Wall clock time and date at job start Tue Mar 31 2020 07:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47145 * 2 1 4 4 H 1.08998 * 109.47847 * 304.97378 * 3 2 1 5 5 C 1.53093 * 109.48026 * 184.94204 * 3 2 1 6 6 C 1.53184 * 109.16058 * 182.40690 * 5 3 2 7 7 H 1.08999 * 109.61449 * 297.06880 * 6 5 3 8 8 N 1.46498 * 109.53978 * 176.84830 * 6 5 3 9 9 C 1.39786 * 119.99794 * 155.44601 * 8 6 5 10 10 C 1.38951 * 120.00275 * 179.97438 * 9 8 6 11 11 C 1.38012 * 119.98724 * 180.02562 * 10 9 8 12 12 C 1.38896 * 120.01019 * 359.97438 * 11 10 9 13 13 O 1.35793 * 119.99421 * 180.02562 * 12 11 10 14 14 C 1.34811 * 117.00336 * 5.54334 * 13 12 11 15 15 H 1.08003 * 119.99959 * 354.94452 * 14 13 12 16 16 C 1.38619 * 120.00614 * 174.94144 * 14 13 12 17 17 N 1.31588 * 119.99712 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00323 * 180.27618 * 16 14 13 19 19 H 1.48503 * 109.47124 * 179.72244 * 18 16 14 20 20 H 1.48497 * 109.46961 * 299.72206 * 18 16 14 21 21 H 1.48500 * 109.46801 * 59.72322 * 18 16 14 22 22 C 1.38896 * 120.01020 * 0.27976 * 12 11 10 23 23 C 1.38004 * 120.00681 * 359.48585 * 22 12 11 24 24 C 1.53182 * 109.03410 * 56.98058 * 6 5 3 25 25 C 1.53090 * 109.16484 * 303.01659 * 24 6 5 26 26 O 1.42902 * 109.41234 * 57.61021 * 25 24 6 27 27 H 1.08994 * 109.47344 * 300.00329 * 1 2 3 28 28 H 1.09005 * 109.46790 * 59.99867 * 1 2 3 29 29 H 1.09000 * 109.46776 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47568 * 240.00339 * 2 1 3 31 31 H 1.08999 * 109.47401 * 119.99820 * 2 1 3 32 32 H 1.08998 * 109.52060 * 62.50642 * 5 3 2 33 33 H 1.08993 * 109.52574 * 302.31154 * 5 3 2 34 34 H 0.97000 * 120.00200 * 335.44195 * 8 6 5 35 35 H 1.07994 * 120.00771 * 359.97438 * 10 9 8 36 36 H 1.08001 * 119.99514 * 180.02562 * 11 10 9 37 37 H 0.96998 * 119.99929 * 180.02562 * 17 16 14 38 38 H 1.08003 * 119.99819 * 179.74724 * 22 12 11 39 39 H 1.07999 * 120.00716 * 180.23057 * 23 22 12 40 40 H 1.09005 * 109.51953 * 62.92729 * 24 6 5 41 41 H 1.08998 * 109.51738 * 183.11047 * 24 6 5 42 42 H 1.08994 * 109.48161 * 177.59073 * 25 24 6 43 43 H 1.08995 * 109.48201 * 297.61821 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 -0.8420 5 6 3.5659 1.4446 -0.1243 6 6 4.0734 2.8886 -0.0631 7 1 3.6813 3.4505 -0.9108 8 7 5.5377 2.8955 -0.1057 9 6 6.2181 4.0249 -0.5701 10 6 7.6070 4.0318 -0.6101 11 6 8.2784 5.1472 -1.0682 12 6 7.5659 6.2625 -1.4897 13 8 8.2268 7.3596 -1.9408 14 6 9.5658 7.2606 -2.0624 15 1 10.0737 6.3677 -1.7290 16 6 10.2907 8.3047 -2.6154 17 7 9.6718 9.3924 -3.0221 18 14 12.1452 8.1643 -2.7909 19 1 12.6787 9.4029 -3.4126 20 1 12.7567 7.9803 -1.4503 21 1 12.4742 6.9982 -3.6495 22 6 6.1777 6.2578 -1.4448 23 6 5.5056 5.1409 -0.9914 24 6 3.5956 3.5311 1.2428 25 6 2.0686 3.4485 1.3143 26 8 1.6621 2.0817 1.2210 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8544 0.9971 -1.0755 33 1 3.9989 0.8712 0.6953 34 1 6.0352 2.1165 0.1884 35 1 8.1611 3.1648 -0.2820 36 1 9.3579 5.1525 -1.0997 37 1 10.1790 10.1229 -3.4094 38 1 5.6240 7.1266 -1.7688 39 1 4.4261 5.1359 -0.9601 40 1 4.0293 2.9998 2.0901 41 1 3.9056 4.5757 1.2694 42 1 1.7260 3.8657 2.2611 43 1 1.6350 4.0140 0.4896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070346056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:47 Heat of formation + Delta-G solvation = -76.522027 kcal Electronic energy + Delta-G solvation = -22751.287635 eV Core-core repulsion = 19374.813430 eV Total energy + Delta-G solvation = -3376.474205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.01580 -40.37760 -38.64330 -36.24968 -34.87784 -34.18316 -32.64029 -31.69865 -30.76996 -28.72687 -27.19213 -25.46951 -24.71529 -23.61360 -22.63337 -21.83018 -21.26105 -19.63920 -18.87469 -17.83079 -17.35714 -17.16532 -16.54888 -16.16175 -15.69272 -15.60407 -15.41153 -15.36224 -14.83688 -14.58337 -14.51536 -14.31802 -14.08677 -13.94747 -13.44560 -13.40307 -12.99431 -12.74314 -12.72282 -12.61079 -12.41724 -12.18023 -12.10803 -12.04616 -11.77952 -11.71706 -11.19024 -11.10059 -10.88448 -10.51763 -10.17737 -9.78360 -8.39280 -7.94930 -6.03091 0.57671 0.92477 1.36443 1.47673 1.52617 2.22633 2.55190 2.86921 2.90824 3.24675 3.66089 3.67074 3.86289 3.93336 4.07688 4.13880 4.18300 4.23089 4.24420 4.40466 4.46102 4.54231 4.56464 4.65617 4.75700 4.78670 4.86044 4.92799 4.96802 5.08010 5.11843 5.13634 5.15027 5.22821 5.27826 5.33545 5.47745 5.48556 5.54610 5.78093 5.98059 6.11080 6.32200 6.60042 7.01978 7.06656 7.93131 8.84958 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044258 B = 0.002640 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.498972 B =10601.816939 C =10853.199585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.091 3.909 4 H 0.062 0.938 5 C -0.147 4.147 6 C 0.155 3.845 7 H 0.072 0.928 8 N -0.740 5.740 9 C 0.154 3.846 10 C -0.145 4.145 11 C -0.194 4.194 12 C 0.062 3.938 13 O -0.242 6.242 14 C -0.406 4.406 15 H 0.098 0.902 16 C -0.029 4.029 17 N -0.927 5.927 18 Si 1.017 2.983 19 H -0.273 1.273 20 H -0.258 1.258 21 H -0.259 1.259 22 C -0.156 4.156 23 C -0.145 4.145 24 C -0.168 4.168 25 C 0.064 3.936 26 O -0.391 6.391 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.402 0.598 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.270 0.730 38 H 0.112 0.888 39 H 0.140 0.860 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.027 -19.618 7.233 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.033 3.967 4 H 0.080 0.920 5 C -0.185 4.185 6 C 0.049 3.951 7 H 0.090 0.910 8 N -0.373 5.373 9 C 0.053 3.947 10 C -0.167 4.167 11 C -0.213 4.213 12 C 0.013 3.987 13 O -0.150 6.150 14 C -0.483 4.483 15 H 0.115 0.885 16 C -0.225 4.225 17 N -0.566 5.566 18 Si 0.836 3.164 19 H -0.198 1.198 20 H -0.183 1.183 21 H -0.183 1.183 22 C -0.175 4.175 23 C -0.167 4.167 24 C -0.207 4.207 25 C -0.013 4.013 26 O -0.310 6.310 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.238 0.762 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.079 0.921 38 H 0.131 0.869 39 H 0.158 0.842 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.122 0.878 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.352 -19.272 7.202 25.670 hybrid contribution 1.348 0.495 -0.240 1.455 sum -14.004 -18.777 6.962 24.437 Atomic orbital electron populations 1.21706 0.95098 1.02017 1.01834 1.21563 0.96825 0.93410 1.03341 1.22219 0.92559 0.94977 0.86961 0.91986 1.22430 0.96625 0.95511 1.03962 1.20873 0.80388 0.96910 0.96929 0.91041 1.44356 1.04577 1.14958 1.73390 1.17511 0.90697 0.88611 0.97865 1.20495 0.92601 0.98481 1.05152 1.21058 1.00160 0.94358 1.05754 1.19737 0.92929 0.88167 0.97898 1.83932 1.21583 1.32785 1.76727 1.21707 0.79851 1.04740 1.42001 0.88464 1.26536 1.05897 0.94245 0.95842 1.70201 1.38457 1.06705 1.41277 0.84677 0.73849 0.78408 0.79447 1.19803 1.18259 1.18293 1.20228 0.90747 1.00005 1.06552 1.20426 0.99456 0.92017 1.04776 1.22686 0.97135 1.01930 0.98945 1.22597 0.92796 0.82762 1.03112 1.87912 1.78685 1.25190 1.39227 0.93119 0.92668 0.91819 0.89179 0.91346 0.89495 0.90375 0.76202 0.84339 0.86344 0.92149 0.86948 0.84215 0.91344 0.91439 0.87789 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.81 71.98 0.71 -1.06 16 2 C -0.11 -1.36 5.64 30.60 0.17 -1.19 16 3 C 0.09 1.34 2.64 30.63 0.08 1.42 16 4 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 5 C -0.15 -2.17 4.89 30.69 0.15 -2.02 16 6 C 0.15 2.95 2.23 45.11 0.10 3.05 16 7 H 0.07 1.46 6.50 -2.39 -0.02 1.45 16 8 N -0.74 -16.78 5.26 -318.22 -1.67 -18.46 16 9 C 0.15 4.83 6.64 38.21 0.25 5.09 16 10 C -0.15 -5.05 9.89 22.39 0.22 -4.83 16 11 C -0.19 -8.59 9.16 22.37 0.20 -8.38 16 12 C 0.06 3.18 6.65 22.59 0.15 3.33 16 13 O -0.24 -14.99 9.76 -23.02 -0.22 -15.22 16 14 C -0.41 -24.29 9.48 67.91 0.64 -23.64 16 15 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 16 C -0.03 -1.70 5.49 84.82 0.47 -1.23 16 17 N -0.93 -58.41 13.67 21.61 0.30 -58.12 16 18 Si 1.02 43.98 29.55 68.60 2.03 46.01 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 22 C -0.16 -6.77 9.98 22.37 0.22 -6.55 16 23 C -0.14 -4.95 8.87 22.38 0.20 -4.75 16 24 C -0.17 -3.16 5.66 30.69 0.17 -2.99 16 25 C 0.06 1.05 6.84 72.01 0.49 1.55 16 26 O -0.39 -7.07 9.94 -148.98 -1.48 -8.55 16 27 H 0.05 0.72 7.82 -2.39 -0.02 0.70 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.40 7.68 8.61 -92.71 -0.80 6.88 16 35 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 36 H 0.12 5.34 5.63 -2.91 -0.02 5.32 16 37 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 38 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.14 3.92 6.06 -2.91 -0.02 3.90 16 40 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.07 1.45 7.68 -2.39 -0.02 1.44 16 42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -72.03 346.75 3.39 -68.64 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.21 Total: 27.90 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 4.24 Total: -42.21 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -1.38 Total: -76.57 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -1.71 Total: -23.76 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.03 3.39 -68.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070346056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.878 kcal (2) G-P(sol) polarization free energy of solvation -72.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds