Wall clock time and date at job start Tue Mar 31 2020 07:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47145 * 2 1 4 4 H 1.08998 * 109.47847 * 304.97378 * 3 2 1 5 5 C 1.53093 * 109.48026 * 184.94204 * 3 2 1 6 6 C 1.53184 * 109.16058 * 182.40690 * 5 3 2 7 7 H 1.08999 * 109.61449 * 297.06880 * 6 5 3 8 8 N 1.46498 * 109.53978 * 176.84830 * 6 5 3 9 9 C 1.39786 * 119.99794 * 155.44601 * 8 6 5 10 10 C 1.38951 * 120.00275 * 179.97438 * 9 8 6 11 11 C 1.38012 * 119.98724 * 180.02562 * 10 9 8 12 12 C 1.38896 * 120.01019 * 359.97438 * 11 10 9 13 13 O 1.35793 * 119.99421 * 180.02562 * 12 11 10 14 14 C 1.34811 * 117.00336 * 5.54334 * 13 12 11 15 15 H 1.08003 * 119.99959 * 354.94452 * 14 13 12 16 16 C 1.38619 * 120.00614 * 174.94144 * 14 13 12 17 17 N 1.31588 * 119.99712 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00323 * 180.27618 * 16 14 13 19 19 H 1.48503 * 109.47124 * 179.72244 * 18 16 14 20 20 H 1.48497 * 109.46961 * 299.72206 * 18 16 14 21 21 H 1.48500 * 109.46801 * 59.72322 * 18 16 14 22 22 C 1.38896 * 120.01020 * 0.27976 * 12 11 10 23 23 C 1.38004 * 120.00681 * 359.48585 * 22 12 11 24 24 C 1.53182 * 109.03410 * 56.98058 * 6 5 3 25 25 C 1.53090 * 109.16484 * 303.01659 * 24 6 5 26 26 O 1.42902 * 109.41234 * 57.61021 * 25 24 6 27 27 H 1.08994 * 109.47344 * 300.00329 * 1 2 3 28 28 H 1.09005 * 109.46790 * 59.99867 * 1 2 3 29 29 H 1.09000 * 109.46776 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47568 * 240.00339 * 2 1 3 31 31 H 1.08999 * 109.47401 * 119.99820 * 2 1 3 32 32 H 1.08998 * 109.52060 * 62.50642 * 5 3 2 33 33 H 1.08993 * 109.52574 * 302.31154 * 5 3 2 34 34 H 0.97000 * 120.00200 * 335.44195 * 8 6 5 35 35 H 1.07994 * 120.00771 * 359.97438 * 10 9 8 36 36 H 1.08001 * 119.99514 * 180.02562 * 11 10 9 37 37 H 0.96998 * 119.99929 * 180.02562 * 17 16 14 38 38 H 1.08003 * 119.99819 * 179.74724 * 22 12 11 39 39 H 1.07999 * 120.00716 * 180.23057 * 23 22 12 40 40 H 1.09005 * 109.51953 * 62.92729 * 24 6 5 41 41 H 1.08998 * 109.51738 * 183.11047 * 24 6 5 42 42 H 1.08994 * 109.48161 * 177.59073 * 25 24 6 43 43 H 1.08995 * 109.48201 * 297.61821 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 -0.8420 5 6 3.5659 1.4446 -0.1243 6 6 4.0734 2.8886 -0.0631 7 1 3.6813 3.4505 -0.9108 8 7 5.5377 2.8955 -0.1057 9 6 6.2181 4.0249 -0.5701 10 6 7.6070 4.0318 -0.6101 11 6 8.2784 5.1472 -1.0682 12 6 7.5659 6.2625 -1.4897 13 8 8.2268 7.3596 -1.9408 14 6 9.5658 7.2606 -2.0624 15 1 10.0737 6.3677 -1.7290 16 6 10.2907 8.3047 -2.6154 17 7 9.6718 9.3924 -3.0221 18 14 12.1452 8.1643 -2.7909 19 1 12.6787 9.4029 -3.4126 20 1 12.7567 7.9803 -1.4503 21 1 12.4742 6.9982 -3.6495 22 6 6.1777 6.2578 -1.4448 23 6 5.5056 5.1409 -0.9914 24 6 3.5956 3.5311 1.2428 25 6 2.0686 3.4485 1.3143 26 8 1.6621 2.0817 1.2210 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8544 0.9971 -1.0755 33 1 3.9989 0.8712 0.6953 34 1 6.0352 2.1165 0.1884 35 1 8.1611 3.1648 -0.2820 36 1 9.3579 5.1525 -1.0997 37 1 10.1790 10.1229 -3.4094 38 1 5.6240 7.1266 -1.7688 39 1 4.4261 5.1359 -0.9601 40 1 4.0293 2.9998 2.0901 41 1 3.9056 4.5757 1.2694 42 1 1.7260 3.8657 2.2611 43 1 1.6350 4.0140 0.4896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070346056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:48 Heat of formation + Delta-G solvation = -57.036238 kcal Electronic energy + Delta-G solvation = -22750.442668 eV Core-core repulsion = 19374.813430 eV Total energy + Delta-G solvation = -3375.629237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98732 -38.88539 -37.08706 -34.96012 -34.23070 -32.23883 -31.33954 -30.16468 -30.01084 -27.24369 -25.37523 -24.40993 -23.87934 -22.16462 -21.53260 -20.69386 -20.20821 -17.81514 -17.15035 -16.67634 -16.42011 -16.12782 -15.27955 -14.85011 -14.44030 -14.27591 -14.15608 -13.92401 -13.77811 -13.53119 -13.38583 -13.08039 -12.69283 -12.43562 -12.19812 -11.94171 -11.88117 -11.60210 -11.47292 -11.39916 -11.28784 -11.11786 -11.04613 -10.78147 -10.58276 -10.41719 -10.35761 -9.74285 -9.23652 -9.18025 -8.44971 -8.17976 -6.40938 -6.32341 -3.89693 2.19340 2.56419 3.18569 3.19771 3.22300 3.53205 3.72455 4.05953 4.42516 4.62013 4.64585 4.73222 4.85584 4.96445 4.99663 5.08252 5.13578 5.20074 5.26142 5.39694 5.43220 5.51320 5.55719 5.65301 5.66833 5.69363 5.75515 5.79554 5.84530 5.97552 6.03652 6.12701 6.21579 6.26601 6.53645 6.85576 6.90618 7.04066 7.12882 7.31692 7.44563 7.63717 7.97039 8.11920 8.23380 9.13440 9.87801 10.86305 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044258 B = 0.002640 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.498972 B =10601.816939 C =10853.199585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.094 3.906 4 H 0.059 0.941 5 C -0.156 4.156 6 C 0.161 3.839 7 H 0.074 0.926 8 N -0.754 5.754 9 C 0.124 3.876 10 C -0.142 4.142 11 C -0.190 4.190 12 C 0.114 3.886 13 O -0.188 6.188 14 C -0.387 4.387 15 H 0.087 0.913 16 C 0.036 3.964 17 N -0.869 5.869 18 Si 0.938 3.062 19 H -0.279 1.279 20 H -0.272 1.272 21 H -0.272 1.272 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.173 4.173 25 C 0.064 3.936 26 O -0.379 6.379 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.390 0.610 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.268 0.732 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.375 -16.480 6.425 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.036 3.964 4 H 0.077 0.923 5 C -0.194 4.194 6 C 0.054 3.946 7 H 0.092 0.908 8 N -0.388 5.388 9 C 0.026 3.974 10 C -0.164 4.164 11 C -0.210 4.210 12 C 0.061 3.939 13 O -0.093 6.093 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.167 4.167 17 N -0.506 5.506 18 Si 0.763 3.237 19 H -0.204 1.204 20 H -0.197 1.197 21 H -0.197 1.197 22 C -0.170 4.170 23 C -0.169 4.169 24 C -0.212 4.212 25 C -0.014 4.014 26 O -0.298 6.298 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.223 0.777 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.643 -16.047 6.353 22.634 hybrid contribution 1.452 -0.206 -0.124 1.472 sum -13.191 -16.253 6.229 21.839 Atomic orbital electron populations 1.21719 0.95227 1.01461 1.02330 1.21544 0.96719 0.94322 1.02726 1.22093 0.92850 0.94151 0.87343 0.92270 1.22498 0.96446 0.97227 1.03261 1.20671 0.81984 0.95174 0.96781 0.90760 1.44253 1.03464 1.16019 1.75062 1.17394 0.90892 0.88071 1.01011 1.20233 0.91790 0.98628 1.05730 1.20992 1.00368 0.93911 1.05711 1.19237 0.91656 0.87708 0.95298 1.83983 1.21192 1.30150 1.73975 1.21181 0.79297 1.04040 1.41879 0.89524 1.25217 1.00156 0.94908 0.96412 1.70041 1.36121 1.05442 1.38959 0.85836 0.81105 0.77960 0.78807 1.20416 1.19688 1.19682 1.20022 0.91649 0.98816 1.06558 1.20183 0.98003 0.92987 1.05695 1.22765 0.96031 1.02914 0.99505 1.22563 0.93893 0.82777 1.02137 1.87907 1.78573 1.24891 1.38450 0.91901 0.92911 0.92842 0.90643 0.91134 0.90439 0.90780 0.77657 0.87665 0.85519 0.92247 0.86553 0.87212 0.91036 0.90227 0.88814 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.81 37.16 0.36 -0.70 16 2 C -0.12 -0.86 5.64 -26.73 -0.15 -1.01 16 3 C 0.09 0.83 2.64 -26.68 -0.07 0.76 16 4 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 5 C -0.16 -1.44 4.89 -26.59 -0.13 -1.57 16 6 C 0.16 1.80 2.23 -67.74 -0.15 1.65 16 7 H 0.07 0.90 6.50 -51.93 -0.34 0.56 16 8 N -0.75 -9.97 5.26 -51.93 -0.27 -10.25 16 9 C 0.12 2.12 6.64 -83.70 -0.56 1.56 16 10 C -0.14 -2.62 9.89 -39.40 -0.39 -3.01 16 11 C -0.19 -4.18 9.16 -39.42 -0.36 -4.54 16 12 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 13 O -0.19 -5.48 9.76 -0.03 0.00 -5.48 16 14 C -0.39 -11.05 9.48 30.87 0.29 -10.75 16 15 H 0.09 2.28 5.20 -52.48 -0.27 2.01 16 16 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16 17 N -0.87 -26.07 13.67 55.48 0.76 -25.31 16 18 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 22 C -0.15 -3.22 9.98 -39.42 -0.39 -3.61 16 23 C -0.15 -2.64 8.87 -39.40 -0.35 -2.98 16 24 C -0.17 -1.87 5.66 -26.59 -0.15 -2.02 16 25 C 0.06 0.60 6.84 37.20 0.25 0.86 16 26 O -0.38 -3.93 9.94 -35.23 -0.35 -4.28 16 27 H 0.06 0.50 7.82 -51.93 -0.41 0.10 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.39 4.59 8.61 -40.82 -0.35 4.24 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 39 H 0.11 1.69 6.06 -52.49 -0.32 1.37 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -31.33 346.75 -8.40 -39.73 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.59 Total: 6.32 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -2.15 Total: -21.92 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.49 Total: -35.56 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.35 Total: -9.76 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.33 -8.40 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070346056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.309 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds