Wall clock time and date at job start Tue Mar 31 2020 07:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47088 * 2 1 4 4 C 1.53004 * 109.47088 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46736 * 180.02562 * 4 3 2 6 6 C 1.42909 * 113.99681 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46711 * 329.99963 * 6 5 4 8 8 C 1.53002 * 109.46855 * 89.99845 * 6 5 4 9 9 C 1.50692 * 109.47208 * 209.99947 * 6 5 4 10 10 O 1.21287 * 120.00156 * 355.00218 * 9 6 5 11 11 N 1.34774 * 119.99939 * 174.72385 * 9 6 5 12 12 C 1.39239 * 119.99879 * 174.97237 * 11 9 6 13 13 C 1.39485 * 119.83448 * 325.34108 * 12 11 9 14 14 C 1.36375 * 120.16802 * 179.72236 * 13 12 11 15 15 C 1.40866 * 119.82859 * 0.56943 * 14 13 12 16 16 C 1.41149 * 120.16501 * 179.68092 * 15 14 13 17 17 H 1.08010 * 120.00152 * 205.35963 * 16 15 14 18 18 C 1.39902 * 120.00009 * 25.35506 * 16 15 14 19 19 N 1.30867 * 120.00157 * 16.83144 * 18 16 15 20 20 Si 1.86807 * 119.99978 * 196.83346 * 18 16 15 21 21 H 1.48498 * 109.47275 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46988 * 120.00183 * 20 18 16 23 23 H 1.48500 * 109.46933 * 239.99876 * 20 18 16 24 24 C 1.40869 * 119.67416 * 359.70445 * 15 14 13 25 25 C 1.36377 * 119.82688 * 0.02562 * 24 15 14 26 26 H 1.09009 * 109.46910 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47311 * 299.99604 * 1 2 3 28 28 H 1.09002 * 109.47248 * 60.00312 * 1 2 3 29 29 H 1.09000 * 109.47065 * 239.99985 * 2 1 3 30 30 H 1.09004 * 109.47053 * 120.00191 * 2 1 3 31 31 H 1.09000 * 109.47179 * 60.00055 * 3 2 1 32 32 H 1.09004 * 109.47330 * 300.00021 * 3 2 1 33 33 H 1.09000 * 109.47065 * 59.99985 * 4 3 2 34 34 H 1.08997 * 109.46808 * 299.99562 * 4 3 2 35 35 H 1.08998 * 109.46663 * 60.00260 * 8 6 5 36 36 H 1.09004 * 109.46928 * 179.97438 * 8 6 5 37 37 H 1.08999 * 109.47031 * 300.00100 * 8 6 5 38 38 H 0.96994 * 120.00454 * 354.96954 * 11 9 6 39 39 H 1.07997 * 119.91451 * 359.97438 * 13 12 11 40 40 H 1.08000 * 120.08275 * 180.25672 * 14 13 12 41 41 H 0.97003 * 120.00551 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.09231 * 179.97438 * 24 15 14 43 43 H 1.07995 * 119.91542 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.4709 2.9026 0.0025 7 1 5.9029 2.0440 0.5165 8 6 5.9805 2.9431 -1.4396 9 6 5.8739 4.1687 0.7133 10 8 5.0251 4.9471 1.0938 11 7 7.1773 4.4335 0.9314 12 6 7.5561 5.6498 1.4934 13 6 6.8390 6.8073 1.1908 14 6 7.2006 8.0012 1.7418 15 6 8.3087 8.0656 2.6092 16 6 8.6932 9.2988 3.1782 17 1 9.7163 9.4553 3.4873 18 6 7.7493 10.3183 3.3419 19 7 6.4714 10.0422 3.2853 20 14 8.3131 12.0740 3.6411 21 1 9.7972 12.1206 3.6613 22 1 7.8046 12.9491 2.5544 23 1 7.7856 12.5477 4.9459 24 6 9.0314 6.8933 2.9056 25 6 8.6545 5.7057 2.3513 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 5.5484 3.8017 -1.9536 36 1 7.0671 3.0296 -1.4387 37 1 5.6890 2.0272 -1.9538 38 1 7.8515 3.7768 0.6969 39 1 5.9929 6.7572 0.5215 40 1 6.6419 8.8959 1.5098 41 1 5.8168 10.7491 3.3984 42 1 9.8823 6.9350 3.5695 43 1 9.2073 4.8060 2.5778 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065537632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:07 Heat of formation + Delta-G solvation = -99.219649 kcal Electronic energy + Delta-G solvation = -22412.248882 eV Core-core repulsion = 19034.790435 eV Total energy + Delta-G solvation = -3377.458447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36925 -39.54271 -38.58340 -36.22246 -35.92417 -34.81564 -32.65419 -31.43238 -30.68983 -29.74935 -27.10083 -25.35357 -24.11411 -23.26751 -22.66373 -22.04998 -20.96434 -19.27490 -18.74597 -18.13289 -17.32818 -17.13308 -16.84440 -16.33513 -15.77565 -15.69694 -15.39279 -14.84384 -14.71436 -14.40084 -14.21635 -13.95169 -13.84807 -13.64830 -13.37776 -13.23835 -13.14742 -12.82569 -12.70057 -12.68644 -12.33592 -12.27340 -11.96138 -11.82472 -11.75972 -11.63485 -11.54050 -11.23465 -10.92435 -10.60543 -10.34498 -9.47223 -8.88826 -8.61888 -6.28230 0.78174 1.12600 1.37325 1.41816 1.54330 1.77425 1.96220 2.20468 2.74507 2.93959 3.68936 3.73095 3.90093 3.96257 4.03746 4.14780 4.21319 4.41482 4.42893 4.43341 4.43769 4.66252 4.70733 4.78579 4.90454 4.95091 4.95516 5.03516 5.08973 5.16851 5.19212 5.23424 5.28922 5.34537 5.41826 5.44113 5.66284 5.83847 6.06472 6.08990 6.17532 6.33297 6.66758 6.73727 6.91502 6.99776 7.40938 8.33251 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026586 B = 0.002763 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.923008 B =10133.278014 C =10813.811293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.121 4.121 4 C 0.054 3.946 5 O -0.395 6.395 6 C 0.082 3.918 7 H 0.122 0.878 8 C -0.163 4.163 9 C 0.490 3.510 10 O -0.570 6.570 11 N -0.637 5.637 12 C 0.008 3.992 13 C -0.101 4.101 14 C -0.181 4.181 15 C 0.072 3.928 16 C -0.492 4.492 17 H 0.084 0.916 18 C 0.027 3.973 19 N -0.831 5.831 20 Si 0.987 3.013 21 H -0.251 1.251 22 H -0.267 1.267 23 H -0.267 1.267 24 C -0.222 4.222 25 C -0.097 4.097 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.420 0.580 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.286 0.714 42 H 0.113 0.887 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 -19.415 -8.248 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.159 4.159 4 C -0.022 4.022 5 O -0.314 6.314 6 C 0.021 3.979 7 H 0.139 0.861 8 C -0.220 4.220 9 C 0.278 3.722 10 O -0.448 6.448 11 N -0.284 5.284 12 C -0.086 4.086 13 C -0.121 4.121 14 C -0.201 4.201 15 C 0.070 3.930 16 C -0.521 4.521 17 H 0.102 0.898 18 C -0.187 4.187 19 N -0.457 5.457 20 Si 0.807 3.193 21 H -0.174 1.174 22 H -0.192 1.192 23 H -0.192 1.192 24 C -0.242 4.242 25 C -0.117 4.117 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.258 0.742 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.411 -18.651 -7.985 20.573 hybrid contribution 0.101 0.817 0.226 0.854 sum -3.310 -17.834 -7.759 19.728 Atomic orbital electron populations 1.21781 0.95312 1.02329 1.01749 1.21412 0.96355 0.94344 1.03103 1.21575 0.93411 0.98551 1.02330 1.22871 0.95456 0.82178 1.01693 1.88040 1.19539 1.28643 1.95175 1.21939 0.83365 0.94748 0.97848 0.86102 1.22229 1.02775 1.03952 0.93077 1.21435 0.82362 0.88870 0.79511 1.90729 1.51595 1.51086 1.51402 1.42770 1.07313 1.16914 1.61379 1.17225 1.01226 0.84907 1.05213 1.20428 0.98673 0.92726 1.00272 1.20877 1.01599 0.96473 1.01160 1.18026 0.91390 0.93706 0.89900 1.19860 0.97273 0.97914 1.37082 0.89791 1.26911 0.94109 1.05654 0.92025 1.69955 1.02990 1.36413 1.36346 0.85091 0.80023 0.75551 0.78599 1.17440 1.19216 1.19187 1.20854 1.04686 0.92360 1.06269 1.20431 0.97070 0.98132 0.96055 0.91348 0.93319 0.92732 0.90403 0.91215 0.93052 0.91825 0.90609 0.92244 0.93473 0.88843 0.88472 0.74182 0.89676 0.88686 0.90319 0.86889 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.11 -1.49 5.93 30.59 0.18 -1.31 16 3 C -0.12 -2.30 5.58 30.59 0.17 -2.13 16 4 C 0.05 1.02 5.75 71.98 0.41 1.44 16 5 O -0.39 -11.49 9.53 -129.99 -1.24 -12.73 16 6 C 0.08 2.01 3.13 29.85 0.09 2.10 16 7 H 0.12 1.99 7.79 -2.39 -0.02 1.97 16 8 C -0.16 -2.97 9.48 71.98 0.68 -2.29 16 9 C 0.49 17.97 6.89 87.65 0.60 18.58 16 10 O -0.57 -28.49 14.25 15.94 0.23 -28.26 16 11 N -0.64 -21.42 5.27 -303.11 -1.60 -23.02 16 12 C 0.01 0.34 6.26 38.57 0.24 0.58 16 13 C -0.10 -5.36 8.57 22.14 0.19 -5.17 16 14 C -0.18 -10.44 8.63 22.48 0.19 -10.25 16 15 C 0.07 4.05 5.57 -21.28 -0.12 3.93 16 16 C -0.49 -27.14 9.04 23.39 0.21 -26.92 16 17 H 0.08 4.35 7.90 -2.91 -0.02 4.33 16 18 C 0.03 1.43 5.15 85.24 0.44 1.87 16 19 N -0.83 -46.78 10.94 21.82 0.24 -46.54 16 20 Si 0.99 39.57 29.59 68.60 2.03 41.60 16 21 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 24 C -0.22 -10.73 9.74 22.48 0.22 -10.51 16 25 C -0.10 -4.09 9.90 22.14 0.22 -3.87 16 26 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.02 7.87 -2.39 -0.02 1.00 16 34 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 37 H 0.10 1.20 7.87 -2.39 -0.02 1.19 16 38 H 0.42 9.56 8.79 -92.71 -0.82 8.74 16 39 H 0.09 4.69 6.49 -2.91 -0.02 4.67 16 40 H 0.10 5.82 6.18 -2.91 -0.02 5.81 16 41 H 0.29 14.64 8.30 -92.71 -0.77 13.88 16 42 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 43 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -76.26 359.10 4.29 -71.96 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.18 Total: 32.19 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 4.46 Total: -35.20 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -1.36 Total: -69.56 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.01 Total: -40.99 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -76.26 4.29 -71.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065537632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.256 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds