 -40.82 -0.33 2.12 16 35 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 37 H 0.13 2.04 6.29 -52.48 -0.33 1.71 16 38 H 0.06 1.16 7.67 -51.92 -0.40 0.77 16 39 H 0.06 1.19 7.65 -51.93 -0.40 0.79 16 40 H 0.03 0.72 7.20 -51.92 -0.37 0.35 16 41 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.14 2.51 6.41 -52.49 -0.34 2.17 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -33.96 351.43 -7.78 -41.73 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.59 Total: -0.38 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.42 Total: -15.57 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.72 Total: -33.54 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.12 Total: -14.89 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.96 -7.78 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055569871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.397 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds