Wall clock time and date at job start Tue Mar 31 2020 07:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46977 * 2 1 4 4 H 1.09006 * 109.47036 * 304.99551 * 3 2 1 5 5 C 1.52992 * 109.47514 * 64.99812 * 3 2 1 6 6 C 1.50706 * 109.46848 * 185.00065 * 3 2 1 7 7 O 1.21286 * 120.00189 * 359.97438 * 6 3 2 8 8 N 1.34773 * 119.99707 * 179.97438 * 6 3 2 9 9 C 1.39921 * 119.99939 * 185.26895 * 8 6 3 10 10 C 1.38929 * 120.04357 * 213.33934 * 9 8 6 11 11 C 1.38114 * 120.04228 * 179.97438 * 10 9 8 12 12 C 1.38213 * 120.12515 * 359.67937 * 11 10 9 13 13 C 1.38767 * 120.08451 * 0.59615 * 12 11 10 14 14 O 1.35893 * 120.02305 * 179.70329 * 13 12 11 15 15 C 1.42901 * 117.00205 * 359.72538 * 14 13 12 16 16 C 1.52994 * 109.47193 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47143 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99804 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00142 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99920 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99894 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47631 * 89.99381 * 21 19 17 23 23 H 1.48498 * 109.47013 * 209.99647 * 21 19 17 24 24 H 1.48507 * 109.47095 * 329.99380 * 21 19 17 25 25 C 1.38628 * 119.95529 * 359.42663 * 13 12 11 26 26 H 1.08993 * 109.46709 * 60.00166 * 1 2 3 27 27 H 1.08999 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47022 * 300.00203 * 1 2 3 29 29 H 1.09000 * 109.47022 * 239.99797 * 2 1 3 30 30 H 1.09000 * 109.46906 * 119.99464 * 2 1 3 31 31 H 1.08998 * 109.47489 * 300.00103 * 5 3 2 32 32 H 1.09006 * 109.47181 * 59.99828 * 5 3 2 33 33 H 1.09004 * 109.47546 * 179.97438 * 5 3 2 34 34 H 0.97006 * 120.00285 * 5.26661 * 8 6 3 35 35 H 1.08003 * 119.98152 * 359.97359 * 10 9 8 36 36 H 1.08008 * 119.94023 * 179.97438 * 11 10 9 37 37 H 1.08003 * 119.96180 * 180.32144 * 12 11 10 38 38 H 1.09009 * 109.46582 * 300.00464 * 15 14 13 39 39 H 1.09001 * 109.46904 * 59.99792 * 15 14 13 40 40 H 1.09008 * 109.46854 * 299.99788 * 16 15 14 41 41 H 1.09002 * 109.47337 * 59.99552 * 16 15 14 42 42 H 0.97005 * 119.99746 * 180.02562 * 20 19 17 43 43 H 1.07993 * 120.06162 * 180.25647 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3072 6 6 3.5420 1.4443 -0.1239 7 8 4.1452 0.3951 -0.2037 8 7 4.2149 2.6118 -0.1458 9 6 5.5958 2.6192 -0.3712 10 6 6.3955 3.5757 0.2417 11 6 7.7586 3.5827 0.0196 12 6 8.3316 2.6349 -0.8072 13 6 7.5371 1.6806 -1.4266 14 8 8.1011 0.7529 -2.2440 15 6 9.5168 0.8228 -2.4252 16 6 9.9656 -0.2929 -3.3710 17 6 11.4586 -0.2188 -3.5625 18 1 12.0302 0.5472 -3.0596 19 6 12.0949 -1.1296 -4.3790 20 7 13.3977 -1.0646 -4.5465 21 14 11.1064 -2.4549 -5.2482 22 1 10.6620 -1.9524 -6.5731 23 1 11.9522 -3.6612 -5.4347 24 1 9.9189 -2.8050 -4.4279 25 6 6.1685 1.6706 -1.2065 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.5490 2.1253 1.3969 32 1 2.0699 1.5876 2.1491 33 1 1.9990 3.1542 1.3074 34 1 3.7419 3.4470 -0.0054 35 1 5.9510 4.3144 0.8923 36 1 8.3787 4.3274 0.4967 37 1 9.3985 2.6396 -0.9749 38 1 9.7810 1.7899 -2.8533 39 1 10.0127 0.7044 -1.4617 40 1 9.7013 -1.2601 -2.9431 41 1 9.4697 -0.1741 -4.3343 42 1 13.8453 -1.7052 -5.1212 43 1 5.5491 0.9262 -1.6844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055569871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:04 Heat of formation + Delta-G solvation = -91.040291 kcal Electronic energy + Delta-G solvation = -22384.271013 eV Core-core repulsion = 19007.167250 eV Total energy + Delta-G solvation = -3377.103764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82914 -40.69828 -38.62803 -36.44901 -35.78647 -35.33306 -32.96303 -31.48824 -30.81722 -29.75182 -27.15063 -26.28999 -24.48066 -23.44863 -22.91405 -21.79588 -20.79297 -19.78815 -18.83693 -18.18769 -17.25760 -17.05658 -16.89868 -16.76480 -16.46955 -16.20781 -15.61058 -15.30502 -14.81120 -14.57882 -14.48165 -14.45545 -14.32599 -13.63946 -13.45488 -13.33217 -12.99479 -12.76593 -12.69587 -12.58299 -12.53511 -12.38382 -12.12135 -11.88277 -11.75915 -11.69216 -11.61328 -11.48327 -11.24810 -10.84354 -10.78728 -9.45144 -9.04506 -8.37834 -6.44201 0.20486 0.45325 1.32518 1.34370 1.47444 1.54516 1.90199 2.30370 2.36971 2.80100 2.96863 3.57477 3.81442 3.87711 3.95733 4.13602 4.15966 4.18775 4.22720 4.35227 4.38895 4.50709 4.55531 4.58229 4.61934 4.72723 4.74332 4.96523 5.01252 5.06777 5.12073 5.20748 5.23669 5.25170 5.29199 5.36870 5.37480 5.45305 5.49314 5.51466 5.88684 6.13414 6.38820 6.48809 6.60719 7.10951 7.20927 8.77725 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.002997 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.475922 B = 9340.015779 C =10643.730128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.099 4.099 4 H 0.127 0.873 5 C -0.144 4.144 6 C 0.506 3.494 7 O -0.565 6.565 8 N -0.657 5.657 9 C 0.178 3.822 10 C -0.175 4.175 11 C -0.054 4.054 12 C -0.237 4.237 13 C 0.125 3.875 14 O -0.341 6.341 15 C 0.087 3.913 16 C -0.007 4.007 17 C -0.535 4.535 18 H 0.046 0.954 19 C 0.016 3.984 20 N -0.939 5.939 21 Si 0.946 3.054 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.257 1.257 25 C -0.185 4.185 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.432 0.568 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.129 0.871 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.025 0.975 42 H 0.271 0.729 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.631 12.908 13.096 34.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.120 4.120 4 H 0.144 0.856 5 C -0.201 4.201 6 C 0.296 3.704 7 O -0.442 6.442 8 N -0.304 5.304 9 C 0.083 3.917 10 C -0.195 4.195 11 C -0.072 4.072 12 C -0.256 4.256 13 C 0.079 3.921 14 O -0.255 6.255 15 C 0.013 3.987 16 C -0.045 4.045 17 C -0.573 4.573 18 H 0.064 0.936 19 C -0.182 4.182 20 N -0.579 5.579 21 Si 0.769 3.231 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.181 1.181 25 C -0.206 4.206 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.272 0.728 35 H 0.186 0.814 36 H 0.181 0.819 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -28.222 11.913 12.839 33.215 hybrid contribution 0.554 -0.629 -0.657 1.065 sum -27.668 11.284 12.182 32.269 Atomic orbital electron populations 1.21804 0.93068 1.02410 1.03126 1.21368 0.97345 0.94367 1.01789 1.21439 0.87516 0.99808 1.03274 0.85570 1.21889 1.03941 1.00692 0.93604 1.21808 0.91937 0.82672 0.74030 1.90775 1.71230 1.33210 1.48955 1.43472 1.05328 1.10863 1.70735 1.17470 0.84358 0.95758 0.94107 1.21131 0.93222 1.01849 1.03260 1.21139 0.94907 0.96497 0.94652 1.21525 1.00631 0.99097 1.04365 1.19193 0.92759 0.89251 0.90888 1.86039 1.25197 1.51414 1.62879 1.22707 0.76154 1.00242 0.99629 1.19457 0.94939 0.94794 0.95299 1.21077 0.91383 1.15683 1.29186 0.93613 1.25825 0.95851 0.99783 0.96765 1.70011 1.10032 1.38335 1.39519 0.85719 0.79159 0.78641 0.79562 1.18779 1.20158 1.18104 1.20226 0.92384 1.03823 1.04214 0.91601 0.92635 0.90738 0.93515 0.92872 0.88865 0.93140 0.89990 0.72752 0.81398 0.81878 0.85283 0.91838 0.92321 0.95911 0.95646 0.92013 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.67 71.98 0.70 -0.71 16 2 C -0.11 -1.75 4.75 30.60 0.15 -1.60 16 3 C -0.10 -1.22 2.73 -11.54 -0.03 -1.25 16 4 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 5 C -0.14 -0.93 8.84 71.98 0.64 -0.29 16 6 C 0.51 10.99 6.89 87.66 0.60 11.59 16 7 O -0.56 -18.91 13.60 -3.05 -0.04 -18.95 16 8 N -0.66 -11.48 5.27 -303.55 -1.60 -13.08 16 9 C 0.18 4.45 6.28 38.14 0.24 4.69 16 10 C -0.17 -3.39 9.96 22.41 0.22 -3.17 16 11 C -0.05 -1.19 10.03 22.23 0.22 -0.97 16 12 C -0.24 -7.33 9.04 22.39 0.20 -7.13 16 13 C 0.13 4.68 6.68 22.49 0.15 4.83 16 14 O -0.34 -14.96 10.13 -92.35 -0.94 -15.89 16 15 C 0.09 3.86 4.68 71.98 0.34 4.19 16 16 C -0.01 -0.38 4.41 29.85 0.13 -0.25 16 17 C -0.54 -31.61 9.66 25.60 0.25 -31.36 16 18 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 19 C 0.02 0.97 5.47 84.66 0.46 1.43 16 20 N -0.94 -58.90 13.96 21.45 0.30 -58.60 16 21 Si 0.95 45.83 27.47 68.60 1.88 47.72 16 22 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.26 -12.13 6.54 99.48 0.65 -11.48 16 25 C -0.19 -6.41 8.59 22.49 0.19 -6.22 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.47 6.57 -2.39 -0.02 0.45 16 29 H 0.05 0.97 7.96 -2.39 -0.02 0.95 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.28 6.57 -2.39 -0.02 0.27 16 32 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.08 0.19 7.46 -2.39 -0.02 0.17 16 34 H 0.43 3.37 8.09 -92.70 -0.75 2.62 16 35 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 37 H 0.13 4.00 6.29 -2.91 -0.02 3.98 16 38 H 0.06 2.67 7.67 -2.38 -0.02 2.65 16 39 H 0.06 2.52 7.65 -2.39 -0.02 2.51 16 40 H 0.02 1.17 7.20 -2.38 -0.02 1.16 16 41 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 42 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 43 H 0.11 4.41 6.41 -2.91 -0.02 4.39 16 Total: -1.00 -78.64 351.43 4.27 -74.37 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.20 Total: 10.66 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 4.46 Total: -26.23 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -1.30 Total: -71.68 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.98 Total: -34.84 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.88 Total: 47.72 kcal Total: -78.64 4.27 -74.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055569871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.667 kcal (2) G-P(sol) polarization free energy of solvation -78.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds