Wall clock time and date at job start Tue Mar 31 2020 07:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47444 * 2 1 4 4 H 1.09003 * 109.47373 * 55.02598 * 3 2 1 5 5 C 1.53083 * 109.49052 * 175.05454 * 3 2 1 6 6 C 1.53180 * 109.16278 * 177.60031 * 5 3 2 7 7 H 1.09003 * 109.61863 * 183.11172 * 6 5 3 8 8 N 1.46495 * 109.54402 * 62.88664 * 6 5 3 9 9 C 1.39778 * 120.00268 * 155.44850 * 8 6 5 10 10 C 1.38945 * 120.01032 * 180.02562 * 9 8 6 11 11 C 1.38012 * 119.99547 * 179.97438 * 10 9 8 12 12 C 1.38897 * 120.00692 * 359.97130 * 11 10 9 13 13 O 1.35798 * 119.99262 * 180.02562 * 12 11 10 14 14 C 1.34813 * 117.00174 * 5.55425 * 13 12 11 15 15 H 1.07997 * 119.99933 * 355.23860 * 14 13 12 16 16 C 1.38618 * 119.99812 * 174.96646 * 14 13 12 17 17 N 1.31581 * 120.00307 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47319 * 89.99764 * 18 16 14 20 20 H 1.48503 * 109.47389 * 209.99900 * 18 16 14 21 21 H 1.48498 * 109.46869 * 329.99845 * 18 16 14 22 22 C 1.38898 * 120.01339 * 0.30351 * 12 11 10 23 23 C 1.38019 * 119.99954 * 359.44276 * 22 12 11 24 24 C 1.53180 * 109.03664 * 303.02044 * 6 5 3 25 25 C 1.53092 * 109.16246 * 56.97892 * 24 6 5 26 26 O 1.42902 * 109.41504 * 302.39204 * 25 24 6 27 27 H 1.09000 * 109.46378 * 299.99462 * 1 2 3 28 28 H 1.08992 * 109.47523 * 59.99533 * 1 2 3 29 29 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46561 * 240.00680 * 2 1 3 31 31 H 1.08991 * 109.47223 * 120.00921 * 2 1 3 32 32 H 1.08999 * 109.52482 * 57.69667 * 5 3 2 33 33 H 1.08993 * 109.52476 * 297.50238 * 5 3 2 34 34 H 0.97004 * 120.00052 * 335.44511 * 8 6 5 35 35 H 1.08001 * 120.00282 * 359.97438 * 10 9 8 36 36 H 1.08007 * 119.99743 * 180.02562 * 11 10 9 37 37 H 0.97001 * 119.99792 * 180.02562 * 17 16 14 38 38 H 1.07999 * 119.99970 * 179.72605 * 22 12 11 39 39 H 1.07998 * 119.99766 * 180.27491 * 23 22 12 40 40 H 1.09001 * 109.52327 * 176.88673 * 24 6 5 41 41 H 1.08997 * 109.52377 * 297.07555 * 24 6 5 42 42 H 1.09000 * 109.48111 * 62.37387 * 25 24 6 43 43 H 1.09008 * 109.48358 * 182.39979 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9815 0.8421 5 6 3.5659 1.4447 0.1244 6 6 4.0732 2.8887 0.0633 7 1 5.1628 2.8955 0.0957 8 7 3.5444 3.6426 1.2026 9 6 4.2224 4.7728 1.6683 10 6 3.7212 5.4876 2.7492 11 6 4.3911 6.6031 3.2091 12 6 5.5667 7.0109 2.5918 13 8 6.2259 8.1083 3.0448 14 6 5.7512 8.6884 4.1654 15 1 4.8399 8.3251 4.6169 16 6 6.4357 9.7474 4.7410 17 7 7.5491 10.1862 4.1941 18 14 5.7782 10.5507 6.2940 19 1 6.3421 9.8635 7.4837 20 1 6.1727 11.9822 6.3161 21 1 4.2972 10.4450 6.3171 22 6 6.0650 6.2999 1.5076 23 6 5.3981 5.1812 1.0507 24 6 3.5955 3.5313 -1.2425 25 6 2.0685 3.4485 -1.3141 26 8 1.6621 2.0816 -1.2209 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.9991 0.8715 -0.6953 33 1 3.8545 0.9972 1.0754 34 1 2.7236 3.3575 1.6339 35 1 2.8074 5.1703 3.2295 36 1 4.0018 7.1586 4.0496 37 1 8.0283 10.9270 4.5972 38 1 6.9766 6.6198 1.0251 39 1 5.7880 4.6259 0.2105 40 1 3.9053 4.5761 -1.2690 41 1 4.0292 3.0003 -2.0898 42 1 1.6347 4.0137 -0.4892 43 1 1.7257 3.8661 -2.2609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070346057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:50 Heat of formation + Delta-G solvation = -73.850880 kcal Electronic energy + Delta-G solvation = -23047.036968 eV Core-core repulsion = 19670.678592 eV Total energy + Delta-G solvation = -3376.358375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15655 -40.38917 -38.53255 -36.13051 -34.87303 -34.18200 -32.58720 -31.68363 -30.76347 -28.58295 -27.13551 -25.96607 -24.70283 -23.57603 -22.65461 -22.23370 -20.64161 -19.56515 -18.80410 -17.93730 -17.35724 -16.95922 -16.74887 -16.20209 -15.77386 -15.64181 -15.38467 -15.30034 -14.87140 -14.56316 -14.46106 -14.12432 -14.03339 -13.77164 -13.52842 -13.35815 -13.13720 -12.78915 -12.73971 -12.63742 -12.48068 -12.20376 -12.08692 -12.08051 -11.80900 -11.70719 -11.15403 -11.08823 -10.92496 -10.39276 -10.12293 -9.77174 -8.39430 -7.94419 -6.03074 0.58585 0.93385 1.36492 1.46330 1.53735 2.22468 2.60040 2.87010 2.91313 3.25333 3.65752 3.70160 3.82236 3.94174 4.06132 4.12959 4.18548 4.19624 4.28885 4.45113 4.51079 4.55618 4.61059 4.64885 4.74803 4.84874 4.89955 4.96396 4.97469 5.07784 5.13307 5.13967 5.15103 5.18164 5.28551 5.30583 5.46704 5.49464 5.55404 5.78778 5.98447 6.11475 6.33470 6.60869 6.98592 7.06583 7.93536 8.85121 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.002900 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.176361 B = 9654.250310 C =10058.521494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.054 0.946 5 C -0.148 4.148 6 C 0.151 3.849 7 H 0.079 0.921 8 N -0.739 5.739 9 C 0.156 3.844 10 C -0.146 4.146 11 C -0.193 4.193 12 C 0.063 3.937 13 O -0.243 6.243 14 C -0.405 4.405 15 H 0.098 0.902 16 C -0.029 4.029 17 N -0.927 5.927 18 Si 1.016 2.984 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.253 1.253 22 C -0.156 4.156 23 C -0.143 4.143 24 C -0.169 4.169 25 C 0.067 3.933 26 O -0.390 6.390 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.398 0.602 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.270 0.730 38 H 0.112 0.888 39 H 0.142 0.858 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.852 -20.484 -8.466 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.030 3.970 4 H 0.072 0.928 5 C -0.186 4.186 6 C 0.046 3.954 7 H 0.097 0.903 8 N -0.374 5.374 9 C 0.056 3.944 10 C -0.168 4.168 11 C -0.213 4.213 12 C 0.013 3.987 13 O -0.151 6.151 14 C -0.482 4.482 15 H 0.115 0.885 16 C -0.225 4.225 17 N -0.567 5.567 18 Si 0.836 3.164 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.177 1.177 22 C -0.175 4.175 23 C -0.165 4.165 24 C -0.208 4.208 25 C -0.010 4.010 26 O -0.309 6.309 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.234 0.766 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.160 0.840 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.512 -20.396 -8.821 25.503 hybrid contribution 0.005 1.017 1.003 1.429 sum -12.508 -19.379 -7.818 24.354 Atomic orbital electron populations 1.21710 0.95378 1.01964 1.01663 1.21572 0.96623 0.93525 1.03429 1.22211 0.93500 0.94628 0.86680 0.92823 1.22431 0.96459 0.95299 1.04455 1.20910 0.98687 0.90783 0.85038 0.90283 1.44438 1.28638 1.28401 1.35919 1.17471 0.92920 0.89661 0.94370 1.20475 1.01517 0.96343 0.98496 1.21039 0.96826 1.00218 1.03208 1.19736 0.93487 0.89314 0.96162 1.83934 1.52468 1.37222 1.41472 1.21744 1.09490 1.14966 1.01994 0.88474 1.26523 0.95907 0.97217 1.02845 1.70205 1.17441 1.27220 1.41824 0.84617 0.78944 0.77264 0.75570 1.18981 1.19768 1.17714 1.20241 1.01858 0.97465 0.97982 1.20440 0.95942 0.97499 1.02603 1.22632 0.97366 1.02129 0.98683 1.22471 0.93837 0.82579 1.02117 1.87904 1.78866 1.25020 1.39144 0.92907 0.93276 0.91777 0.91080 0.89185 0.88921 0.89456 0.76593 0.84566 0.86469 0.92160 0.87007 0.84023 0.91474 0.89598 0.93802 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.81 71.98 0.71 -1.20 16 2 C -0.11 -1.39 5.64 30.60 0.17 -1.22 16 3 C 0.09 1.32 2.47 30.62 0.08 1.39 16 4 H 0.05 0.83 6.72 -2.39 -0.02 0.81 16 5 C -0.15 -2.10 5.07 30.68 0.16 -1.94 16 6 C 0.15 2.77 2.50 45.11 0.11 2.89 16 7 H 0.08 1.52 6.50 -2.39 -0.02 1.51 16 8 N -0.74 -16.34 4.58 -318.24 -1.46 -17.80 16 9 C 0.16 4.82 6.64 38.21 0.25 5.07 16 10 C -0.15 -5.04 9.89 22.39 0.22 -4.82 16 11 C -0.19 -8.53 9.16 22.37 0.20 -8.32 16 12 C 0.06 3.18 6.65 22.59 0.15 3.33 16 13 O -0.24 -15.00 9.76 -23.09 -0.23 -15.23 16 14 C -0.41 -24.20 9.48 67.91 0.64 -23.56 16 15 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 16 C -0.03 -1.68 5.49 84.82 0.47 -1.22 16 17 N -0.93 -58.43 13.67 21.61 0.30 -58.14 16 18 Si 1.02 44.00 29.55 68.60 2.03 46.03 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 22 C -0.16 -6.73 9.99 22.38 0.22 -6.50 16 23 C -0.14 -4.81 8.85 22.39 0.20 -4.61 16 24 C -0.17 -3.07 5.74 30.69 0.18 -2.90 16 25 C 0.07 1.22 6.68 72.01 0.48 1.70 16 26 O -0.39 -7.37 9.94 -148.98 -1.48 -8.86 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.75 7.82 -2.39 -0.02 0.73 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.40 7.71 7.08 -92.71 -0.66 7.05 16 35 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.12 5.28 5.63 -2.91 -0.02 5.27 16 37 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 39 H 0.14 3.88 6.19 -2.91 -0.02 3.86 16 40 H 0.07 1.43 7.79 -2.39 -0.02 1.41 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.04 0.88 7.75 -2.39 -0.02 0.86 16 43 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -71.62 343.13 3.76 -67.87 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.35 Total: 28.03 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 4.24 Total: -41.90 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -1.16 Total: -75.93 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -1.71 Total: -24.09 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.62 3.76 -67.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070346057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.984 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds