Wall clock time and date at job start Tue Mar 31 2020 07:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47088 * 2 1 4 4 C 1.53004 * 109.47088 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46736 * 180.02562 * 4 3 2 6 6 C 1.42909 * 113.99681 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46711 * 329.99963 * 6 5 4 8 8 C 1.53002 * 109.46855 * 89.99845 * 6 5 4 9 9 C 1.50692 * 109.47208 * 209.99947 * 6 5 4 10 10 O 1.21287 * 120.00156 * 355.00218 * 9 6 5 11 11 N 1.34774 * 119.99939 * 174.72385 * 9 6 5 12 12 C 1.39239 * 119.99879 * 174.97237 * 11 9 6 13 13 C 1.39485 * 119.83448 * 325.34108 * 12 11 9 14 14 C 1.36375 * 120.16802 * 179.72236 * 13 12 11 15 15 C 1.40866 * 119.82859 * 0.56943 * 14 13 12 16 16 C 1.41149 * 120.16501 * 179.68092 * 15 14 13 17 17 H 1.08010 * 120.00152 * 205.35963 * 16 15 14 18 18 C 1.39902 * 120.00009 * 25.35506 * 16 15 14 19 19 N 1.30867 * 120.00157 * 16.83144 * 18 16 15 20 20 Si 1.86807 * 119.99978 * 196.83346 * 18 16 15 21 21 H 1.48498 * 109.47275 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46988 * 120.00183 * 20 18 16 23 23 H 1.48500 * 109.46933 * 239.99876 * 20 18 16 24 24 C 1.40869 * 119.67416 * 359.70445 * 15 14 13 25 25 C 1.36377 * 119.82688 * 0.02562 * 24 15 14 26 26 H 1.09009 * 109.46910 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47311 * 299.99604 * 1 2 3 28 28 H 1.09002 * 109.47248 * 60.00312 * 1 2 3 29 29 H 1.09000 * 109.47065 * 239.99985 * 2 1 3 30 30 H 1.09004 * 109.47053 * 120.00191 * 2 1 3 31 31 H 1.09000 * 109.47179 * 60.00055 * 3 2 1 32 32 H 1.09004 * 109.47330 * 300.00021 * 3 2 1 33 33 H 1.09000 * 109.47065 * 59.99985 * 4 3 2 34 34 H 1.08997 * 109.46808 * 299.99562 * 4 3 2 35 35 H 1.08998 * 109.46663 * 60.00260 * 8 6 5 36 36 H 1.09004 * 109.46928 * 179.97438 * 8 6 5 37 37 H 1.08999 * 109.47031 * 300.00100 * 8 6 5 38 38 H 0.96994 * 120.00454 * 354.96954 * 11 9 6 39 39 H 1.07997 * 119.91451 * 359.97438 * 13 12 11 40 40 H 1.08000 * 120.08275 * 180.25672 * 14 13 12 41 41 H 0.97003 * 120.00551 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.09231 * 179.97438 * 24 15 14 43 43 H 1.07995 * 119.91542 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.4709 2.9026 0.0025 7 1 5.9029 2.0440 0.5165 8 6 5.9805 2.9431 -1.4396 9 6 5.8739 4.1687 0.7133 10 8 5.0251 4.9471 1.0938 11 7 7.1773 4.4335 0.9314 12 6 7.5561 5.6498 1.4934 13 6 6.8390 6.8073 1.1908 14 6 7.2006 8.0012 1.7418 15 6 8.3087 8.0656 2.6092 16 6 8.6932 9.2988 3.1782 17 1 9.7163 9.4553 3.4873 18 6 7.7493 10.3183 3.3419 19 7 6.4714 10.0422 3.2853 20 14 8.3131 12.0740 3.6411 21 1 9.7972 12.1206 3.6613 22 1 7.8046 12.9491 2.5544 23 1 7.7856 12.5477 4.9459 24 6 9.0314 6.8933 2.9056 25 6 8.6545 5.7057 2.3513 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 5.5484 3.8017 -1.9536 36 1 7.0671 3.0296 -1.4387 37 1 5.6890 2.0272 -1.9538 38 1 7.8515 3.7768 0.6969 39 1 5.9929 6.7572 0.5215 40 1 6.6419 8.8959 1.5098 41 1 5.8168 10.7491 3.3984 42 1 9.8823 6.9350 3.5695 43 1 9.2073 4.8060 2.5778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065537632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:08 Heat of formation + Delta-G solvation = -80.110854 kcal Electronic energy + Delta-G solvation = -22411.420263 eV Core-core repulsion = 19034.790435 eV Total energy + Delta-G solvation = -3376.629828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.86546 -38.17919 -36.99616 -35.19039 -34.41079 -33.04140 -31.54223 -29.48798 -29.14185 -28.73750 -25.41745 -24.14900 -23.17382 -21.49427 -21.33216 -20.87184 -19.38714 -17.38588 -17.21233 -16.93701 -16.25696 -15.70279 -15.33485 -14.98696 -14.55735 -14.26804 -13.91767 -13.72576 -13.33998 -13.21886 -12.77562 -12.62782 -12.41064 -12.37773 -12.07718 -11.88383 -11.79973 -11.50421 -11.40909 -11.31809 -11.12521 -11.01997 -10.90735 -10.85618 -10.50481 -9.92032 -9.88058 -9.72972 -9.37998 -9.00858 -8.64261 -7.50924 -6.98996 -6.71240 -4.27501 2.58001 3.00102 3.09133 3.11851 3.14753 3.14995 3.40523 3.95121 4.04451 4.65549 4.66874 4.72445 4.83224 4.84983 4.96907 5.05822 5.11093 5.18561 5.36764 5.44763 5.54591 5.57734 5.62156 5.66441 5.72729 5.86975 5.99205 6.03508 6.09000 6.15875 6.39695 6.81185 6.96226 7.06139 7.08715 7.20141 7.30669 7.61304 7.70792 7.98715 8.07203 8.23075 8.33549 8.64697 8.81243 8.90413 9.02812 10.21569 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026586 B = 0.002763 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.923008 B =10133.278014 C =10813.811293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.059 3.941 5 O -0.356 6.356 6 C 0.074 3.926 7 H 0.080 0.920 8 C -0.169 4.169 9 C 0.496 3.504 10 O -0.506 6.506 11 N -0.650 5.650 12 C -0.005 4.005 13 C -0.085 4.085 14 C -0.155 4.155 15 C 0.105 3.895 16 C -0.459 4.459 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.788 5.788 20 Si 0.908 3.092 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.275 1.275 24 C -0.215 4.215 25 C -0.104 4.104 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.393 0.607 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.281 0.719 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 -16.689 -7.769 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.018 4.018 5 O -0.274 6.274 6 C 0.012 3.988 7 H 0.098 0.902 8 C -0.226 4.226 9 C 0.281 3.719 10 O -0.380 6.380 11 N -0.296 5.296 12 C -0.097 4.097 13 C -0.105 4.105 14 C -0.174 4.174 15 C 0.103 3.897 16 C -0.488 4.488 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.413 5.413 20 Si 0.733 3.267 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.200 1.200 24 C -0.235 4.235 25 C -0.124 4.124 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.226 0.774 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.044 -15.859 -7.482 18.247 hybrid contribution 0.658 0.151 0.121 0.686 sum -4.386 -15.708 -7.361 17.893 Atomic orbital electron populations 1.21756 0.95417 1.01591 1.02181 1.21440 0.96278 0.96088 1.02060 1.21545 0.93328 0.97082 1.03801 1.22620 0.95412 0.83862 0.99868 1.88068 1.18625 1.25755 1.94910 1.21874 0.83431 0.96931 0.96563 0.90177 1.22218 1.01741 1.03403 0.95270 1.20278 0.83082 0.87731 0.80779 1.90747 1.49849 1.48492 1.48878 1.42895 1.06416 1.18053 1.62191 1.17139 1.02195 0.84052 1.06268 1.20414 0.98432 0.91722 0.99951 1.20989 1.00534 0.96543 0.99379 1.17675 0.90720 0.92101 0.89237 1.19572 0.96691 0.96870 1.35672 0.90339 1.25950 0.94404 1.01246 0.92907 1.69865 1.01608 1.34792 1.35044 0.86265 0.80233 0.81676 0.78559 1.18413 1.19701 1.20012 1.20547 1.04567 0.92343 1.06080 1.20041 0.97583 0.97144 0.97661 0.92706 0.92496 0.92586 0.91954 0.91872 0.90810 0.91009 0.93413 0.93380 0.91015 0.90899 0.91627 0.77394 0.88194 0.86191 0.90806 0.88620 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -1.19 5.58 -26.73 -0.15 -1.34 16 4 C 0.06 0.63 5.75 37.16 0.21 0.85 16 5 O -0.36 -5.39 9.53 -55.09 -0.52 -5.91 16 6 C 0.07 1.00 3.13 -27.89 -0.09 0.91 16 7 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 8 C -0.17 -1.82 9.48 37.16 0.35 -1.46 16 9 C 0.50 9.32 6.89 -10.99 -0.08 9.24 16 10 O -0.51 -12.25 14.25 -14.31 -0.20 -12.46 16 11 N -0.65 -11.64 5.27 -9.74 -0.05 -11.69 16 12 C 0.00 -0.10 6.26 -83.57 -0.52 -0.63 16 13 C -0.09 -2.17 8.57 -39.79 -0.34 -2.52 16 14 C -0.15 -4.22 8.63 -39.26 -0.34 -4.56 16 15 C 0.11 2.86 5.57 -106.80 -0.59 2.26 16 16 C -0.46 -12.28 9.04 -37.85 -0.34 -12.62 16 17 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 18 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 19 N -0.79 -21.13 10.94 55.55 0.61 -20.52 16 20 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C -0.22 -5.27 9.74 -39.26 -0.38 -5.65 16 25 C -0.10 -2.31 9.90 -39.79 -0.39 -2.70 16 26 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.42 7.87 -51.93 -0.41 0.01 16 34 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 37 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 38 H 0.39 5.28 8.79 -40.82 -0.36 4.92 16 39 H 0.10 2.58 6.49 -52.49 -0.34 2.24 16 40 H 0.12 3.39 6.18 -52.49 -0.32 3.07 16 41 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 42 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 43 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -32.34 359.10 -9.20 -41.54 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.86 Total: 7.95 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.54 Total: -18.19 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.56 Total: -32.21 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.73 Total: -18.37 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.34 -9.20 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065537632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.570 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds