Wall clock time and date at job start Tue Mar 31 2020 07:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47444 * 2 1 4 4 H 1.09003 * 109.47373 * 55.02598 * 3 2 1 5 5 C 1.53083 * 109.49052 * 175.05454 * 3 2 1 6 6 C 1.53180 * 109.16278 * 177.60031 * 5 3 2 7 7 H 1.09003 * 109.61863 * 183.11172 * 6 5 3 8 8 N 1.46495 * 109.54402 * 62.88664 * 6 5 3 9 9 C 1.39778 * 120.00268 * 155.44850 * 8 6 5 10 10 C 1.38945 * 120.01032 * 180.02562 * 9 8 6 11 11 C 1.38012 * 119.99547 * 179.97438 * 10 9 8 12 12 C 1.38897 * 120.00692 * 359.97130 * 11 10 9 13 13 O 1.35798 * 119.99262 * 180.02562 * 12 11 10 14 14 C 1.34813 * 117.00174 * 5.55425 * 13 12 11 15 15 H 1.07997 * 119.99933 * 355.23860 * 14 13 12 16 16 C 1.38618 * 119.99812 * 174.96646 * 14 13 12 17 17 N 1.31581 * 120.00307 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47319 * 89.99764 * 18 16 14 20 20 H 1.48503 * 109.47389 * 209.99900 * 18 16 14 21 21 H 1.48498 * 109.46869 * 329.99845 * 18 16 14 22 22 C 1.38898 * 120.01339 * 0.30351 * 12 11 10 23 23 C 1.38019 * 119.99954 * 359.44276 * 22 12 11 24 24 C 1.53180 * 109.03664 * 303.02044 * 6 5 3 25 25 C 1.53092 * 109.16246 * 56.97892 * 24 6 5 26 26 O 1.42902 * 109.41504 * 302.39204 * 25 24 6 27 27 H 1.09000 * 109.46378 * 299.99462 * 1 2 3 28 28 H 1.08992 * 109.47523 * 59.99533 * 1 2 3 29 29 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46561 * 240.00680 * 2 1 3 31 31 H 1.08991 * 109.47223 * 120.00921 * 2 1 3 32 32 H 1.08999 * 109.52482 * 57.69667 * 5 3 2 33 33 H 1.08993 * 109.52476 * 297.50238 * 5 3 2 34 34 H 0.97004 * 120.00052 * 335.44511 * 8 6 5 35 35 H 1.08001 * 120.00282 * 359.97438 * 10 9 8 36 36 H 1.08007 * 119.99743 * 180.02562 * 11 10 9 37 37 H 0.97001 * 119.99792 * 180.02562 * 17 16 14 38 38 H 1.07999 * 119.99970 * 179.72605 * 22 12 11 39 39 H 1.07998 * 119.99766 * 180.27491 * 23 22 12 40 40 H 1.09001 * 109.52327 * 176.88673 * 24 6 5 41 41 H 1.08997 * 109.52377 * 297.07555 * 24 6 5 42 42 H 1.09000 * 109.48111 * 62.37387 * 25 24 6 43 43 H 1.09008 * 109.48358 * 182.39979 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9815 0.8421 5 6 3.5659 1.4447 0.1244 6 6 4.0732 2.8887 0.0633 7 1 5.1628 2.8955 0.0957 8 7 3.5444 3.6426 1.2026 9 6 4.2224 4.7728 1.6683 10 6 3.7212 5.4876 2.7492 11 6 4.3911 6.6031 3.2091 12 6 5.5667 7.0109 2.5918 13 8 6.2259 8.1083 3.0448 14 6 5.7512 8.6884 4.1654 15 1 4.8399 8.3251 4.6169 16 6 6.4357 9.7474 4.7410 17 7 7.5491 10.1862 4.1941 18 14 5.7782 10.5507 6.2940 19 1 6.3421 9.8635 7.4837 20 1 6.1727 11.9822 6.3161 21 1 4.2972 10.4450 6.3171 22 6 6.0650 6.2999 1.5076 23 6 5.3981 5.1812 1.0507 24 6 3.5955 3.5313 -1.2425 25 6 2.0685 3.4485 -1.3141 26 8 1.6621 2.0816 -1.2209 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.9991 0.8715 -0.6953 33 1 3.8545 0.9972 1.0754 34 1 2.7236 3.3575 1.6339 35 1 2.8074 5.1703 3.2295 36 1 4.0018 7.1586 4.0496 37 1 8.0283 10.9270 4.5972 38 1 6.9766 6.6198 1.0251 39 1 5.7880 4.6259 0.2105 40 1 3.9053 4.5761 -1.2690 41 1 4.0292 3.0003 -2.0898 42 1 1.6347 4.0137 -0.4892 43 1 1.7257 3.8661 -2.2609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070346057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:51 Heat of formation + Delta-G solvation = -54.871594 kcal Electronic energy + Delta-G solvation = -23046.213964 eV Core-core repulsion = 19670.678592 eV Total energy + Delta-G solvation = -3375.535371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14252 -38.83875 -36.97993 -34.88680 -34.19062 -32.23676 -31.26986 -30.16096 -29.98797 -27.06251 -25.47433 -24.79431 -23.89322 -22.13739 -21.46888 -21.13037 -19.49929 -17.80425 -17.10081 -16.70406 -16.47190 -16.02628 -15.46549 -14.85299 -14.47343 -14.22518 -14.04375 -13.92488 -13.73604 -13.45028 -13.38246 -12.86363 -12.62875 -12.42630 -12.38740 -11.98320 -11.86414 -11.71713 -11.54244 -11.37622 -11.25538 -11.13192 -11.03778 -10.78944 -10.57184 -10.37434 -10.35393 -9.57516 -9.22840 -9.17128 -8.45575 -8.18122 -6.41639 -6.32873 -3.90115 2.19110 2.56050 3.18084 3.18987 3.23290 3.59566 3.77333 4.05631 4.40358 4.59821 4.65220 4.76235 4.88284 4.89947 5.03965 5.08759 5.19590 5.23959 5.30780 5.40747 5.46089 5.58113 5.63926 5.67571 5.69219 5.71436 5.78523 5.83399 5.87476 5.97323 6.00844 6.06969 6.21544 6.25440 6.53235 6.85220 6.90316 7.10204 7.12656 7.31618 7.44116 7.63164 7.95835 8.11528 8.20842 9.13143 9.87525 10.85923 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.002900 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.176361 B = 9654.250310 C =10058.521494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.156 4.156 6 C 0.158 3.842 7 H 0.079 0.921 8 N -0.754 5.754 9 C 0.124 3.876 10 C -0.142 4.142 11 C -0.190 4.190 12 C 0.114 3.886 13 O -0.188 6.188 14 C -0.387 4.387 15 H 0.088 0.912 16 C 0.036 3.964 17 N -0.869 5.869 18 Si 0.938 3.062 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.269 1.269 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.173 4.173 25 C 0.066 3.934 26 O -0.380 6.380 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.387 0.613 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.267 0.733 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.863 -17.743 -8.348 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.073 0.927 5 C -0.195 4.195 6 C 0.052 3.948 7 H 0.097 0.903 8 N -0.390 5.390 9 C 0.027 3.973 10 C -0.164 4.164 11 C -0.210 4.210 12 C 0.061 3.939 13 O -0.093 6.093 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.167 4.167 17 N -0.506 5.506 18 Si 0.763 3.237 19 H -0.201 1.201 20 H -0.204 1.204 21 H -0.194 1.194 22 C -0.170 4.170 23 C -0.168 4.168 24 C -0.212 4.212 25 C -0.010 4.010 26 O -0.299 6.299 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.222 0.778 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.468 -17.567 -8.662 22.208 hybrid contribution -0.469 0.515 1.201 1.388 sum -10.937 -17.053 -7.461 21.589 Atomic orbital electron populations 1.21719 0.95292 1.01408 1.02331 1.21553 0.96710 0.94457 1.02637 1.22071 0.93368 0.93877 0.87316 0.92651 1.22477 0.96679 0.96898 1.03419 1.20689 0.98627 0.89697 0.85835 0.90276 1.44347 1.28863 1.29989 1.35836 1.17374 0.93997 0.89784 0.96169 1.20224 1.00700 0.97471 0.98030 1.20987 0.97334 0.99159 1.03497 1.19240 0.91807 0.88736 0.94084 1.83987 1.50344 1.34657 1.40348 1.21230 1.08930 1.14551 1.01640 0.89472 1.25214 0.95676 0.96751 0.99052 1.70049 1.15306 1.25860 1.39337 0.85767 0.78933 0.78478 0.80542 1.20065 1.20400 1.19365 1.20033 1.01608 0.96672 0.98736 1.20197 0.95946 0.98636 1.01983 1.22679 0.97180 1.02854 0.98491 1.22475 0.94063 0.82561 1.01939 1.87894 1.78672 1.25050 1.38309 0.92938 0.91932 0.92879 0.91155 0.90718 0.90073 0.90386 0.77836 0.87767 0.85543 0.92297 0.86564 0.87103 0.90152 0.90969 0.92873 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.81 37.16 0.36 -0.78 16 2 C -0.12 -0.90 5.64 -26.73 -0.15 -1.05 16 3 C 0.09 0.84 2.47 -26.69 -0.07 0.78 16 4 H 0.06 0.53 6.72 -51.93 -0.35 0.18 16 5 C -0.16 -1.42 5.07 -26.60 -0.13 -1.55 16 6 C 0.16 1.74 2.50 -67.75 -0.17 1.57 16 7 H 0.08 0.92 6.50 -51.93 -0.34 0.59 16 8 N -0.75 -9.72 4.58 -51.94 -0.24 -9.95 16 9 C 0.12 2.08 6.64 -83.71 -0.56 1.53 16 10 C -0.14 -2.59 9.89 -39.40 -0.39 -2.98 16 11 C -0.19 -4.15 9.16 -39.42 -0.36 -4.51 16 12 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 13 O -0.19 -5.47 9.76 -0.05 0.00 -5.47 16 14 C -0.39 -11.01 9.48 30.87 0.29 -10.72 16 15 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 16 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 17 N -0.87 -26.04 13.67 55.48 0.76 -25.28 16 18 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.15 -3.19 9.99 -39.42 -0.39 -3.59 16 23 C -0.15 -2.58 8.85 -39.40 -0.35 -2.93 16 24 C -0.17 -1.84 5.74 -26.59 -0.15 -1.99 16 25 C 0.07 0.70 6.68 37.21 0.25 0.95 16 26 O -0.38 -4.14 9.94 -35.23 -0.35 -4.49 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.39 4.55 7.08 -40.82 -0.29 4.26 16 35 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.13 2.78 5.63 -52.48 -0.30 2.49 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 39 H 0.11 1.68 6.19 -52.49 -0.32 1.36 16 40 H 0.08 0.96 7.79 -51.93 -0.40 0.56 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 43 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -31.04 343.13 -8.30 -39.34 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.44 Total: 6.61 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.17 Total: -21.85 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.52 Total: -35.24 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.35 Total: -9.96 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.04 -8.30 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070346057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.534 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds