Wall clock time and date at job start Tue Mar 31 2020 07:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47524 * 2 1 4 4 C 1.53000 * 109.47345 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47285 * 180.02562 * 4 3 2 6 6 C 1.42897 * 113.99733 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47561 * 29.99905 * 6 5 4 8 8 C 1.53005 * 109.47010 * 269.99702 * 6 5 4 9 9 C 1.50705 * 109.46637 * 149.99956 * 6 5 4 10 10 O 1.21278 * 120.00322 * 5.00021 * 9 6 5 11 11 N 1.34781 * 119.99516 * 184.99803 * 9 6 5 12 12 C 1.39236 * 119.99432 * 175.71248 * 11 9 6 13 13 C 1.39482 * 119.82959 * 215.00293 * 12 11 9 14 14 C 1.36376 * 120.16762 * 179.75524 * 13 12 11 15 15 C 1.40871 * 119.82805 * 0.52624 * 14 13 12 16 16 C 1.41155 * 120.16393 * 179.71042 * 15 14 13 17 17 H 1.07995 * 120.00120 * 214.80141 * 16 15 14 18 18 C 1.39909 * 119.99686 * 34.81073 * 16 15 14 19 19 N 1.30866 * 120.00406 * 355.54176 * 18 16 15 20 20 Si 1.86799 * 119.99796 * 175.55115 * 18 16 15 21 21 H 1.48506 * 109.47336 * 59.99276 * 20 18 16 22 22 H 1.48500 * 109.47250 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46953 * 299.99500 * 20 18 16 24 24 C 1.40872 * 119.67374 * 359.73258 * 15 14 13 25 25 C 1.36372 * 119.82398 * 0.02562 * 24 15 14 26 26 H 1.09008 * 109.46685 * 300.00095 * 1 2 3 27 27 H 1.09000 * 109.47120 * 59.99574 * 1 2 3 28 28 H 1.08996 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46685 * 239.99905 * 2 1 3 30 30 H 1.09000 * 109.47120 * 120.00426 * 2 1 3 31 31 H 1.08999 * 109.47136 * 60.00053 * 3 2 1 32 32 H 1.09000 * 109.47270 * 300.00334 * 3 2 1 33 33 H 1.09000 * 109.46924 * 300.00196 * 4 3 2 34 34 H 1.08999 * 109.47245 * 59.99770 * 4 3 2 35 35 H 1.09000 * 109.46803 * 300.00111 * 8 6 5 36 36 H 1.08994 * 109.47009 * 60.00518 * 8 6 5 37 37 H 1.09001 * 109.46710 * 180.02562 * 8 6 5 38 38 H 0.96993 * 120.00257 * 355.70750 * 11 9 6 39 39 H 1.07996 * 119.91468 * 0.02984 * 13 12 11 40 40 H 1.08004 * 120.08608 * 180.25307 * 14 13 12 41 41 H 0.96998 * 120.00176 * 180.02562 * 19 18 16 42 42 H 1.07994 * 120.08656 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.91435 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0465 2.7897 0.0000 6 6 5.4710 2.9023 0.0000 7 1 5.9035 2.0441 -0.5142 8 6 5.9794 2.9420 1.4426 9 6 5.8747 4.1690 -0.7099 10 8 5.0263 4.9476 -1.0905 11 7 7.1786 4.4364 -0.9217 12 6 7.5483 5.5607 -1.6552 13 6 8.6698 5.5111 -2.4830 14 6 9.0353 6.6067 -3.2082 15 6 8.2833 7.7940 -3.1112 16 6 8.6588 8.9340 -3.8541 17 1 8.5177 9.9204 -3.4376 18 6 9.2135 8.7861 -5.1299 19 7 9.4652 7.5908 -5.5995 20 14 9.5953 10.2948 -6.1631 21 1 10.5715 11.1528 -5.4445 22 1 10.1728 9.8709 -7.4638 23 1 8.3453 11.0603 -6.4019 24 6 7.1550 7.8380 -2.2689 25 6 6.7991 6.7329 -1.5536 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 3.9337 0.9284 0.8891 34 1 3.9331 0.9287 -0.8908 35 1 5.5470 3.8004 1.9567 36 1 5.6875 2.0259 1.9560 37 1 7.0660 3.0284 1.4426 38 1 7.8593 3.8458 -0.5632 39 1 9.2477 4.6015 -2.5531 40 1 9.9016 6.5656 -3.8519 41 1 9.8501 7.4882 -6.4839 42 1 6.5740 8.7449 -2.1892 43 1 5.9346 6.7651 -0.9071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068500726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:10 Heat of formation + Delta-G solvation = -97.015376 kcal Electronic energy + Delta-G solvation = -22350.037066 eV Core-core repulsion = 18972.674203 eV Total energy + Delta-G solvation = -3377.362863 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.40420 -39.55420 -38.58960 -36.18774 -35.92359 -34.79899 -32.65009 -31.47239 -30.61256 -29.74645 -27.08893 -25.35684 -24.12541 -23.31260 -22.54925 -22.05438 -21.03629 -19.28022 -18.70913 -18.14893 -17.43053 -17.03940 -16.79085 -16.35488 -15.81030 -15.71827 -15.37186 -14.82412 -14.71045 -14.41268 -14.22326 -14.02489 -13.76496 -13.60489 -13.27501 -13.23785 -13.14447 -12.87421 -12.78321 -12.68202 -12.48112 -12.27568 -11.95985 -11.83859 -11.74236 -11.53790 -11.40387 -11.21921 -10.90790 -10.69269 -10.37425 -9.48189 -8.75123 -8.51295 -6.34108 0.77032 1.12007 1.39261 1.45373 1.51171 1.73027 1.95282 2.23958 2.78860 2.92564 3.63122 3.70479 3.89936 3.96562 4.03814 4.15066 4.21460 4.38701 4.41484 4.43660 4.50617 4.66781 4.70980 4.79290 4.90790 4.91962 4.95239 5.03915 5.11465 5.13337 5.19903 5.23883 5.32290 5.34807 5.41839 5.44377 5.68198 5.88425 5.99123 6.09794 6.19940 6.37941 6.66252 6.71076 6.95572 6.98516 7.36306 8.41400 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029503 B = 0.002623 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.827127 B =10671.385262 C =11059.416716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.120 4.120 4 C 0.054 3.946 5 O -0.393 6.393 6 C 0.081 3.919 7 H 0.118 0.882 8 C -0.164 4.164 9 C 0.493 3.507 10 O -0.566 6.566 11 N -0.638 5.638 12 C 0.020 3.980 13 C -0.116 4.116 14 C -0.159 4.159 15 C 0.067 3.933 16 C -0.498 4.498 17 H 0.072 0.928 18 C 0.027 3.973 19 N -0.840 5.840 20 Si 0.989 3.011 21 H -0.257 1.257 22 H -0.267 1.267 23 H -0.267 1.267 24 C -0.223 4.223 25 C -0.099 4.099 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.420 0.580 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.285 0.715 42 H 0.094 0.906 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 -17.079 10.952 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.158 4.158 4 C -0.022 4.022 5 O -0.312 6.312 6 C 0.020 3.980 7 H 0.135 0.865 8 C -0.221 4.221 9 C 0.281 3.719 10 O -0.444 6.444 11 N -0.285 5.285 12 C -0.073 4.073 13 C -0.136 4.136 14 C -0.179 4.179 15 C 0.065 3.935 16 C -0.529 4.529 17 H 0.090 0.910 18 C -0.185 4.185 19 N -0.468 5.468 20 Si 0.810 3.190 21 H -0.182 1.182 22 H -0.191 1.191 23 H -0.191 1.191 24 C -0.243 4.243 25 C -0.119 4.119 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.258 0.742 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.685 -16.545 10.496 20.702 hybrid contribution 0.368 0.590 -0.588 0.910 sum -6.317 -15.955 9.908 19.815 Atomic orbital electron populations 1.21777 0.95257 1.02310 1.01792 1.21417 0.96401 0.94442 1.03042 1.21566 0.93285 0.98491 1.02426 1.22866 0.95530 0.82209 1.01612 1.88024 1.19423 1.28562 1.95173 1.21946 0.83423 0.94633 0.97995 0.86487 1.22242 1.02770 1.04157 0.92943 1.21402 0.82232 0.88717 0.79534 1.90683 1.51621 1.50433 1.51674 1.42801 1.07269 1.25585 1.52841 1.17313 1.00588 0.87259 1.02188 1.20575 0.97539 0.98910 0.96551 1.21199 1.01490 0.93948 1.01253 1.18049 0.90050 0.94546 0.90867 1.19697 1.38015 0.94013 1.01132 0.90952 1.26748 0.92273 1.00417 0.99047 1.69807 1.33834 1.24792 1.18358 0.85148 0.79245 0.77478 0.77139 1.18161 1.19127 1.19131 1.20925 0.99415 0.98259 1.05655 1.20505 0.99099 0.92311 0.99975 0.92626 0.93302 0.91429 0.91369 0.90421 0.91621 0.92997 0.90613 0.92486 0.92999 0.88583 0.88855 0.74222 0.85284 0.86086 0.90403 0.88781 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.46 5.93 30.59 0.18 -1.28 16 3 C -0.12 -2.19 5.58 30.59 0.17 -2.02 16 4 C 0.05 0.99 5.75 71.98 0.41 1.41 16 5 O -0.39 -10.98 9.53 -129.99 -1.24 -12.21 16 6 C 0.08 1.92 3.13 29.85 0.09 2.01 16 7 H 0.12 1.97 7.79 -2.39 -0.02 1.95 16 8 C -0.16 -2.76 9.47 71.98 0.68 -2.08 16 9 C 0.49 17.41 7.01 87.66 0.61 18.03 16 10 O -0.57 -26.71 13.93 15.97 0.22 -26.48 16 11 N -0.64 -21.23 5.27 -303.10 -1.60 -22.83 16 12 C 0.02 0.88 6.31 38.57 0.24 1.13 16 13 C -0.12 -5.18 9.90 22.14 0.22 -4.96 16 14 C -0.16 -8.35 8.62 22.48 0.19 -8.16 16 15 C 0.07 3.79 5.55 -21.27 -0.12 3.67 16 16 C -0.50 -27.81 9.02 23.39 0.21 -27.60 16 17 H 0.07 3.91 7.85 -2.91 -0.02 3.88 16 18 C 0.03 1.41 5.42 85.24 0.46 1.87 16 19 N -0.84 -44.67 10.60 21.82 0.23 -44.44 16 20 Si 0.99 39.59 29.56 68.60 2.03 41.62 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 24 C -0.22 -12.00 9.74 22.48 0.22 -11.78 16 25 C -0.10 -4.97 8.61 22.13 0.19 -4.78 16 26 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 0.98 7.87 -2.39 -0.02 0.96 16 34 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.10 7.87 -2.39 -0.02 1.08 16 37 H 0.09 1.18 7.79 -2.39 -0.02 1.16 16 38 H 0.42 9.73 8.45 -92.71 -0.78 8.94 16 39 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 40 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 41 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 42 H 0.09 4.91 8.06 -2.91 -0.02 4.89 16 43 H 0.10 5.21 6.22 -2.91 -0.02 5.19 16 Total: -1.00 -72.65 357.77 4.35 -68.30 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.21 Total: 31.78 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 4.49 Total: -35.73 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -1.37 Total: -67.27 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.02 Total: -38.70 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -72.65 4.35 -68.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068500726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.714 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds