Wall clock time and date at job start Tue Mar 31 2020 07:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46860 * 2 1 4 4 H 1.08997 * 109.48072 * 305.02082 * 3 2 1 5 5 C 1.53091 * 109.47492 * 184.99775 * 3 2 1 6 6 C 1.53184 * 109.16092 * 182.39799 * 5 3 2 7 7 H 1.08997 * 109.54562 * 176.94190 * 6 5 3 8 8 N 1.46505 * 109.54186 * 297.11453 * 6 5 3 9 9 C 1.39782 * 119.99808 * 204.82349 * 8 6 5 10 10 C 1.38950 * 120.00223 * 180.02562 * 9 8 6 11 11 C 1.38012 * 119.99258 * 179.97438 * 10 9 8 12 12 C 1.38902 * 120.00333 * 0.02562 * 11 10 9 13 13 O 1.35805 * 119.99209 * 180.02562 * 12 11 10 14 14 C 1.34808 * 116.99718 * 5.54225 * 13 12 11 15 15 H 1.07996 * 120.00371 * 354.93917 * 14 13 12 16 16 C 1.38629 * 119.99795 * 174.94243 * 14 13 12 17 17 N 1.31584 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47407 * 270.00384 * 18 16 14 20 20 H 1.48501 * 109.46822 * 30.00172 * 18 16 14 21 21 H 1.48498 * 109.46868 * 150.00054 * 18 16 14 22 22 C 1.38898 * 120.01554 * 0.26954 * 12 11 10 23 23 C 1.38015 * 120.00172 * 359.45756 * 22 12 11 24 24 C 1.53176 * 109.10697 * 57.02440 * 6 5 3 25 25 C 1.53274 * 109.06618 * 303.05819 * 24 6 5 26 26 O 1.42904 * 109.48858 * 65.05322 * 3 2 1 27 27 H 1.09003 * 109.47167 * 60.00222 * 1 2 3 28 28 H 1.08997 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46893 * 300.00273 * 1 2 3 30 30 H 1.09000 * 109.47165 * 240.00204 * 2 1 3 31 31 H 1.08994 * 109.46935 * 119.99872 * 2 1 3 32 32 H 1.08999 * 109.52192 * 62.49717 * 5 3 2 33 33 H 1.08995 * 109.58058 * 302.33621 * 5 3 2 34 34 H 0.96996 * 119.99920 * 24.81915 * 8 6 5 35 35 H 1.08000 * 120.00648 * 0.02562 * 10 9 8 36 36 H 1.07997 * 119.99955 * 180.02562 * 11 10 9 37 37 H 0.96998 * 119.99837 * 180.02562 * 17 16 14 38 38 H 1.07995 * 119.99744 * 179.70488 * 22 12 11 39 39 H 1.07994 * 120.00212 * 180.29378 * 23 22 12 40 40 H 1.08994 * 109.51914 * 62.88555 * 24 6 5 41 41 H 1.09003 * 109.52020 * 183.07153 * 24 6 5 42 42 H 1.08997 * 109.46132 * 297.56173 * 25 24 6 43 43 H 1.09005 * 109.46947 * 177.55720 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9819 -0.8415 5 6 3.5657 1.4446 -0.1257 6 6 4.0733 2.8886 -0.0647 7 1 5.1627 2.8939 -0.0991 8 7 3.5435 3.6428 -1.2035 9 6 4.2243 4.7697 -1.6730 10 6 3.7216 5.4855 -2.7527 11 6 4.3937 6.5984 -3.2158 12 6 5.5728 7.0026 -2.6029 13 8 6.2337 8.0981 -3.0585 14 6 5.6347 8.8135 -4.0315 15 1 4.7125 8.4622 -4.4702 16 6 6.2026 10.0000 -4.4689 17 7 7.3265 10.4277 -3.9347 18 14 5.3731 10.9910 -5.8177 19 1 5.8816 10.5489 -7.1410 20 1 3.9046 10.7790 -5.7558 21 1 5.6735 12.4330 -5.6285 22 6 6.0788 6.2838 -1.5275 23 6 5.4041 5.1741 -1.0605 24 6 3.5986 3.5322 1.2417 25 6 2.0699 3.4482 1.3146 26 8 1.6632 2.0815 1.2215 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8534 0.9973 -1.0772 33 1 4.0004 0.8708 0.6927 34 1 2.7203 3.3602 -1.6316 35 1 2.8045 5.1714 -3.2289 36 1 4.0028 7.1550 -4.0547 37 1 7.7237 11.2581 -4.2406 38 1 6.9981 6.5956 -1.0543 39 1 5.7950 4.6179 -0.2213 40 1 4.0331 3.0008 2.0883 41 1 3.9098 4.5765 1.2673 42 1 1.6355 4.0137 0.4903 43 1 1.7279 3.8655 2.2618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070346058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:53 Heat of formation + Delta-G solvation = -54.852712 kcal Electronic energy + Delta-G solvation = -23048.946006 eV Core-core repulsion = 19673.411454 eV Total energy + Delta-G solvation = -3375.534553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.13597 -38.83752 -36.97908 -34.88595 -34.18726 -32.23537 -31.26711 -30.15946 -29.98278 -27.06085 -25.47186 -24.79334 -23.89533 -22.13907 -21.46871 -21.13033 -19.49777 -17.80370 -17.10060 -16.70208 -16.47218 -16.02243 -15.46540 -14.85105 -14.47459 -14.22309 -14.04306 -13.91753 -13.73413 -13.44733 -13.40331 -12.84621 -12.62480 -12.44459 -12.37143 -11.98526 -11.86165 -11.72015 -11.54494 -11.37551 -11.25450 -11.13327 -11.03705 -10.78828 -10.57191 -10.37043 -10.35832 -9.56625 -9.25167 -9.15236 -8.45526 -8.18108 -6.41719 -6.32787 -3.90092 2.19138 2.56107 3.18064 3.18902 3.23450 3.59667 3.77347 4.05647 4.40479 4.59818 4.65217 4.76112 4.88392 4.89833 5.03917 5.08725 5.19260 5.24336 5.30813 5.40900 5.46144 5.58114 5.63977 5.67585 5.69292 5.71337 5.78586 5.83446 5.87515 5.97412 6.01002 6.06966 6.21585 6.25478 6.53249 6.85257 6.90338 7.10274 7.12683 7.31658 7.44134 7.63186 7.95846 8.11550 8.20877 9.13137 9.87548 10.85930 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033846 B = 0.002906 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.072590 B = 9631.442866 C =10002.970383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.156 4.156 6 C 0.158 3.842 7 H 0.079 0.921 8 N -0.754 5.754 9 C 0.124 3.876 10 C -0.142 4.142 11 C -0.190 4.190 12 C 0.114 3.886 13 O -0.188 6.188 14 C -0.387 4.387 15 H 0.088 0.912 16 C 0.036 3.964 17 N -0.869 5.869 18 Si 0.938 3.062 19 H -0.275 1.275 20 H -0.269 1.269 21 H -0.279 1.279 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.172 4.172 25 C 0.066 3.934 26 O -0.380 6.380 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.387 0.613 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.267 0.733 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 -18.048 8.024 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.195 4.195 6 C 0.051 3.949 7 H 0.097 0.903 8 N -0.390 5.390 9 C 0.027 3.973 10 C -0.164 4.164 11 C -0.210 4.210 12 C 0.061 3.939 13 O -0.093 6.093 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.167 4.167 17 N -0.506 5.506 18 Si 0.763 3.237 19 H -0.201 1.201 20 H -0.194 1.194 21 H -0.204 1.204 22 C -0.170 4.170 23 C -0.168 4.168 24 C -0.212 4.212 25 C -0.011 4.011 26 O -0.299 6.299 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.222 0.778 35 H 0.122 0.878 36 H 0.145 0.855 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.178 -17.879 8.331 22.196 hybrid contribution -0.568 0.624 -1.086 1.375 sum -10.746 -17.256 7.246 21.581 Atomic orbital electron populations 1.21720 0.95294 1.01407 1.02332 1.21554 0.96709 0.94456 1.02635 1.22074 0.93376 0.93881 0.87308 0.92647 1.22479 0.96679 0.96897 1.03417 1.20691 0.98631 0.89690 0.85854 0.90283 1.44349 1.28535 1.30228 1.35923 1.17376 0.93905 0.89860 0.96180 1.20225 1.00638 0.97470 0.98098 1.20986 0.97665 0.99025 1.03287 1.19244 0.91568 0.89685 0.93378 1.83988 1.42481 1.32739 1.50125 1.21230 1.08281 1.03356 1.13490 0.89473 1.25218 0.96345 0.96328 0.98802 1.70049 1.17599 1.21771 1.41132 0.85767 0.79131 0.78822 0.80002 1.20064 1.19367 1.20397 1.20032 1.01778 0.97262 0.97971 1.20196 0.95807 0.98798 1.01966 1.22708 0.97162 1.02852 0.98466 1.22506 0.94056 0.82549 1.01943 1.87896 1.78688 1.25071 1.38258 0.92943 0.92880 0.91926 0.90720 0.91152 0.90394 0.90078 0.77837 0.87767 0.85546 0.92298 0.86564 0.87101 0.90975 0.90126 0.92873 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.81 37.16 0.36 -0.78 16 2 C -0.12 -0.90 5.64 -26.73 -0.15 -1.05 16 3 C 0.09 0.84 2.47 -26.68 -0.07 0.78 16 4 H 0.06 0.53 6.71 -51.93 -0.35 0.18 16 5 C -0.16 -1.42 5.08 -26.59 -0.13 -1.55 16 6 C 0.16 1.74 2.50 -67.74 -0.17 1.57 16 7 H 0.08 0.92 6.48 -51.93 -0.34 0.59 16 8 N -0.75 -9.72 4.57 -51.93 -0.24 -9.96 16 9 C 0.12 2.08 6.64 -83.71 -0.56 1.53 16 10 C -0.14 -2.60 9.89 -39.40 -0.39 -2.99 16 11 C -0.19 -4.15 9.16 -39.42 -0.36 -4.51 16 12 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 13 O -0.19 -5.47 9.76 -0.06 0.00 -5.47 16 14 C -0.39 -11.01 9.48 30.88 0.29 -10.72 16 15 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 16 C 0.04 1.01 5.49 -17.51 -0.10 0.91 16 17 N -0.87 -26.04 13.67 55.48 0.76 -25.28 16 18 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 22 C -0.15 -3.19 9.98 -39.42 -0.39 -3.59 16 23 C -0.15 -2.58 8.88 -39.40 -0.35 -2.93 16 24 C -0.17 -1.84 5.78 -26.50 -0.15 -2.00 16 25 C 0.07 0.70 6.68 37.30 0.25 0.95 16 26 O -0.38 -4.15 9.95 -35.23 -0.35 -4.50 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.39 4.55 7.08 -40.82 -0.29 4.26 16 35 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.13 2.78 5.63 -52.49 -0.30 2.49 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 39 H 0.11 1.68 6.21 -52.49 -0.33 1.36 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.97 7.84 -51.93 -0.41 0.56 16 42 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -31.04 343.24 -8.30 -39.34 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.45 Total: 6.62 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.17 Total: -21.85 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.52 Total: -35.24 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.35 Total: -9.97 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.04 -8.30 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070346058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.513 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds